Basp1 (brain abundant, membrane attached signal protein 1) - Rat Genome Database

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Gene: Basp1 (brain abundant, membrane attached signal protein 1) Rattus norvegicus
Analyze
Symbol: Basp1
Name: brain abundant, membrane attached signal protein 1
RGD ID: 621491
Description: Predicted to enable several functions, including calmodulin binding activity; transcription cis-regulatory region binding activity; and transcription corepressor activity. Predicted to be involved in several processes, including podocyte differentiation; protein homooligomerization; and substantia nigra development. Located in cytoplasm. Orthologous to human BASP1 (brain abundant membrane attached signal protein 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 22 kDa neuronal tissue-enriched acidic protein; brain acid soluble protein 1; brain acidic membrane protein; hypothetical protein LOC100364588; LOC100364588; NAP22; neuronal axonal membrane protein NAP-22
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8277,546,628 - 77,594,297 (-)NCBIGRCr8
mRatBN7.2275,816,130 - 75,863,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl275,816,122 - 75,864,043 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx282,949,754 - 82,997,875 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0281,071,464 - 81,119,589 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0276,077,273 - 76,124,106 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0277,586,424 - 77,632,626 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl277,586,424 - 77,632,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0297,311,340 - 97,358,165 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4276,877,616 - 76,927,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1276,805,848 - 76,855,954 (-)NCBI
Celera271,538,327 - 71,584,897 (-)NCBICelera
Cytogenetic Map2q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-lariciresinol  (ISO)
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(-)-lariciresinol  (ISO)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
aminoglutethimide  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
buta-1,3-diene  (ISO)
C60 fullerene  (EXP)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carnosic acid  (ISO)
casticin  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
cisplatin  (EXP)
clobetasol  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glycidol  (EXP)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
isotretinoin  (ISO)
lipopolysaccharide  (ISO)
Mesaconitine  (EXP)
N-nitrosodiethylamine  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
PhIP  (EXP)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
tebuconazole  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
tremolite asbestos  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell junction  (IEA,ISO)
chromatin  (IEA,ISO)
COP9 signalosome  (IEA,ISO)
cytoplasm  (IBA,IDA,IEA,ISO,ISS)
growth cone  (IEA)
nuclear matrix  (IEA,ISO)
nuclear speck  (IEA,ISO,ISS)
nucleus  (IBA,ISO,ISS)
plasma membrane  (IEA,ISO)
PML body  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Motor, sensory and autonomic nerve terminals containing NAP-22 immunoreactivity in the rat muscle. Iino S, etal., Brain Res 2004 Mar 26;1002(1-2):142-50.
3. Localization of the Cl(-)-ATPase activity on NAP-22 enriched membrane microdomain (raft) of rat brain. Maekawa S and Taguchi K, Neurosci Lett 2004 May 20;362(2):158-61.
4. Purification and molecular cloning of a novel acidic calmodulin binding protein from rat brain. Maekawa S, etal., J Biol Chem 1993 Jun 25;268(18):13703-9.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Subcellular and regional location of "brain" proteins BASP1 and MARCKS in kidney and testis. Mosevitsky M and Silicheva I, Acta Histochem. 2011 Jan;113(1):13-8. doi: 10.1016/j.acthis.2009.07.002. Epub 2009 Aug 15.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8193160   PMID:9310187   PMID:14701728   PMID:16854843   PMID:18521709   PMID:18850735   PMID:19050011   PMID:19056867   PMID:19190083   PMID:19267422   PMID:21764106   PMID:22871113  
PMID:22926577   PMID:23376485   PMID:23376695   PMID:23533145   PMID:23579388   PMID:25470949   PMID:29476059   PMID:29604406   PMID:31505169   PMID:31686426   PMID:35352799  


Genomics

Comparative Map Data
Basp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8277,546,628 - 77,594,297 (-)NCBIGRCr8
mRatBN7.2275,816,130 - 75,863,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl275,816,122 - 75,864,043 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx282,949,754 - 82,997,875 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0281,071,464 - 81,119,589 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0276,077,273 - 76,124,106 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0277,586,424 - 77,632,626 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl277,586,424 - 77,632,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0297,311,340 - 97,358,165 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4276,877,616 - 76,927,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1276,805,848 - 76,855,954 (-)NCBI
Celera271,538,327 - 71,584,897 (-)NCBICelera
Cytogenetic Map2q22NCBI
BASP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38517,216,823 - 17,276,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl517,065,598 - 17,276,843 (+)EnsemblGRCh38hg38GRCh38
GRCh37517,216,932 - 17,276,943 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36517,270,750 - 17,329,943 (+)NCBINCBI36Build 36hg18NCBI36
Build 34517,270,749 - 17,329,941NCBI
Celera517,243,172 - 17,302,814 (+)NCBICelera
Cytogenetic Map5p15.1NCBI
HuRef517,189,229 - 17,249,076 (+)NCBIHuRef
CHM1_1517,216,832 - 17,276,803 (+)NCBICHM1_1
T2T-CHM13v2.0517,156,199 - 17,216,216 (+)NCBIT2T-CHM13v2.0
Basp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391525,363,363 - 25,413,850 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1525,363,363 - 25,413,850 (-)EnsemblGRCm39 Ensembl
GRCm381525,363,277 - 25,413,764 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1525,363,277 - 25,413,764 (-)EnsemblGRCm38mm10GRCm38
MGSCv371525,293,032 - 25,343,519 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361525,308,954 - 25,309,634 (-)NCBIMGSCv36mm8
Celera1526,139,197 - 26,140,893 (-)NCBICelera
Cytogenetic Map15B1NCBI
cM Map159.16NCBI
Basp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554266,149,756 - 6,193,209 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554266,149,756 - 6,193,222 (+)NCBIChiLan1.0ChiLan1.0
BASP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2417,451,370 - 17,511,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1515,604,981 - 15,664,946 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0517,521,054 - 17,580,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1517,352,374 - 17,410,703 (+)NCBIpanpan1.1PanPan1.1panPan2
BASP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1486,360,641 - 86,417,408 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl486,361,608 - 86,382,715 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha485,879,057 - 85,935,776 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0486,997,031 - 87,053,929 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1486,521,790 - 86,579,229 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0486,758,502 - 86,813,946 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0487,613,831 - 87,671,673 (-)NCBIUU_Cfam_GSD_1.0
Basp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213210,759,454 - 210,814,078 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648019,695,949 - 19,812,681 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BASP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1166,384,322 - 6,440,507 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2166,829,357 - 6,866,842 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BASP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1416,871,488 - 16,937,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl416,936,178 - 16,936,858 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606411,538,507 - 11,598,034 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Basp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475113,859,959 - 13,999,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475113,959,095 - 13,998,887 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Basp1
311 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:66
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000072233, ENSRNOT00000073915
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)27478666494359546Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25760561276539510Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat

Markers in Region
D2Rat203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2275,859,242 - 75,859,387 (+)MAPPERmRatBN7.2
Rnor_6.0277,628,068 - 77,628,212NCBIRnor6.0
Rnor_5.0297,353,607 - 97,353,751UniSTSRnor5.0
RGSC_v3.4276,923,162 - 76,923,307RGDRGSC3.4
RGSC_v3.4276,923,163 - 76,923,307UniSTSRGSC3.4
RGSC_v3.1276,851,396 - 76,851,540RGD
Celera271,580,339 - 71,580,483UniSTS
RH 3.4 Map2498.2UniSTS
RH 3.4 Map2498.2RGD
SHRSP x BN Map229.7798UniSTS
SHRSP x BN Map229.7798RGD
Cytogenetic Map2q22UniSTS
RH134721  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2275,864,258 - 75,864,445 (+)MAPPERmRatBN7.2
Rnor_6.0277,633,084 - 77,633,270NCBIRnor6.0
Rnor_5.0297,358,623 - 97,358,809UniSTSRnor5.0
RGSC_v3.4276,928,179 - 76,928,365UniSTSRGSC3.4
Celera271,585,355 - 71,585,541UniSTS
RH 3.4 Map2498.2UniSTS
Cytogenetic Map2q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000073915   ⟹   ENSRNOP00000071894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl277,586,424 - 77,632,628 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106856   ⟹   ENSRNOP00000085289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl275,816,122 - 75,864,043 (-)Ensembl
RefSeq Acc Id: NM_022300   ⟹   NP_071636
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8277,547,399 - 77,594,297 (-)NCBI
mRatBN7.2275,816,901 - 75,863,801 (-)NCBI
Rnor_6.0277,586,424 - 77,632,626 (-)NCBI
Rnor_5.0297,311,340 - 97,358,165 (-)NCBI
RGSC_v3.4276,877,616 - 76,927,721 (-)RGD
Celera271,538,327 - 71,584,897 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103039   ⟹   XP_038958967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8277,546,628 - 77,560,228 (-)NCBI
mRatBN7.2275,816,130 - 75,829,730 (-)NCBI
RefSeq Acc Id: NP_071636   ⟸   NM_022300
- UniProtKB: A0A8I6A304 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071894   ⟸   ENSRNOT00000073915
RefSeq Acc Id: XP_038958967   ⟸   XM_039103039
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A304 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085289   ⟸   ENSRNOT00000106856

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q05175-F1-model_v2 AlphaFold Q05175 1-220 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691199
Promoter ID:EPDNEW_R1724
Type:initiation region
Name:Basp1_1
Description:brain abundant, membrane attached signal protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0277,632,608 - 77,632,668EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621491 AgrOrtholog
BioCyc Gene G2FUF-53951 BioCyc
Ensembl Genes ENSRNOG00000046313 Ensembl
  ENSRNOG00000066065 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000106856.1 UniProtKB/TrEMBL
InterPro BASP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64160 UniProtKB/Swiss-Prot
NCBI Gene 64160 ENTREZGENE
PANTHER BRAIN ACID SOLUBLE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23212 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BASP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Basp1 PhenoGen
RatGTEx ENSRNOG00000046313 RatGTEx
  ENSRNOG00000066065 RatGTEx
UniProt A0A8I6A304 ENTREZGENE, UniProtKB/TrEMBL
  A6JMW0_RAT UniProtKB/TrEMBL
  A6JMW1_RAT UniProtKB/TrEMBL
  BASP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-04-17 Basp1  brain abundant, membrane attached signal protein 1  LOC100364588  hypothetical protein LOC100364588  Data merged from RGD:2320772 737654 PROVISIONAL
2010-05-05 LOC100364588  hypothetical protein LOC100364588      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Basp1  brain abundant, membrane attached signal protein 1    brain acidic membrane protein  Name updated 1299863 APPROVED
2002-08-07 Basp1  brain acidic membrane protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in brain 632255
gene_homology NH2-terminal 50-amino acid sequence highly homologous to chicken CAP-23 protein 632255
gene_protein Ca(2+)-dependent calmodulin binding 632255