D2Rat201 Marker Search Result - Rat Genome Database

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Marker: D2Rat201

Symbol: D2Rat201
Previously known as: oxsts10464; R0224-B05; 
RGD ID: 41334
Expected Size: 183 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8251,389,900 - 51,390,083 (+)Marker Load Pipeline
mRatBN7.2249,657,069 - 49,657,252 (+)MAPPERmRatBN7.2
Rnor_6.0250,260,210 - 50,260,392NCBIRnor6.0
Rnor_5.0268,633,684 - 68,633,866UniSTSRnor5.0
RGSC_v3.4249,691,463 - 49,691,646RGDRGSC3.4
RGSC_v3.4249,691,464 - 49,691,646UniSTSRGSC3.4
RGSC_v3.1249,619,697 - 49,619,879RGD
Celera245,357,036 - 45,357,216UniSTS
RH 3.4 Map2335.0UniSTS
RH 3.4 Map2335.0RGD
RH 2.0 Map2303.0RGD
SHRSP x BN Map219.5698RGD
Cytogenetic Map2q15UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   WF.COP-(D2Mit29-D2Rat201)/Uwm   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Sffal3  
Genes:   Hcn1  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer GCTAACTAGAATGCATTTCAAAATT
Reverse Primer GCAACCACAAAAGGAGAAGG
 
Template 
ACGGCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACACCATTCTAAGG
ACCCACAAGATGCCTCAGCAGGTAAACACGATTGATGTAACAGCCTAGGCCTGTTCATCTGAGT
TCAGTCCTTGGCAACCACAAAAGGAGAAGGAAGAGAATCAATTTGCAGTCTCTGACCCTCACCT
GCCAGAGTGGCATATAAGATCTGTGCCCAGAGACCTCACCACACACCACACACACACACACACA
CACACACACACACACACACACACACAATCAAATTTTGAAATGCATTCTAGTTAGCTATTTTTTC
TTTAAACAAATGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAA
ATTGTTATCCGCTCACAATTCCACCCAACATACGAGCCGGAAGCATAAGTGTAAAGCCCTGGGG
TGCTAATGAGTGGAGCTAACCCACTTAATTGGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGA
AACTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGG
GCGNAGGGTGGTTTTCTTNCACAGTGAGAGGNNACACTGANTCCTTCACGCTGGCTGAGAAGTT
GCA
Strain, Expected Size(s)

ACI/N 176 AVN/Orl 176 BBDP/Rhw 176
BBDR/Rhw 176 BC/CpbU 188 BDIX/Han 176
BN-Lx/Cub 186 BN/SsNHsd 186 BP/Cub 176
BUF/Pit 176 COP/OlaHsd 176 DA/PitN 176
DON/Melb 164 F344/Pit 164 FHH/Eur 188
GH/Omr 164 GK/KyoSwe 176 IS/Kyo 176
LE/Mol 188 LEW/Pit 176 LH/Mav 176
LN/Mav 164 LOU/CHan 188 M520/N 188
MHS/Gib 176 MNR/N 174 MNRA/N 174
MNS/Gib 188 MR/Pit 174 NEDH/K 188
NP9 176 ODU/N 176 OKA/Wsl 176
OM/Ztm 188 P5C 176 PVG/Pit 176
SD/Rij 188 SHR/OlaHsd 176 SHRSP/Riv 176
SR/Jr 164 SS/Jr 164 WAG/RijKyo 164
WF/Pit 188 WIST/Nhg 176 WKY/OlaHsd 176
WN/N 176 WTC/Kyo 176


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
620688Hcn1hyperpolarization-activated cyclic nucleotide-gated potassium channel 124949577149899983Rat
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat

1 to 10 of 46 rows


Database
Acc Id
Source(s)
NCBI Gene 84390 UniSTS