Schip1 (schwannomin interacting protein 1) - Rat Genome Database

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Gene: Schip1 (schwannomin interacting protein 1) Rattus norvegicus
Analyze
Symbol: Schip1
Name: schwannomin interacting protein 1
RGD ID: 1309962
Description: Predicted to enable identical protein binding activity. Predicted to be involved in positive regulation of hippo signaling. Predicted to act upstream of or within several processes, including animal organ development; face morphogenesis; and fibroblast migration. Predicted to be located in cytosol and nuclear body. Predicted to be active in cell junction and plasma membrane. Orthologous to several human genes including SCHIP1 (schwannomin interacting protein 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; amphetamine; beta-naphthoflavone.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC295105
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22152,127,171 - 152,888,587 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl2172,312,298 - 172,459,165 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02172,312,290 - 173,087,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02192,261,956 - 192,275,730 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02191,602,249 - 191,796,738 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42157,848,639 - 158,631,796 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12158,406,527 - 158,581,774 (+)NCBI
Celera2146,498,127 - 147,247,765 (+)NCBICelera
Cytogenetic Map2q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell junction  (IBA,ISO)
cytosol  (ISO)
nuclear body  (ISO)
nucleoplasm  (ISO)
plasma membrane  (IBA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:10669747   PMID:12477932   PMID:17143286   PMID:19056881   PMID:20195357   PMID:25950943  


Genomics

Comparative Map Data
Schip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22152,127,171 - 152,888,587 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl2172,312,298 - 172,459,165 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02172,312,290 - 173,087,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02192,261,956 - 192,275,730 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02191,602,249 - 191,796,738 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42157,848,639 - 158,631,796 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12158,406,527 - 158,581,774 (+)NCBI
Celera2146,498,127 - 147,247,765 (+)NCBICelera
Cytogenetic Map2q32NCBI
SCHIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3159,839,861 - 159,897,360 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl3158,962,235 - 159,897,366 (+)EnsemblGRCh38hg38GRCh38
GRCh383159,273,244 - 159,897,359 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373158,991,033 - 159,615,148 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363160,474,238 - 161,097,833 (+)NCBINCBI36hg18NCBI36
Build 343160,474,245 - 161,097,841NCBI
Celera3157,413,298 - 158,036,888 (+)NCBI
Cytogenetic Map3q25.32-q25.33NCBI
HuRef3156,387,582 - 157,011,650 (+)NCBIHuRef
CHM1_13158,953,931 - 159,578,052 (+)NCBICHM1_1
Schip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39367,972,135 - 68,533,815 (+)NCBIGRCm39mm39
GRCm39 Ensembl367,972,135 - 68,533,814 (+)Ensembl
GRCm38368,064,802 - 68,626,482 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl368,064,802 - 68,626,481 (+)EnsemblGRCm38mm10GRCm38
MGSCv37367,696,154 - 68,430,404 (+)NCBIGRCm37mm9NCBIm37
MGSCv36368,660,436 - 68,714,362 (+)NCBImm8
Celera368,016,690 - 68,758,776 (+)NCBICelera
Cytogenetic Map3E1NCBI
Schip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544810,364,261 - 10,502,799 (+)NCBIChiLan1.0ChiLan1.0
SCHIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13164,357,503 - 164,969,361 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3164,837,723 - 164,968,769 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03156,307,829 - 156,919,728 (+)NCBIMhudiblu_PPA_v0panPan3

Position Markers
D2Rat164  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,195,074 - 152,195,315 (-)MAPPERmRatBN7.2
Rnor_6.02173,019,958 - 173,020,198NCBIRnor6.0
Rnor_5.02192,362,243 - 192,362,483UniSTSRnor5.0
RGSC_v3.42157,916,864 - 157,917,105RGDRGSC3.4
RGSC_v3.42157,916,865 - 157,917,105UniSTSRGSC3.4
RGSC_v3.12157,866,827 - 157,867,068RGD
Celera2146,566,029 - 146,566,267UniSTS
RH 3.4 Map2998.3RGD
RH 3.4 Map2998.3UniSTS
RH 2.0 Map2717.9RGD
SHRSP x BN Map263.9498RGD
Cytogenetic Map2q31UniSTS
D2Mco7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,538,025 - 152,538,167 (-)MAPPERmRatBN7.2
Rnor_6.02172,671,254 - 172,671,395NCBIRnor6.0
Rnor_5.02192,008,113 - 192,008,254UniSTSRnor5.0
RGSC_v3.42158,273,500 - 158,273,642RGDRGSC3.4
RGSC_v3.42158,273,501 - 158,273,642UniSTSRGSC3.4
RGSC_v3.12158,223,463 - 158,223,605RGD
Celera2146,902,236 - 146,902,377UniSTS
Cytogenetic Map2q31UniSTS
D2Mco8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,413,072 - 152,413,311 (-)MAPPERmRatBN7.2
Rnor_6.02172,795,683 - 172,795,921NCBIRnor6.0
Rnor_5.02192,132,537 - 192,132,775UniSTSRnor5.0
RGSC_v3.42158,146,823 - 158,147,062RGDRGSC3.4
RGSC_v3.42158,146,824 - 158,147,062UniSTSRGSC3.4
RGSC_v3.12158,096,786 - 158,097,025RGD
Celera2146,777,810 - 146,778,054UniSTS
Cytogenetic Map2q31UniSTS
D2Mco14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,537,946 - 152,538,164 (-)MAPPERmRatBN7.2
Rnor_6.02172,671,257 - 172,671,474NCBIRnor6.0
Rnor_5.02192,008,116 - 192,008,333UniSTSRnor5.0
RGSC_v3.42158,273,421 - 158,273,639RGDRGSC3.4
RGSC_v3.42158,273,422 - 158,273,639UniSTSRGSC3.4
RGSC_v3.12158,223,384 - 158,223,602RGD
Celera2146,902,157 - 146,902,374UniSTS
Cytogenetic Map2q31UniSTS
D2Got334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,312,197 - 152,312,341 (-)MAPPERmRatBN7.2
Rnor_6.02172,908,577 - 172,908,720NCBIRnor6.0
Rnor_5.02192,245,584 - 192,245,727UniSTSRnor5.0
RGSC_v3.42158,045,761 - 158,045,904UniSTSRGSC3.4
Celera2146,677,377 - 146,677,532UniSTS
Cytogenetic Map2q31UniSTS
D2Got379  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,127,600 - 152,127,792 (-)MAPPERmRatBN7.2
Rnor_6.02173,086,615 - 173,086,806NCBIRnor6.0
Rnor_5.02192,428,843 - 192,429,034UniSTSRnor5.0
RGSC_v3.42157,849,069 - 157,849,260UniSTSRGSC3.4
Celera2146,498,557 - 146,498,748UniSTS
Cytogenetic Map2q31UniSTS
BF403845  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,296,390 - 152,296,551 (-)MAPPERmRatBN7.2
Rnor_6.02172,924,301 - 172,924,461NCBIRnor6.0
Rnor_5.02192,261,308 - 192,261,468UniSTSRnor5.0
RGSC_v3.42158,029,956 - 158,030,116UniSTSRGSC3.4
Celera2146,661,571 - 146,661,731UniSTS
RH 3.4 Map2999.1UniSTS
Cytogenetic Map2q31UniSTS
RH137633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,500,287 - 152,500,434 (-)MAPPERmRatBN7.2
Rnor_6.02172,708,352 - 172,708,498NCBIRnor6.0
Rnor_5.02192,045,402 - 192,045,548UniSTSRnor5.0
RGSC_v3.42158,236,307 - 158,236,453UniSTSRGSC3.4
Celera2146,865,002 - 146,865,148UniSTS
Cytogenetic Map2q31UniSTS
AI170339  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,744,073 - 152,744,169 (-)MAPPERmRatBN7.2
Rnor_6.02172,465,806 - 172,465,901NCBIRnor6.0
Rnor_5.02191,803,368 - 191,803,463UniSTSRnor5.0
RGSC_v3.42158,481,573 - 158,481,668UniSTSRGSC3.4
Celera2147,107,387 - 147,107,482UniSTS
RH 3.4 Map21001.8UniSTS
Cytogenetic Map2q31UniSTS
G44760  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,775,630 - 152,775,876 (-)MAPPERmRatBN7.2
Rnor_6.02172,434,032 - 172,434,277NCBIRnor6.0
Rnor_5.02191,771,360 - 191,771,605UniSTSRnor5.0
RGSC_v3.42158,513,404 - 158,513,649UniSTSRGSC3.4
Celera2147,138,867 - 147,139,112UniSTS
Cytogenetic Map2q31UniSTS
D17S1446E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,832,101 - 152,832,510 (-)MAPPERmRatBN7.2
Rnor_6.02172,367,777 - 172,368,185NCBIRnor6.0
Rnor_5.02191,716,355 - 191,716,763UniSTSRnor5.0
Cytogenetic Map2q31UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242776916195645082Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)2157914311204022555Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2140566078217498545Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2147522550217498710Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246537589217498710Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243133606217498545Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243133606217498545Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2149114878225501939Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256244671217498710Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141583337217498710Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266828049217498710Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147122993240020001Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2147122993240020001Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2142053350204585731Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2157914409217498545Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2116075644228737869Rat
631520Bp73Blood pressure QTL 730.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2153799203181987474Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2169852800217498545Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2155965557254121739Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2155965557237742948Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2161745602206745602Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2172795683189857032Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2116075644228737869Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2118446646227707979Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2138901276217498710Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243149788198704485Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)275687495221880419Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2158159186217498710Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283819608239166203Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266828236243550655Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283819608243901375Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2158159186217498710Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2142053350228984665Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2118446793228582621Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2118446646200453484Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2118446646200453484Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2169852670207612467Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2133399373173020198Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278321410217498710Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2159585731204585731Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2149614623198704357Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143447078188447078Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2169852670243026643Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283754907237610852Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2149614466205573168Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2149614466205573168Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2172795683189857032Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2172795683199696953Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)216679272245624402Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2172795683199696953Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2172795683189857032Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2172795683199696953Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2172795683199696953Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2172795683189857032Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2172795683189857032Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2172795683199696953Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2172795683189857032Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:95
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000057473
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 43 2 2 4 2 8 11 74 22 33 11 8
Low 3 52 36 15 36 13 8
Below cutoff 3 3 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000057473   ⟹   ENSRNOP00000054283
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2172,312,332 - 172,459,165 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085876   ⟹   ENSRNOP00000069226
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2172,312,298 - 172,361,779 (-)Ensembl
RefSeq Acc Id: NM_001100666   ⟹   NP_001094136
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,127,171 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 173,087,236 (-)NCBI
Rnor_5.02191,602,249 - 191,796,738 (-)NCBI
Rnor_5.02192,261,956 - 192,275,730 (-)NCBI
RGSC_v3.42157,848,639 - 158,631,796 (+)RGD
Celera2146,498,127 - 147,247,765 (+)RGD
Sequence:
RefSeq Acc Id: XM_008761079   ⟹   XP_008759301
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,749,720 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 172,463,409 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761080   ⟹   XP_008759302
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,750,448 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 172,459,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761082   ⟹   XP_008759304
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,838,285 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 172,364,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761083   ⟹   XP_008759305
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,827,172 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 172,373,132 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102019   ⟹   XP_038957947
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,749,540 - 152,888,587 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001094136   ⟸   NM_001100666
- UniProtKB: Q562A8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759301   ⟸   XM_008761079
- Peptide Label: isoform X2
- UniProtKB: F1M6Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759302   ⟸   XM_008761080
- Peptide Label: isoform X2
- UniProtKB: F1M6Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759305   ⟸   XM_008761083
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008759304   ⟸   XM_008761082
- Peptide Label: isoform X3
- UniProtKB: B5DFD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000054283   ⟸   ENSRNOT00000057473
RefSeq Acc Id: ENSRNOP00000069226   ⟸   ENSRNOT00000085876
RefSeq Acc Id: XP_038957947   ⟸   XM_039102019
- Peptide Label: isoform X1
Protein Domains
SCHIP-1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691382
Promoter ID:EPDNEW_R1903
Type:single initiation site
Name:Schip1_1
Description:schwannomin interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02172,361,725 - 172,361,785EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309962 AgrOrtholog
Ensembl Genes ENSRNOG00000009276 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000054283 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000069226 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057473 UniProtKB/TrEMBL
  ENSRNOT00000085876 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7312620 IMAGE-MGC_LOAD
InterPro SCHIP_1 UniProtKB/TrEMBL
  SCHIP_1 UniProtKB/TrEMBL
KEGG Report rno:295105 UniProtKB/TrEMBL
MGC_CLONE MGC:109287 IMAGE-MGC_LOAD
NCBI Gene 295105 ENTREZGENE
PANTHER PTHR13103 UniProtKB/TrEMBL
Pfam SCHIP-1 UniProtKB/TrEMBL
PhenoGen Schip1 PhenoGen
UniProt B5DFD3 ENTREZGENE, UniProtKB/TrEMBL
  F1M6Q1 ENTREZGENE, UniProtKB/TrEMBL
  Q562A8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Schip1  schwannomin interacting protein 1  Schip1_predicted  schwannomin interacting protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Schip1_predicted  schwannomin interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED