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Gene: Rimoc1 (RAB7A interacting MON1-CCZ1 complex subunit 1) Rattus norvegicus

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Symbol:

Rimoc1

Name:

RAB7A interacting MON1-CCZ1 complex subunit 1

RGD ID:

1305938

Description:

Predicted to be involved in mitophagy. Predicted to be located in cytosol and nucleoplasm. Orthologous to human RIMOC1 (RAB7A interacting MON1-CCZ1 complex subunit 1); INTERACTS WITH 17alpha-ethynylestradiol; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC310362; LOC310362; RAB7A-interacting MON1-CCZ1 complex subunit 1; RGD1305938; similar to expressed sequence AW549877; uncharacterized protein LOC310362; UPF0600 protein C5orf51 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	54,917,383 - 54,931,577 (-)	NCBI		GRCr8
mRatBN7.2	2	53,189,787 - 53,203,981 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	53,189,790 - 53,203,821 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	60,288,058 - 60,302,103 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	58,346,800 - 58,360,845 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	53,378,557 - 53,392,608 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	53,813,129 - 53,827,329 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	53,813,131 - 53,827,175 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	72,846,056 - 72,860,800 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	53,886,719 - 53,901,011 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	53,818,688 - 53,845,587 (-)	NCBI
Celera	2	48,867,910 - 48,881,955 (-)	NCBI		Celera
Cytogenetic Map	2	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rimoc1	Rat	Neurodevelopmental Disorders		ISO	RIMOC1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rimoc1	Rat	17alpha-ethynylestradiol	increases expression	EXP		6480464	Ethinyl Estradiol results in increased expression of RIMOC1 mRNA	CTD	PMID:29097150
Rimoc1	Rat	2-hydroxypropanoic acid	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of RIMOC1 mRNA	CTD	PMID:30851411
Rimoc1	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of RIMOC1 mRNA	CTD	PMID:24780913
Rimoc1	Rat	acetamide	decreases expression	EXP		6480464	acetamide results in decreased expression of RIMOC1 mRNA	CTD	PMID:31881176
Rimoc1	Rat	aflatoxin B1	decreases methylation	ISO	RIMOC1 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of RIMOC1 gene	CTD	PMID:27153756
Rimoc1	Rat	benzo[a]pyrene	increases methylation	ISO	RIMOC1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of RIMOC1 promoter	CTD	PMID:27901495
Rimoc1	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of RIMOC1 mRNA	CTD	PMID:25181051
Rimoc1	Rat	bisphenol A	decreases expression	ISO	Rimoc1 (Mus musculus)	6480464	bisphenol A results in decreased expression of RIMOC1 mRNA	CTD	PMID:32156529
Rimoc1	Rat	bisphenol A	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	bisphenol A results in decreased expression of C5ORF51 protein	CTD	PMID:33376534
Rimoc1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RIMOC1 mRNA	CTD	PMID:33296240
Rimoc1	Rat	cisplatin	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	Cisplatin results in decreased expression of RIMOC1 mRNA	CTD	PMID:27392435
Rimoc1	Rat	Dibutyl phosphate	affects expression	ISO	RIMOC1 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of C5ORF51 mRNA	CTD	PMID:37042841
Rimoc1	Rat	diuron	decreases expression	EXP		6480464	Diuron results in decreased expression of RIMOC1 mRNA	CTD	PMID:21551480
Rimoc1	Rat	doxorubicin	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of RIMOC1 mRNA	CTD	PMID:29803840
Rimoc1	Rat	enzyme inhibitor	multiple interactions	ISO	RIMOC1 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of RIMOC1 protein	CTD	PMID:23301498
Rimoc1	Rat	ivermectin	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	Ivermectin results in decreased expression of RIMOC1 protein	CTD	PMID:32959892
Rimoc1	Rat	nickel atom	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	Nickel results in decreased expression of RIMOC1 mRNA	CTD	PMID:23195993
Rimoc1	Rat	ozone	multiple interactions	ISO	Rimoc1 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of RIMOC1 mRNA	CTD	PMID:34911549
Rimoc1	Rat	perfluorooctane-1-sulfonic acid	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in decreased expression of RIMOC1 mRNA	CTD	PMID:27153767
Rimoc1	Rat	poly(I:C)	multiple interactions	EXP		6480464	[Poly I-C co-treated with HU 211] results in decreased expression of RIMOC1 mRNA	CTD	PMID:26923065
Rimoc1	Rat	rac-lactic acid	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of RIMOC1 mRNA	CTD	PMID:30851411
Rimoc1	Rat	sodium arsenite	increases expression	ISO	RIMOC1 (Homo sapiens)	6480464	sodium arsenite results in increased expression of C5ORF51 mRNA	CTD	PMID:38568856
Rimoc1	Rat	temozolomide	decreases expression	ISO	RIMOC1 (Homo sapiens)	6480464	Temozolomide results in decreased expression of RIMOC1 mRNA	CTD	PMID:31758290
Rimoc1	Rat	thiram	increases expression	ISO	RIMOC1 (Homo sapiens)	6480464	Thiram results in increased expression of C5ORF51 mRNA	CTD	PMID:38568856
Rimoc1	Rat	triphenyl phosphate	affects expression	ISO	RIMOC1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of C5ORF51 mRNA	CTD	PMID:37042841
Rimoc1	Rat	valproic acid	decreases methylation	ISO	RIMOC1 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of RIMOC1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rimoc1	Rat	mitophagy	involved_in	ISO	RIMOC1 (Homo sapiens)	1624291	PMID:34432599	RGD	PMID:34432599
Rimoc1	Rat	mitophagy	involved_in	IEA	UniProtKB:A6NDU8 and ensembl:ENSP00000371061	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rimoc1	Rat	mitophagy	involved_in	IEA	InterPro:IPR037657	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rimoc1	Rat	cytosol	located_in	IEA	UniProtKB:A6NDU8 and ensembl:ENSP00000371061	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rimoc1	Rat	cytosol	located_in	ISO	RIMOC1 (Homo sapiens)	1624291	PMID:34432599	RGD	GO_REF:0000052 and PMID:34432599
Rimoc1	Rat	nucleoplasm	located_in	IEA	UniProtKB:A6NDU8 and ensembl:ENSP00000371061	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rimoc1	Rat	nucleoplasm	located_in	ISO	RIMOC1 (Homo sapiens)	1624291		RGD	GO_REF:0000052

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rimoc1	Rat	protein binding	enables	ISO	RIMOC1 (Homo sapiens)	1624291	UniProtKB:P51149 more ...	RGD	PMID:32296183 and PMID:34432599

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Rimoc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	54,917,383 - 54,931,577 (-)	NCBI		GRCr8
mRatBN7.2	2	53,189,787 - 53,203,981 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	53,189,790 - 53,203,821 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	60,288,058 - 60,302,103 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	58,346,800 - 58,360,845 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	53,378,557 - 53,392,608 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	53,813,129 - 53,827,329 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	53,813,131 - 53,827,175 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	72,846,056 - 72,860,800 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	53,886,719 - 53,901,011 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	53,818,688 - 53,845,587 (-)	NCBI
Celera	2	48,867,910 - 48,881,955 (-)	NCBI		Celera
Cytogenetic Map	2	q16	NCBI

RIMOC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	41,904,344 - 41,921,636 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	41,904,188 - 41,921,636 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	41,904,446 - 41,921,738 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	41,940,227 - 41,957,495 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	41,792,762 - 41,810,031 (+)	NCBI		Celera
Cytogenetic Map	5	p13.1	NCBI
HuRef	5	41,857,169 - 41,874,433 (+)	NCBI		HuRef
CHM1_1	5	41,906,327 - 41,923,597 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	42,160,750 - 42,178,038 (+)	NCBI		T2T-CHM13v2.0

Rimoc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	4,011,517 - 4,025,228 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	4,011,517 - 4,025,226 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	3,982,035 - 3,995,746 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	3,982,035 - 3,995,744 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	3,932,035 - 3,945,752 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	3,932,035 - 3,945,752 (-)	NCBI		MGSCv36	mm8
Celera	15	3,843,677 - 3,857,377 (-)	NCBI		Celera
Cytogenetic Map	15	A1	NCBI
cM Map	15	1.84	NCBI

Rimoc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	26,026,290 - 26,040,311 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955426	26,026,284 - 26,040,311 (+)	NCBI	ChiLan1.0	ChiLan1.0

RIMOC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	68,429,142 - 68,446,566 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	66,582,871 - 66,600,202 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	68,477,984 - 68,495,352 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	73,520,684 - 73,537,936 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	73,520,684 - 73,537,938 (-)	Ensembl	panpan1.1		panPan2

RIMOC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	67,668,727 - 67,688,509 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	67,672,923 - 67,688,451 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	67,352,171 - 67,371,910 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	68,180,859 - 68,200,588 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	68,148,264 - 68,200,553 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	67,922,360 - 67,942,067 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	68,057,282 - 68,073,117 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	68,593,066 - 68,612,795 (-)	NCBI		UU_Cfam_GSD_1.0

Rimoc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	230,474,176 - 230,487,148 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936518	880,669 - 898,417 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936518	880,781 - 897,655 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIMOC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	26,681,716 - 26,701,443 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	26,681,637 - 26,703,719 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	27,945,956 - 27,967,987 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIMOC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	40,661,349 - 40,678,655 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	40,661,323 - 40,678,740 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	31,097,551 - 31,115,025 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rimoc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	13,050,315 - 13,068,155 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624759	13,050,001 - 13,067,231 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rimoc1
70 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	78
Count of miRNA genes:	57
Interacting mature miRNAs:	59
Transcripts:	ENSRNOT00000020829
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	11591100	56591100	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	22384627	67384627	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	35023117	80023117	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
10755434	Coatc7	Coat color QTL 7		0.04794	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	30648065	75648065	Rat
2293676	Bmd19	Bone mineral density QTL 19	10.7	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	43162366	111362592	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
2293682	Bmd24	Bone mineral density QTL 24	8.9	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	43162366	111362592	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	20304672	65304672	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	38573329	122609194	Rat
738012	Anxrr3	Anxiety related response QTL 3	3.8		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	2	9023519	54023519	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
10402051	Gdil2	Gastrointestinal dilation QTL 2			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	24903853	74786777	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	27157160	72157160	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	40067944	102785628	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	43171017	83575226	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	42804607	60653831	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	5873687	102844969	Rat
2300168	Bmd47	Bone mineral density QTL 47	6.6	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	2	20662448	65662448	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	81754745	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1357990	Ael1	Aortic elastin QTL 1	3.1	0.00091	aorta elastin amount (VT:0003905)	aortic elastin	2	19076825	64076825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
12879863	Bp402	Blood pressure QTL 402		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	41125789	56532139	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	16491740	61491740	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	35134841	88029593	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat

RH143144

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	53,190,508 - 53,190,658 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	53,813,851 - 53,814,000	NCBI	Rnor6.0
Rnor_5.0	2	72,846,778 - 72,846,927	UniSTS	Rnor5.0
RGSC_v3.4	2	53,887,439 - 53,887,588	UniSTS	RGSC3.4
Celera	2	48,868,630 - 48,868,779	UniSTS
RH 3.4 Map	2	331.5	UniSTS
Cytogenetic Map	2	q16	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001395104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000078158 ⟹ ENSRNOP00000069531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	53,189,790 - 53,203,821 (-)	Ensembl
Rnor_6.0 Ensembl	2	53,813,131 - 53,827,175 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096245 ⟹ ENSRNOP00000078326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	53,189,790 - 53,200,543 (-)	Ensembl

RefSeq Acc Id:

NM_001395104 ⟹ NP_001382033

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	54,917,383 - 54,931,430 (-)	NCBI
mRatBN7.2	2	53,189,787 - 53,203,836 (-)	NCBI

RefSeq Acc Id:

XM_017590858 ⟹ XP_017446347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	54,917,383 - 54,931,577 (-)	NCBI
mRatBN7.2	2	53,189,787 - 53,203,980 (-)	NCBI
Rnor_6.0	2	53,813,129 - 53,827,329 (-)	NCBI

Sequence:

show sequence

GGAGAGGGCCACTGGGAGGAACTCAATACCCGGAACGACCTTTGCGGGCCGGGGCGGTCGTAGCCCGGAGCCTATGTCTCCGCCCACCATCAGGGTGGGCTCCGCCCCCATTCCGCCATCCAGGCCGT
CAGGTGATCTCCTGCCCGCGTGGTCACGTGGACAGGGCGGGCGCGCCCGAGCTGGCCATGGCGGCCGCAGTGTCCGGTGTGGTGAGGCGGGTGGAAGAGCTCGGGGACCTGGCTCAGGCTCACATACA
GCACCTTAGCGAAGCCGCGGGGGAAGACGATCACTTTTTAATTCGGGCCTCTGCAGCTCTAGAAAAATTGAAACTTTTATGTGGAGAAGAGGAGGAATGTTCAAATCCATCAAATCTTTTGGAACTAT
ACACACAGCTGTGTGATTTGCTTGGGGATGAGCTACTGGAGTGCCTCTCTTGGAGACGAGGGGCCCTGCTGTATATGTATTGCCATTCTCTGACTAAGAGAAGGGAGTGGCTCCTGCGAAAATCTAAT
TTGCTTCAAAAGTACCTGGTTGATGGGATCAATTACTTGCTACAGATGCTAAATTATCGATGCCCTGTCCAGTTAAATGAAGGTGTTTCTTTCCAAGACCTAGACACAGCTAAATTACTGAGTACAGG
AATATTTAGTGATATTCATGTGCTGGCTATGATGTACAGTGGAGAAATGTGCTACTGGGGAGTAAAGCACTGCACAGATCACCAGTCAGGAAACCATGAAGTTGACACCGATGTCTTTGGAACAAGCT
GCACCACACACAGAGAACCCTTGGATTTTCGAGAAGTAGGAGAAAAGATTTTGAAGAAATATGTGTCGGTGTGTGAAGGACCTCTGAAGGAGCAGGAGTGGAACACCACCAACGCGAAGCAGATCTTA
GGCTTCTTCCAGCAGCGCTGTAGCTAGGCCTTCATGTAGGTCTCAGCTGGAAAGAAGCAAAGATTGCTGAAGTGGAAAAGATGGTTCCGAAAACAGAGATGTACTACACTGATCTTGAGACTGTTACA
CTACATAAAGATGCCCAGTGTGACTACGCTTCTCTAATGCTGTCACCTTTCCCTCTGTAGTCTTGGGTCTGTGAAGAAAGTATTCTCTAATTTCTGAAATGGCATATGTGCCATTCGAACTGAACCTG
AACTACATGTAAACCTGCCACTGGTAAGGAGGAACCCAATGTAGACGGACAGTTGTTTTCTAATATTTTATGTTATATTTTTTATTGTACTAAAATATATGTAACACAGAATCTCCTTATTTTGAAGT
ATGCATACTTCAAAGATGAAAATCAGTTTTTCTCCTTGTGTCAAATATATGGTATAGATATCAATGTAGGCAATTGGAAGATTATGACTAATAATTAGATTTCATTTCCAGTAATCTAAACATCAAAA
TATTTTAAAAATGAATCTTATTTATTTTGCTATGCATTAGTAATAATACTTAAATTATTTACTTATCCATTTTATAAATTATTTTATTTTGCTTAAAATAAAAACTACATGGTTTCTCCAATAATGAA
GGTAAAAGTCAGAGTAGAGGAGTCTCCCATTAGTTCAGATGCTTTTAGGGCACACCTTTGCATATAATGAACTTTACATATGTTTTGCCTTTCACTAGGATGGAAATGCTAAAGGCCAAAGAGCCTAG
TTTGCTGTCTTGCTCACTGTTTTTCTGCCTACCTCAAATCCTGTTGTCTTGCGATGGTCTGTATGATACGTTCCGATGCACTAGGCTTTTGTCCCAGTGGCATCTTCACATTCCCGTCATTTCTGTAA
CTGCACCTAAGCAGGAACCACACTCAGTTTCTCTTTCTGAAGTCTTAAATATTAGTAAATGATGACAATTCTCATCTTTCCAGCTTTCAAAATTTCCTTGATTTTATTGGTTTTTCTCTGCAGCTTTC
AACCTCTTCACAGGCTTCTTTCCAGTGCTCTAACCTTGAACAGTGAACCTCTTTCATGCCTTTTTTGCCCTACCCTTCATGGGGCATCACCTGAATACTGTCCTCCCTTGTTTCCTCTTCTGTCTTAC
CTGTTGGAGTCATCGTTGGCAGGCTCTCACACTGTATTATCTTGTCAGCCATTCCTTCTTAGGAGACTGAGTTTTATGGAAGGCATGCAGTCCTTCAAAGTATATTGCTACACATGTGACTTCCTGTA
AACCCTAACTGCAAGCTACTAAGGTGCCTCCCCCTCCCACTATGGTAGAGTCAAAGTTCATTGGTCACTTCTACCCTTTTTCTTTCACAGGAAGTTTAGATTCTGAGAGAATCAACTCATTTATGCAC
TTTTCTGTTTTAAAGGAGAAGAGGTTGCCAGCTTTCTGCTGAAGACTGATCTTTGTTATTTCCTTTGTTTCTCCTGTAGTTTCTCAGTTTCTGCCTGTCCTTATAAAAATTTTGTTCTCTTCTTTCTC
TCTCTTTTTCTTTACTCTAAATACTCATGTTAAGCAGTATTTTTCACAGCCATCATGGCTTTTGTCAGGCTGATTTCTGGGAACTGGAATCCCAGTCTCCTTGCTCTCTGAATTTTATTTTTAACTCC
CTATTAAATGTCTCCACTTTGACAAATACTAACTGCATGGTCTTTTTAAGTTCAATATGAGCAAATAACAAATTTTCATCTCTTATGGAAATCTTCTCTGCTTCATTTCCCTCCTGTTTTGTATGTTT
TCCCAAATAGCAAATAGAAGGTCCACTTCCCATCCTTAATTCTGCATACACTCTTATTTGTGTTCTAGACCAACAGTTTTCAGACATCAAAATCCCAGGCTTCTTTTTTATAAAATTCTGAGTAAGCA
GTGGAAGCCAAGGGATATCCCTCAGTCCCTGCCACAACTCTTGGCCTGTCTTTTTACAACCAAGATTTTTATGTAACCTAGCATTTTAGCAAGTTTTACTAGGAAAATATCGTAGCTTTCTAAATCTT
CAATGTGAATTTTAGAAGCACAGATTTCTTTACTGAATCCTGATCAATCATCATAATCAATCAAATGCTTCCACTACCTTCCCAAGCACTTACGTTTTACAGCCTTAGTACTGTTATAGACGTCACTA
TTGCTGGGCCCTTCTCTGTGGCCAGATAAGTACTTTACTGGTGTGACTACCATTAGTAATACTGTGTCTAAAGGCTTTTTTCAACCCTTTCCAGTAGAAGTTAGATGTTTCTTTAATTTCTCTCTTCC
TTTCCCATGTCACCACAGTACAAAGTATTGTAATTATTTTTTTTTACTACTGGATGAACTTCATATCTTAAAATTTTATCTTTGCATTCACTGTTAATTGTATGGTAGGTAGTAATGTTTTTTTGAAT
TAATGAGGCATGATTTGAAATGCCAAACTTTGCACAAAAGGGTTGCTGCTATTGCATTCCAAACTGCCATGCTCTCTATACCACTGGTTGATACAGCAAAAGGGAGTATGTCTTCCTCGGAGGAGTAA
AGTGTTAATTGAACACTAAACCTGAGAAAATGAGACTTTGTCTTCAGAAGCTGAGAACTTCCATTTTTGCCTTTATGACCTTTGTGTGCTCACTGGTTGGTATAATTATGAGGGTATTTCTGGGTGCT
TTTTGTACAATTTACTCCCCTTCCCCAAACAATTGAAGAACAATTTGTAGACCATAATAGTTGTAGCACTTTCTATGGTGGTGTTATAAAAGGAAAATGCATCTTTTTTTATTAATTTAATCTTGATG
AGTAAATTGTTTTATTTAGAATGAAGTAATCTCAAAATAACAAATACTCCACATAAGAACAGTAATAAGCTATAATAGATTCTTTCAACAGCTAATGTTTGCCTACAACATGTTGTATTCTGTCCTAG
GCACTGAGGGTATAGCTGTGTAAGCACCCCCCCCCCCCCCGTTATAGAGCTTTTAGTGGAGGCGACTGTACAGTATGCCAAGTGATAACACTGTAAAGCACTTAGCAGGGTGTAAGGACTACTGTGAC
TGGAGATGGGTGCTATTGTATGTAGAGTAGTTAGAAAGTTCCATCTAAGCTGCCTTCAAATTCTATCCTGTTGTTTCTCATGCCTTGTATTCAGTACACTCAGATATTTTCCTATGCTTAAGATCTTC
TCCTTTGTTGTATTTAATGTCTTTCTCATCTGTTTCTAATGCATGCTGCCTAAAGCCTTGGGTTCTTCATTCATCTCAAGTGGTTTTCTTTCTACCCTCCAGTTCCCTTTTCTATTTTCTATAAGGTT
ATTACATCTGCCCACAGAAACCAAAACTCTATAGTGTCTTTAGCATTACTTCCTATATATCTTAAACACAATGTGAGGTAGTGTTGTGTGAAACATTACATTAAGAGGTACTTAATATAGACACAACA
TATGTATTATATCATGCTGGTGTTTGGTAGCTTTTGCTTTCCTGCTTCTAGTAAAAATTTATCTTCAGTTTGAATTTTCTGCTGTTCATTAAATGTAAAATGTTATAGGATTTTCAACAATCCTTAAA
TGTTTATCATTCTTTACTCAGTATGGATTTCCTGATGTGGAGTAGACTTTAAGACTTGATTTAAGAGCCTGTCTCTTGCTATGTTTATAGGCTGTCTGGCTGGCTGCTGTGCATTATTTGATGTTAAG
GCGCATATGGTGACATCCTCTTACCTTTGCATACAGTGGAGAGAGGTGAAAGTCATGACTAAGAGGGCACCATAAAAGATACATTCCCAGCTTCAGTCTCGTGCTCAGTATTGTGATGTTCATTAAAG
TATCAACTGTGTCTGAAGGTGTTCTCAGTGATCTTCATGATGTTTTCAAAACCCACTGCTACTAACATGGTCCACTTGTACATTGCTTGACTCCTTGGGCCCTTTTATAACTCTATGAGGATACTTCA
TCTGCCACAGTATCCAGGATTCCATAGTTCTCTAGTATTACTTACCCTGAATTTATTTAATATAAAATGAAATATATTATAGAAGTATTATATCAATATAAGCTTAAGATAGCCAGAATTAAAAGTAT
TCATTATGTATTATGCCGGCGTTTAGTAGTTTTGTTTTTGCAACTTTTAGTGACATTTTCCAGCTACAGTGTTTTGGAGCATATGATTAATAAAATAAAGTGACATTCCCCTA

hide sequence


Protein RefSeqs	NP_001382033	(Get FASTA)	NCBI Sequence Viewer
	XP_017446347	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75741	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069531.2
	ENSRNOP00000078326.1

RefSeq Acc Id:

XP_017446347 ⟸ XM_017590858

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAAAVSGVVRRVEELGDLAQAHIQHLSEAAGEDDHFLIRASAALEKLKLLCGEEEECSNPSNLLELYTQLCDLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSNLLQKYLVDGINYLLQMLNY
RCPVQLNEGVSFQDLDTAKLLSTGIFSDIHVLAMMYSGEMCYWGVKHCTDHQSGNHEVDTDVFGTSCTTHREPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILGFFQQRCS

hide sequence

Ensembl Acc Id:

ENSRNOP00000069531 ⟸ ENSRNOT00000078158

Ensembl Acc Id:

ENSRNOP00000078326 ⟸ ENSRNOT00000096245

RefSeq Acc Id:	NP_001382033 ⟸ NM_001395104
- UniProtKB:	A0A0G2JVL5 (UniProtKB/TrEMBL), A0A8I5ZKP0 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JVL5-F1-model_v2	AlphaFold	A0A0G2JVL5	1-251	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13691164

Promoter ID:

EPDNEW_R1689

Type:

multiple initiation site

Name:

RGD1305938_1

Description:

similar to expressed sequence AW549877

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	53,827,163 - 53,827,223	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-54193	BioCyc
Ensembl Genes	ENSRNOG00000052775	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000078158.2	UniProtKB/TrEMBL
	ENSRNOT00000096245.1	UniProtKB/TrEMBL
InterPro	C5orf51	UniProtKB/TrEMBL
NCBI Gene	310362	ENTREZGENE
PANTHER	PTHR28494	UniProtKB/TrEMBL
	UPF0600 PROTEIN C5ORF51	UniProtKB/TrEMBL
Pfam	DUF5561	UniProtKB/TrEMBL
PhenoGen	Rimoc1	PhenoGen
RatGTEx	ENSRNOG00000052775	RatGTEx
UniProt	A0A0G2JVL5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZKP0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-10-22	Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	RGD1305938	similar to expressed sequence AW549877	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1305938	similar to expressed sequence AW549877	RGD1305938_predicted	similar to expressed sequence AW549877 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1305938_predicted	similar to expressed sequence AW549877 (predicted)	LOC310362_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC310362_predicted	similar to expressed sequence AW549877 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar