Basp1 (brain abundant membrane attached signal protein 1) - Rat Genome Database

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Gene: Basp1 (brain abundant membrane attached signal protein 1) Heterocephalus glaber
Analyze
Symbol: Basp1
Name: brain abundant membrane attached signal protein 1
RGD ID: 18911748
Description: ENCODES a protein that exhibits calmodulin binding (ortholog); protein domain specific binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); podocyte differentiation (ortholog); protein homooligomerization (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cell junction (ortholog); chromatin (ortholog); COP9 signalosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: brain acid soluble protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475113,859,959 - 13,999,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475113,959,095 - 13,998,887 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Basp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475113,859,959 - 13,999,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475113,959,095 - 13,998,887 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BASP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38517,216,823 - 17,276,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl517,065,598 - 17,276,843 (+)EnsemblGRCh38hg38GRCh38
GRCh37517,216,932 - 17,276,943 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36517,270,750 - 17,329,943 (+)NCBINCBI36Build 36hg18NCBI36
Build 34517,270,749 - 17,329,941NCBI
Celera517,243,172 - 17,302,814 (+)NCBICelera
Cytogenetic Map5p15.1NCBI
HuRef517,189,229 - 17,249,076 (+)NCBIHuRef
CHM1_1517,216,832 - 17,276,803 (+)NCBICHM1_1
T2T-CHM13v2.0517,156,199 - 17,216,216 (+)NCBIT2T-CHM13v2.0
Basp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391525,363,363 - 25,413,850 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1525,363,363 - 25,413,850 (-)EnsemblGRCm39 Ensembl
GRCm381525,363,277 - 25,413,764 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1525,363,277 - 25,413,764 (-)EnsemblGRCm38mm10GRCm38
MGSCv371525,293,032 - 25,343,519 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361525,308,954 - 25,309,634 (-)NCBIMGSCv36mm8
Celera1526,139,197 - 26,140,893 (-)NCBICelera
Cytogenetic Map15B1NCBI
cM Map159.16NCBI
Basp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8277,546,628 - 77,594,297 (-)NCBIGRCr8
mRatBN7.2275,816,130 - 75,863,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl275,816,122 - 75,864,043 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx282,949,754 - 82,997,875 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0281,071,464 - 81,119,589 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0276,077,273 - 76,124,106 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0277,586,424 - 77,632,626 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl277,586,424 - 77,632,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0297,311,340 - 97,358,165 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4276,877,616 - 76,927,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1276,805,848 - 76,855,954 (-)NCBI
Celera271,538,327 - 71,584,897 (-)NCBICelera
Cytogenetic Map2q22NCBI
Basp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554266,149,756 - 6,193,209 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554266,149,756 - 6,193,222 (+)NCBIChiLan1.0ChiLan1.0
BASP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2417,451,370 - 17,511,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1515,604,981 - 15,664,946 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0517,521,054 - 17,580,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1517,352,374 - 17,410,703 (+)NCBIpanpan1.1PanPan1.1panPan2
BASP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1486,360,641 - 86,417,408 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl486,361,608 - 86,382,715 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha485,879,057 - 85,935,776 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0486,997,031 - 87,053,929 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1486,521,790 - 86,579,229 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0486,758,502 - 86,813,946 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0487,613,831 - 87,671,673 (-)NCBIUU_Cfam_GSD_1.0
Basp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213210,759,454 - 210,814,078 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648019,695,949 - 19,812,681 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BASP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1166,384,322 - 6,440,507 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2166,829,357 - 6,866,842 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BASP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1416,871,488 - 16,937,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl416,936,178 - 16,936,858 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606411,538,507 - 11,598,034 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000007475   ⟹   ENSHGLP00000007390
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475113,859,959 - 13,999,066 (+)Ensembl
RefSeq Acc Id: XM_021258634   ⟹   XP_021114293
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475113,959,095 - 13,998,887 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021114293 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021114293   ⟸   XM_021258634
RefSeq Acc Id: ENSHGLP00000007390   ⟸   ENSHGLT00000007475


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005381 Ensembl
NCBI Gene Basp1 ENTREZGENE