Schip1 (schwannomin interacting protein 1)

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Gene: Schip1 (schwannomin interacting protein 1) Rattus norvegicus

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Symbol:

Schip1

Name:

schwannomin interacting protein 1

RGD ID:

1309962

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in positive regulation of hippo signaling. Predicted to act upstream of or within several processes, including face morphogenesis; fibroblast migration; and luteinization. Predicted to be located in cytosol and nuclear body. Predicted to be active in cell junction and plasma membrane. Orthologous to human IQCJ-SCHIP1 (IQCJ-SCHIP1 readthrough) and SCHIP1 (schwannomin interacting protein 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC295105; schwannomin-interacting protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCHIP1 (schwannomin interacting protein 1)	HGNC	EggNOG, Ensembl, Inparanoid, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Schip1 (schwannomin interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Schip1 (schwannomin interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCHIP1 (schwannomin interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	IQCJ-SCHIP1 (IQCJ-SCHIP1 readthrough)	HGNC	EggNOG, HomoloGene, Panther, Treefam
Alliance orthologs ³
Homo sapiens (human):	SCHIP1 (schwannomin interacting protein 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Schip1 (schwannomin interacting protein 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	IQCJ-SCHIP1 (IQCJ-SCHIP1 readthrough)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Iqschfp (Iqcj and Schip1 fusion protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	schip1 (schwannomin interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:153615	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	F35H12.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Schip1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	schip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	154,437,217 - 155,198,560 (+)	NCBI		GRCr8
mRatBN7.2	2	152,127,171 - 152,888,587 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	152,126,953 - 152,888,585 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	159,254,429 - 160,014,724 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	157,304,939 - 158,065,238 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	151,937,697 - 152,698,002 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	172,312,290 - 173,087,236 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	172,312,298 - 172,459,165 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	192,261,956 - 192,275,730 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	191,602,249 - 191,796,738 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	157,848,639 - 158,631,796 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	158,406,527 - 158,581,774 (+)	NCBI
Celera	2	146,498,127 - 147,247,765 (+)	NCBI		Celera
Cytogenetic Map	2	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial meningioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetazolamide (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

bortezomib (ISO)

calcium silicate (ISO)

cantharidin (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

clotrimazole (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP,ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

furan (EXP)

genistein (ISO)

herbicide (ISO)

L-methionine (ISO)

lead diacetate (ISO)

mesotrione (ISO)

methapyrilene (ISO)

methimazole (EXP)

mitoxantrone (ISO)

N-nitrosodiethylamine (EXP)

paracetamol (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

Tesaglitazar (EXP)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

estrogen metabolic process (ISO)

face morphogenesis (ISO)

female gonad development (ISO)

fibroblast migration (ISO)

kidney development (ISO)

luteinization (ISO)

platelet-derived growth factor receptor signaling pathway (ISO)

positive regulation of hippo signaling (IBA)

post-embryonic development (ISO)

roof of mouth development (ISO)

skeletal system morphogenesis (ISO)

smooth muscle tissue development (ISO)

Cellular Component

cell junction (IBA,ISO)

cytosol (ISO)

nuclear body (ISO)

nucleoplasm (ISO)

plasma membrane (IBA,ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10669747	PMID:12477932	PMID:17143286	PMID:19056881	PMID:20195357	PMID:25950943

Genomics

Comparative Map Data

Schip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	154,437,217 - 155,198,560 (+)	NCBI		GRCr8
mRatBN7.2	2	152,127,171 - 152,888,587 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	152,126,953 - 152,888,585 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	159,254,429 - 160,014,724 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	157,304,939 - 158,065,238 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	151,937,697 - 152,698,002 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	172,312,290 - 173,087,236 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	172,312,298 - 172,459,165 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	192,261,956 - 192,275,730 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	191,602,249 - 191,796,738 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	157,848,639 - 158,631,796 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	158,406,527 - 158,581,774 (+)	NCBI
Celera	2	146,498,127 - 147,247,765 (+)	NCBI		Celera
Cytogenetic Map	2	q32	NCBI

SCHIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	159,273,244 - 159,897,359 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	159,273,244 - 159,897,629 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	158,991,033 - 159,615,148 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	160,474,238 - 161,097,833 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	160,474,245 - 161,097,841	NCBI
Celera	3	157,413,298 - 158,036,888 (+)	NCBI		Celera
Cytogenetic Map	3	q25.32-q25.33	NCBI
HuRef	3	156,387,582 - 157,011,650 (+)	NCBI		HuRef
CHM1_1	3	158,953,931 - 159,578,052 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	162,047,599 - 162,671,965 (+)	NCBI		T2T-CHM13v2.0

Schip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	67,972,135 - 68,533,815 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	67,972,135 - 68,533,814 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	68,064,802 - 68,626,482 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	68,064,802 - 68,626,481 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	67,696,154 - 68,430,404 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	68,660,436 - 68,714,362 (+)	NCBI		MGSCv36	mm8
Celera	3	68,016,690 - 68,758,776 (+)	NCBI		Celera
Cytogenetic Map	3	E1	NCBI
cM Map	3	31.44	NCBI

Schip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955448	9,980,467 - 10,504,308 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955448	10,364,261 - 10,502,799 (+)	NCBI	ChiLan1.0	ChiLan1.0

SCHIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	157,224,331 - 157,836,221 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	157,229,063 - 157,840,953 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	156,307,829 - 156,919,728 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	164,357,503 - 164,969,361 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	164,837,723 - 164,968,769 (+)	Ensembl	panpan1.1		panPan2

Variants

Variants in Schip1
4860 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	111
Count of miRNA genes:	95
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000057473
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	129164097	152195315	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	175950118	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	152413072	175950118	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	175950118	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	118111229	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	175950118	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	175950118	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	175950118	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	118189491	163189491	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147686913	168355276	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat

Markers in Region

D2Rat164

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,195,074 - 152,195,315 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	173,019,958 - 173,020,198	NCBI	Rnor6.0
Rnor_5.0	2	192,362,243 - 192,362,483	UniSTS	Rnor5.0
RGSC_v3.4	2	157,916,864 - 157,917,105	RGD	RGSC3.4
RGSC_v3.4	2	157,916,865 - 157,917,105	UniSTS	RGSC3.4
RGSC_v3.1	2	157,866,827 - 157,867,068	RGD
Celera	2	146,566,029 - 146,566,267	UniSTS
RH 3.4 Map	2	998.3	RGD
RH 3.4 Map	2	998.3	UniSTS
RH 2.0 Map	2	717.9	RGD
SHRSP x BN Map	2	63.9498	RGD
Cytogenetic Map	2	q31	UniSTS

D2Mco7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,538,025 - 152,538,167 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,671,254 - 172,671,395	NCBI	Rnor6.0
Rnor_5.0	2	192,008,113 - 192,008,254	UniSTS	Rnor5.0
RGSC_v3.4	2	158,273,500 - 158,273,642	RGD	RGSC3.4
RGSC_v3.4	2	158,273,501 - 158,273,642	UniSTS	RGSC3.4
RGSC_v3.1	2	158,223,463 - 158,223,605	RGD
Celera	2	146,902,236 - 146,902,377	UniSTS
Cytogenetic Map	2	q31	UniSTS

D2Mco8

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,413,072 - 152,413,311 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,795,683 - 172,795,921	NCBI	Rnor6.0
Rnor_5.0	2	192,132,537 - 192,132,775	UniSTS	Rnor5.0
RGSC_v3.4	2	158,146,823 - 158,147,062	RGD	RGSC3.4
RGSC_v3.4	2	158,146,824 - 158,147,062	UniSTS	RGSC3.4
RGSC_v3.1	2	158,096,786 - 158,097,025	RGD
Celera	2	146,777,810 - 146,778,054	UniSTS
Cytogenetic Map	2	q31	UniSTS

D2Mco14

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,537,946 - 152,538,164 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,671,257 - 172,671,474	NCBI	Rnor6.0
Rnor_5.0	2	192,008,116 - 192,008,333	UniSTS	Rnor5.0
RGSC_v3.4	2	158,273,421 - 158,273,639	RGD	RGSC3.4
RGSC_v3.4	2	158,273,422 - 158,273,639	UniSTS	RGSC3.4
RGSC_v3.1	2	158,223,384 - 158,223,602	RGD
Celera	2	146,902,157 - 146,902,374	UniSTS
Cytogenetic Map	2	q31	UniSTS

D2Got334

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,312,197 - 152,312,341 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,908,577 - 172,908,720	NCBI	Rnor6.0
Rnor_5.0	2	192,245,584 - 192,245,727	UniSTS	Rnor5.0
RGSC_v3.4	2	158,045,761 - 158,045,904	UniSTS	RGSC3.4
Celera	2	146,677,377 - 146,677,532	UniSTS
Cytogenetic Map	2	q31	UniSTS

D2Got379

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,127,600 - 152,127,792 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	173,086,615 - 173,086,806	NCBI	Rnor6.0
Rnor_5.0	2	192,428,843 - 192,429,034	UniSTS	Rnor5.0
RGSC_v3.4	2	157,849,069 - 157,849,260	UniSTS	RGSC3.4
Celera	2	146,498,557 - 146,498,748	UniSTS
Cytogenetic Map	2	q31	UniSTS

BF403845

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,296,390 - 152,296,551 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,924,301 - 172,924,461	NCBI	Rnor6.0
Rnor_5.0	2	192,261,308 - 192,261,468	UniSTS	Rnor5.0
RGSC_v3.4	2	158,029,956 - 158,030,116	UniSTS	RGSC3.4
Celera	2	146,661,571 - 146,661,731	UniSTS
RH 3.4 Map	2	999.1	UniSTS
Cytogenetic Map	2	q31	UniSTS

RH137633

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,500,287 - 152,500,434 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,708,352 - 172,708,498	NCBI	Rnor6.0
Rnor_5.0	2	192,045,402 - 192,045,548	UniSTS	Rnor5.0
RGSC_v3.4	2	158,236,307 - 158,236,453	UniSTS	RGSC3.4
Celera	2	146,865,002 - 146,865,148	UniSTS
Cytogenetic Map	2	q31	UniSTS

AI170339

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,744,073 - 152,744,169 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,465,806 - 172,465,901	NCBI	Rnor6.0
Rnor_5.0	2	191,803,368 - 191,803,463	UniSTS	Rnor5.0
RGSC_v3.4	2	158,481,573 - 158,481,668	UniSTS	RGSC3.4
Celera	2	147,107,387 - 147,107,482	UniSTS
RH 3.4 Map	2	1001.8	UniSTS
Cytogenetic Map	2	q31	UniSTS

G44760

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,775,630 - 152,775,876 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,434,032 - 172,434,277	NCBI	Rnor6.0
Rnor_5.0	2	191,771,360 - 191,771,605	UniSTS	Rnor5.0
RGSC_v3.4	2	158,513,404 - 158,513,649	UniSTS	RGSC3.4
Celera	2	147,138,867 - 147,139,112	UniSTS
Cytogenetic Map	2	q31	UniSTS

D17S1446E

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	152,832,101 - 152,832,510 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	172,367,777 - 172,368,185	NCBI	Rnor6.0
Rnor_5.0	2	191,716,355 - 191,716,763	UniSTS	Rnor5.0
Cytogenetic Map	2	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC108233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC169016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB726734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK366144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057473 ⟹ ENSRNOP00000054283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	152,126,953 - 152,888,584 (+)	Ensembl
Rnor_6.0 Ensembl	2	172,312,332 - 172,459,165 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085876 ⟹ ENSRNOP00000069226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	152,838,509 - 152,888,579 (+)	Ensembl
Rnor_6.0 Ensembl	2	172,312,298 - 172,361,779 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096555 ⟹ ENSRNOP00000088969

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	152,826,697 - 152,888,584 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110983 ⟹ ENSRNOP00000082059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	152,305,857 - 152,888,585 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115543 ⟹ ENSRNOP00000097397

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	152,305,226 - 152,888,584 (+)	Ensembl

RefSeq Acc Id:

NM_001100666 ⟹ NP_001094136

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	154,437,217 - 155,198,560 (+)	NCBI
mRatBN7.2	2	152,127,171 - 152,888,587 (+)	NCBI
Rnor_6.0	2	172,312,290 - 173,087,236 (-)	NCBI
Rnor_5.0	2	191,602,249 - 191,796,738 (-)	NCBI
Rnor_5.0	2	192,261,956 - 192,275,730 (-)	NCBI
RGSC_v3.4	2	157,848,639 - 158,631,796 (+)	RGD
Celera	2	146,498,127 - 147,247,765 (+)	RGD

Sequence:

show sequence

CCGAGGAACACCGTGCGGCAGCCTCTGATTCAGTCTCCTCTTACCTGCAGGTGCTCTAGAAACT
TCAAAATGCGACTGGAAGAACTAAAAAGACTACAGAATCCTTTAGAACAAGTTGATGATGGAAA
ATATTTGCTCGAGAATCACCAGCTGGCCACGGATATGGAGAATAACATTGAGAACTATCCCCTC
AGCCTACAGCCCTTGGAATCCAAGGTGAAAATCATTCAGCGAGCATGGCGAGAGTACTTGCAGA
GGCAGGACCCCCTGGAGAAGAGGAGCCCATCCCCACCTTCTGTCTCTTCAGACAAGCTGAGCAG
CTCTGTCAGCATGAACACCTTCTCCGACAGCAGCACACCCGATTACCGAGAGGATGGGATGGAT
CTAGGCAGTGACGCCGGCAGCAGCAGCAGCAGCAGCCGCGCCAGCTCACAGTCCAACTCCACCA
AAGTGACCCCTTGCTCCGAGTGCAAATCCTCATCGTCGCCGGGGGGCAGCCTGGACTTGGTGTC
TGCTCTGGAAGACTATGAAGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCT
CCGGAGGAGGACGGGGAGGAGGAGGAAGAGGAGGACGATCGAGGGTATCGGGATGACCGCTGCC
CGGCCCGGGAGCCGGGGGACGTAAGCGCCAGGATCGGCGGCAGCGGCAGCGGGAACAGGAGCGC
CGCCACCACCATGCCTTCCCCGATGCCTAACGGCAACCTCCACCCGCACGACCCCCAAGACCTC
AGGCACAATGGCAACCTGGTGATAGCCGGCCGGCCGAACGCCTCCCGGGTTCCCCGGCGACCCA
TCCAGAAGACCCAGCCTCCAGGAAACCGGCGCGGAGGCCGGAACCGGGCATCTGGGGGGCTCTG
CCTTCAGCCTCCGGACGGCGGGATGCGCGTCCCGGAAGAACCCCCTGCGCCCCCAATGGACTGG
GAGGCGTTGGAAAAGCATCTGGCTGGGCTGCAGTTCCGGGAGCAGGAGGTGCGAAATCAGGGTC
AGGCGAGGACCAACTCCACCTCTGCACAGAAGAATGAGAGAGAGTCTATCAGACAGAAGTTGGC
ACTCGGAAGCTTCTTTGACGATGGCCCCGGAATCTATACCAGCTGCAGCAAAAGCGGGAAGCCA
AGCCTTTCCTCGAGACTACAAAGTGGGATGAACCTCCAGATATGCTTTGTCAACGACAGCGGCA
GTGACAAGGACAGCGATGCCGACGACAGTAAGACTGAGACCAGCCTGGACACGCCCTTGTCCCC
CATGAGCAAGCAGAGTTCTTCCTACTCTGATAGAGACACCACCGAGGAGGAATCTGAATCCCTG
GATGACATGGACTTCCTTACAAGGCAAAAGAAGCTACAAGCTGAAGCCAAAATGGCCCTGGCCA
TGGCCAAACCAATGGCCAAAATGCAAGTAGAAGTGGAAAAACAGAACAGGAAAAAGTCTCCCGT
CGCTGACCTTCTGCCTCACATGCCTCACATAAGCGAATGCTTGATGAAAAGAAGCTTAAAGCCC
ACCGACCTGAGAGACATGACTATCGGGCAGCTACAAGTGATCGTCAATGACCTTCACTCCCAGA
TTGAGAGTTTGAATGAAGAGTTGGTCCAGCTGCTCCTCATTCGAGATGAGCTGCACACAGAACA
AGACGCCATGCTGGTGGACATAGAAGACTTGACTAGACACGCTGAGAGTCAGCAGAAGCACATG
GCTGAGAAAATGCCCTCGAAGTGAAAGAGAGCCATCCACCAGAGGACAAGCTAGAATTTATTTT
GCTTCTGTGGTCGTAAAAAATGCTGTTGCTAAAGGTGGCTCCGAAAGAGACATCGGTGTTAGTC
ATTGGTAATGTCCACGCTTCCTGTCCCGTGACTGGCCTTCGCTTCTTAATTTATTTTAATTTAA
TTCTTTTTTTTTTTTTACTCTCTCCACTTACTATCAGGCCTTTTAATAAAATATCGTTACGAGA
ACTGTACAGTACTTACACCACCAACAACCGTGGATAAGCAGAGGGTAGTTTTAACTTTATTTTT
ATTTGTTTAGCTAAACTTTAAGTTGGAGCAGTATTTTACCATTGACCATTTCATTCTTCACTGT
AGCTTTGAAGAGGAACTGTAAATGACGGTGCTAACAAGTCAAAATACATGCCTGCCTCGTAGTG
AAGTCGTAGCTCTCCATACTACGTATATTTTAATCAGTTTTCAACATTTTGTGAATGTTGACTA
CCTGAGGTTTATTCTTAGATGTGCTATTAACATTCTGTCGGATCCACATGGTTCCTTGAAAGTT
TTATGTATAAATATGTAAAATAAAAATTAAAACTTTGTTTCATATGATAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_008761080 ⟹ XP_008759302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,060,423 - 155,198,558 (+)	NCBI
mRatBN7.2	2	152,750,448 - 152,888,587 (+)	NCBI
Rnor_6.0	2	172,312,290 - 172,459,534 (-)	NCBI

Sequence:

show sequence

GGAATCAGAATTCAGTGGGAAAGTGTTTGGGAGAATCCTTGGGGTGGAGTGCCAGGGCGCGCCT
GGTGTAAAATGGTTAACACAAAGTCCGCGCGCGCCCCTGGGCTATGAGGGTGAAAAGTGCGCGC
CCGTGGCTGCGCACCCCTTTGCTAATTTGCGGGATTACCGAGAGGATGGGATGGATCTAGGCAG
TGACGCCGGCAGCAGCAGCAGCAGCAGCCGCGCCAGCTCACAGTCCAACTCCACCAAAGTGACC
CCTTGCTCCGAGTGCAAATCCTCATCGTCGCCGGGGGGCAGCCTGGACTTGGTGTCTGCTCTGG
AAGACTATGAAGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCTCCGGAGGA
GGACGGGGAGGAGGAGGAAGAGGAGGACGATCGAGGGTATCGGGATGACCGCTGCCCGGCCCGG
GAGCCGGGGGACGTAAGCGCCAGGATCGGCGGCAGCGGCAGCGGGAACAGGAGCGCCGCCACCA
CCATGCCTTCCCCGATGCCTAACGGCAACCTCCACCCGCACGACCCCCAAGACCTCAGGCACAA
TGGCAACCTGGTGATAGCCGGCCGGCCGAACGCCTCCCGGGTTCCCCGGCGACCCATCCAGAAG
ACCCAGCCTCCAGGAAACCGGCGCGGAGGCCGGAACCGGGCATCTGGGGGGCTCTGCCTTCAGC
CTCCGGACGGCGGGATGCGCGTCCCGGAAGAACCCCCTGCGCCCCCAATGGACTGGGAGGCGTT
GGAAAAGCATCTGGCTGGGCTGCAGTTCCGGGAGCAGGAGGTGCGAAATCAGGGTCAGGCGAGG
ACCAACTCCACCTCTGCACAGAAGAATGAGAGAGAGTCTATCAGACAGAAGTTGGCACTCGGAA
GCTTCTTTGACGATGGCCCCGGAATCTATACCAGCTGCAGCAAAAGCGGGAAGCCAAGCCTTTC
CTCGAGACTACAAAGTGGGATGAACCTCCAGATATGCTTTGTCAACGACAGCGGCAGTGACAAG
GACAGCGATGCCGACGACAGTAAGACTGAGACCAGCCTGGACACGCCCTTGTCCCCCATGAGCA
AGCAGAGTTCTTCCTACTCTGATAGAGACACCACCGAGGAGGAATCTGAATCCCTGGATGACAT
GGACTTCCTTACAAGGCAAAAGAAGCTACAAGCTGAAGCCAAAATGGCCCTGGCCATGGCCAAA
CCAATGGCCAAAATGCAAGTAGAAGTGGAAAAACAGAACAGGAAAAAGTCTCCCGTCGCTGACC
TTCTGCCTCACATGCCTCACATAAGCGAATGCTTGATGAAAAGAAGCTTAAAGCCCACCGACCT
GAGAGACATGACTATCGGGCAGCTACAAGTGATCGTCAATGACCTTCACTCCCAGATTGAGAGT
TTGAATGAAGAGTTGGTCCAGCTGCTCCTCATTCGAGATGAGCTGCACACAGAACAAGACGCCA
TGCTGGTGGACATAGAAGACTTGACTAGACACGCTGAGAGTCAGCAGAAGCACATGGCTGAGAA
AATGCCCTCGAAGTGAAAGAGAGCCATCCACCAGAGGACAAGCTAGAATTTATTTTGCTTCTGT
GGTCGTAAAAAATGCTGTTGCTAAAGGTGGCTCCGAAAGAGACATCGGTGTTAGTCATTGGTAA
TGTCCACGCTTCCTGTCCCGTGACTGGCCTTCGCTTCTTAATTTATTTTAATTTAATTCTTTTT
TTTTTTTTACTCTCTCCACTTACTATCAGGCCTTTTAATAAAATATCGTTACGAGAACTGTACA
GTACTTACACCACCAACAACCGTGGATAAGCAGAGGGTAGTTTTAACTTTATTTTTATTTGTTT
AGCTAAACTTTAAGTTGGAGCAGTATTTTACCATTGACCATTTCATTCTTCACTGTAGCTTTGA
AGAGGAACTGTAAATGACGGTGCTAACAAGTCAAAATACATGCCTGCCTCGTAGTGAAGTCGTA
GCTCTCCATACTACGTATATTTTAATCAGTTTTCAACATTTTGTGAATGTTGACTACCTGAGGT
TTATTCTTAGATGTGCTATTAACATTCTGTCGGATCCACATGGTTCCTTGAAAGTTTTATGTAT
AAATATGTAAAATAAAAATTAAAACTTTGTTTCATATGATA

hide sequence

RefSeq Acc Id:

XM_008761082 ⟹ XP_008759304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,142,012 - 155,198,558 (+)	NCBI
mRatBN7.2	2	152,838,285 - 152,888,587 (+)	NCBI
Rnor_6.0	2	172,312,290 - 172,364,520 (-)	NCBI

Sequence:

show sequence

AATGCACTATTGTTTGTAAAACTTGTGTGTGTAATTAATGATAAAAGTGTAGTTTTCCTAATTC
TAACTCTGTACTGAAGGCAACCCAGTTATAATGAAGGTAAATAGGTTTTGTCAGAATTTTACGT
GTCTTGATGCCTTACGATTTCTAAATTTTTACTCCTGCTCGTTATCAGTTGTAGGTTGCTTAGT
GACTTACGGTAGAGACCCAAATGAGTGACTAAAATTGACTGTGCTGTAGAACAAACAAGGAGGG
AGACGTGAATCAGCTGCAGTAGTAACTGCCTCTCCTCTGAGGAAGCCAGTTCTCTAGGCTCCAC
CCTGTAGGCTGTGTATAGTTCTTCTGAGGAAGCTATCCTAACAGCTCAGTGAAACTGTCCTACA
GGCAGGTAGCCTTCCTCCCTCCTGTGGCTAGCCAGCCTCATGGGAGCCCCACAAACAGTGTGGG
TTGAAAGTCAGTAATGTTAGCTCTTGTTGCTTGTCACTGTGGACGGAGCATCTGGAGGAAGGTT
TCCAGCCACACAGGTACTCCTTACTGTTCGATATGCAGAAACTCCTCAGTGAGGGCTCACCATA
GGCAAAGCAACTTTTCAGATGCTGTGGGCCGAGTAAAATGACTAAACACAAATCCTGTTCCCCG
AGGGGGAAAAATGCCTAAAGCAGTAATGTCTGTCAGAAAGAAGCTACTTGGTTCCTGAGAACTC
CACGGTAAAGCAGAGGAGAAAATTCGCCAGACCGTGTGCTGGGCAGCTTTCCTTCCAGTTCCTA
AGGCGCCAGCAGCAGGAGGGTTGCGGCAGTGCGTTCCGGGTGTGCCAGCTGTATGATTTACACC
CAGCATATGACTGGGGAGTGCTGCTGGATTTCTCTTCAACACATCCTAATTAAAAAAAGAAAAA
GGCACCACCTTTATCATGGCCGTGTATTGCTCTGGGGGTCAGCCAGTATGAGGCTCTAGCACGC
CCATTTACAGTGTGGCCACCAAGGCAGAGGACCTAGATTCAAATTCCTGCCTGACTGGCAGTTT
AGGTAGGTAGACCCTTACTTAACATCCCTAGGTGCCCCTCCCACCTCGGCTCTAAAATGCAGCT
GGCAATGGTACATATGCCATAGGGTTATTGGGAGAGGAAACACAAGGAAAGGAAACACACGTAA
GGTGCCTGGCCTCAGTAAAGCACACATGTTTTACATGGTTGCATATCGTGTAAGATTTGTGCTT
TCGTCCATCCCTTCTGTTTGGTTAGGATACAGAGGACCATTCAAGGCAGGAGCATCGTTTTAAC
TGACTGCTTTGCACTGCTGTCACAGCCCTAGCCAGCACTCAGTAGGCCCCATTGCCACACCATC
CAGACAAACACTCCAGGACACTGCCATCTGGAATGAGAGTCCAGGGGTCTGGACCAGAGTAAGA
CAGAGCCTTGCAAATGTATCCCACAAGATGAAACTTGTCAGTGTGATACCTTACAAAAGGGCTA
TTCATCCCCTTGGGAGCGGAGAGGACTGGCTGGGGGGGTGGTGAGGGAATGGAATAAAAGGATT
TAGATTTGGATCTGGGCTGTGAGAAGAAAATATTTGCCTGATAGAAGCAGGCCTACCATAAAGC
CCATTGAGCTGTGTTTATATCACAAGTCTAACACAAATTGAATTTAAAAATATTTACAGAGGTA
AACCGCTAAAGTTGAGCCTGCGAGCAGAGGTTGAGATGCGGGACAAGGTTCTATTGGATGGCAT
TTTCCTTCAGACCTGTTCGTAACAATGTTGCGGTTGCTCAGGAATGTGTACTGGAGAATTGATT
GACTAGTGCCTTTGCAATTTTCCGTGTGAGCATTTCAGAAGGTAAGGCCTGTTGCTAAGTGGAA
GCTTGGCCTTTGAGTTCTTCTGTGGCTGGTTTCCTCTGCAAACCATTACTGAAAAGTCATAGCA
TTTTTGTTAGTTTGTTTATGGGAGTATTAATTTGATGCGCATGAGTATGCTTGAGTGTGCCTGT
GAACTTCTGTTTGTCTGCTTCTTTGAGCCAAACATCCTCCAGCTGTGGACCTTTCCCTGGCTTC
CTGTAAAACCCAAAAACAAACCCAGAAGCCATGGGGAAAGCTTAAAGAGAGCGAGAAAAAAGAA
AGCGTGCTTCTGTAGAAAAGCCCGCCACTGGCTGAATCTTAAAAGAAAGTTGATGGATCTCTTT
CTCTTGCCCATGTTAAAAGGACAAAGCCGTGCTCCTGGGGCAGAGAGGGGTTTCTGTGGGTTGG
AATCAGTCTCAGTCCTGGGCTTAGTGCTCATTCCAGACGATGAAACTTCTACATCTCATAAACG
ATTTGGAAAAAAAGAAATGTAGTGGTCAGTCCCCGTTGGTCATGGGGGAAAAAATGGGAAACAT
CTGTCTTACAGGTCACCTTAAATGATAGTTTTTGTTCCATGTGGGGCGCCCGACTCAGCTCACA
GTGAGATCTCTCGGGCTGCAAGTTTTTGTGTCTATTTTTATCCCGCAGTCTACTGGCTTCAGAG
TGCCTCACCAAACTCCAGTTCACGCTGGGCCCTGAACTGGGGTCAGGTCAGCTGGCTGAAGCCT
CCTGTCCCTCCTTTCCCTTGTTGGGAGCAGGAAAGGTGCTGTAGAGGAGTCTGGGCCAGATCAT
TCAGGGAAGGTGACAGCAGATGGTAGGCAGGCCGGACTCTCAACAAGCCAGTCGTCAGGAACGG
AGTGCACCTTACAGCAGGCAGCTGCCCGGTGCCCGGGAGAAAGAAGCCAGGCAGGCCGGGCGGG
GCAGTGTCTGAGGCAGAAAGGGGCAAGGACACCACAGCCAAGCACAGGCTCTTCATGCCAGCAT
GAGTGGTCACCAAGGTACTGGGCAGTTGGCACTTCATCCTGTCAGGATTCATGGGAGATTATTT
CTTAAGTGAAATTCTAAAGAGTTAAAGGATGAATTTGGACCGTGATGGAATGGACGATGACATC
ATCAGTCGAGAATCTCCATTGGATTTGGAGGGGAATTATAAAAAGGCACAGAAGAATGAGAGAG
AGTCTATCAGACAGAAGTTGGCACTCGGAAGCTTCTTTGACGATGGCCCCGGAATCTATACCAG
CTGCAGCAAAAGCGGGAAGCCAAGCCTTTCCTCGAGACTACAAAGTGGGATGAACCTCCAGATA
TGCTTTGTCAACGACAGCGGCAGTGACAAGGACAGCGATGCCGACGACAGTAAGACTGAGACCA
GCCTGGACACGCCCTTGTCCCCCATGAGCAAGCAGAGTTCTTCCTACTCTGATAGAGACACCAC
CGAGGAGGAATCTGAATCCCTGGATGACATGGACTTCCTTACAAGGCAAAAGAAGCTACAAGCT
GAAGCCAAAATGGCCCTGGCCATGGCCAAACCAATGGCCAAAATGCAAGTAGAAGTGGAAAAAC
AGAACAGGAAAAAGTCTCCCGTCGCTGACCTTCTGCCTCACATGCCTCACATAAGCGAATGCTT
GATGAAAAGAAGCTTAAAGCCCACCGACCTGAGAGACATGACTATCGGGCAGCTACAAGTGATC
GTCAATGACCTTCACTCCCAGATTGAGAGTTTGAATGAAGAGTTGGTCCAGCTGCTCCTCATTC
GAGATGAGCTGCACACAGAACAAGACGCCATGCTGGTGGACATAGAAGACTTGACTAGACACGC
TGAGAGTCAGCAGAAGCACATGGCTGAGAAAATGCCCTCGAAGTGAAAGAGAGCCATCCACCAG
AGGACAAGCTAGAATTTATTTTGCTTCTGTGGTCGTAAAAAATGCTGTTGCTAAAGGTGGCTCC
GAAAGAGACATCGGTGTTAGTCATTGGTAATGTCCACGCTTCCTGTCCCGTGACTGGCCTTCGC
TTCTTAATTTATTTTAATTTAATTCTTTTTTTTTTTTTACTCTCTCCACTTACTATCAGGCCTT
TTAATAAAATATCGTTACGAGAACTGTACAGTACTTACACCACCAACAACCGTGGATAAGCAGA
GGGTAGTTTTAACTTTATTTTTATTTGTTTAGCTAAACTTTAAGTTGGAGCAGTATTTTACCAT
TGACCATTTCATTCTTCACTGTAGCTTTGAAGAGGAACTGTAAATGACGGTGCTAACAAGTCAA
AATACATGCCTGCCTCGTAGTGAAGTCGTAGCTCTCCATACTACGTATATTTTAATCAGTTTTC
AACATTTTGTGAATGTTGACTACCTGAGGTTTATTCTTAGATGTGCTATTAACATTCTGTCGGA
TCCACATGGTTCCTTGAAAGTTTTATGTATAAATATGTAAAATAAAAATTAAAACTTTGTTTCA
TATGATA

hide sequence

RefSeq Acc Id:

XM_008761083 ⟹ XP_008759305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,132,411 - 155,198,558 (+)	NCBI
mRatBN7.2	2	152,827,172 - 152,888,587 (+)	NCBI
Rnor_6.0	2	172,312,290 - 172,373,132 (-)	NCBI

Sequence:

show sequence

CTCGGCTCAGCAGCCTGCCTCCCGGTTCCGGAGGAGCAGAGCAGCTCGGAGGCTTCAGAGCAAG
CTCTGTGGCTGCGCGCTTCCCAGCACAGGCAGTGCCACTGCGCAGGTTGCTCAGCGGAACAGCA
TCCATTTTAATCTGCGGGGAGCCCCTGCCTAACCAGGGCGTTCTCCCGCGCCTGTGGATGCTCA
GCGCTTCCCCTGCGCAGCCTCGCCCAACAGTCCAGCTTTGGGGTCTGCGTCCTAGGATGTTCTG
AGATGGTACATCAGGAGAACTGCTCGTACCAGGCACAGAAGAATGAGAGAGAGTCTATCAGACA
GAAGTTGGCACTCGGAAGCTTCTTTGACGATGGCCCCGGAATCTATACCAGCTGCAGCAAAAGC
GGGAAGCCAAGCCTTTCCTCGAGACTACAAAGTGGGATGAACCTCCAGATATGCTTTGTCAACG
ACAGCGGCAGTGACAAGGACAGCGATGCCGACGACAGTAAGACTGAGACCAGCCTGGACACGCC
CTTGTCCCCCATGAGCAAGCAGAGTTCTTCCTACTCTGATAGAGACACCACCGAGGAGGAATCT
GAATCCCTGGATGACATGGACTTCCTTACAAGGCAAAAGAAGCTACAAGCTGAAGCCAAAATGG
CCCTGGCCATGGCCAAACCAATGGCCAAAATGCAAGTAGAAGTGGAAAAACAGAACAGGAAAAA
GTCTCCCGTCGCTGACCTTCTGCCTCACATGCCTCACATAAGCGAATGCTTGATGAAAAGAAGC
TTAAAGCCCACCGACCTGAGAGACATGACTATCGGGCAGCTACAAGTGATCGTCAATGACCTTC
ACTCCCAGATTGAGAGTTTGAATGAAGAGTTGGTCCAGCTGCTCCTCATTCGAGATGAGCTGCA
CACAGAACAAGACGCCATGCTGGTGGACATAGAAGACTTGACTAGACACGCTGAGAGTCAGCAG
AAGCACATGGCTGAGAAAATGCCCTCGAAGTGAAAGAGAGCCATCCACCAGAGGACAAGCTAGA
ATTTATTTTGCTTCTGTGGTCGTAAAAAATGCTGTTGCTAAAGGTGGCTCCGAAAGAGACATCG
GTGTTAGTCATTGGTAATGTCCACGCTTCCTGTCCCGTGACTGGCCTTCGCTTCTTAATTTATT
TTAATTTAATTCTTTTTTTTTTTTTACTCTCTCCACTTACTATCAGGCCTTTTAATAAAATATC
GTTACGAGAACTGTACAGTACTTACACCACCAACAACCGTGGATAAGCAGAGGGTAGTTTTAAC
TTTATTTTTATTTGTTTAGCTAAACTTTAAGTTGGAGCAGTATTTTACCATTGACCATTTCATT
CTTCACTGTAGCTTTGAAGAGGAACTGTAAATGACGGTGCTAACAAGTCAAAATACATGCCTGC
CTCGTAGTGAAGTCGTAGCTCTCCATACTACGTATATTTTAATCAGTTTTCAACATTTTGTGAA
TGTTGACTACCTGAGGTTTATTCTTAGATGTGCTATTAACATTCTGTCGGATCCACATGGTTCC
TTGAAAGTTTTATGTATAAATATGTAAAATAAAAATTAAAACTTTGTTTCATATGATA

hide sequence

RefSeq Acc Id:

XM_039102019 ⟹ XP_038957947

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,059,513 - 155,198,558 (+)	NCBI
mRatBN7.2	2	152,749,540 - 152,888,587 (+)	NCBI

RefSeq Acc Id:

XM_063281588 ⟹ XP_063137658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	154,615,306 - 155,198,558 (+)	NCBI

RefSeq Acc Id:

XM_063281589 ⟹ XP_063137659

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,034,517 - 155,198,558 (+)	NCBI

RefSeq Acc Id:

XM_063281590 ⟹ XP_063137660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,160,567 - 155,198,558 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094136	(Get FASTA)	NCBI Sequence Viewer
	XP_008759302	(Get FASTA)	NCBI Sequence Viewer
	XP_008759304	(Get FASTA)	NCBI Sequence Viewer
	XP_008759305	(Get FASTA)	NCBI Sequence Viewer
	XP_038957947	(Get FASTA)	NCBI Sequence Viewer
	XP_063137658	(Get FASTA)	NCBI Sequence Viewer
	XP_063137659	(Get FASTA)	NCBI Sequence Viewer
	XP_063137660	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92618	(Get FASTA)	NCBI Sequence Viewer
	AAI69016	(Get FASTA)	NCBI Sequence Viewer
	EDM00917	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054283.5
	ENSRNOP00000069226.1
	ENSRNOP00000082059.1
	ENSRNOP00000088969.1
	ENSRNOP00000097397.1

RefSeq Acc Id:

NP_001094136 ⟸ NM_001100666

- UniProtKB:

F1M6Q1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRLEELKRLQNPLEQVDDGKYLLENHQLATDMENNIENYPLSLQPLESKVKIIQRAWREYLQRQ
DPLEKRSPSPPSVSSDKLSSSVSMNTFSDSSTPDYREDGMDLGSDAGSSSSSSRASSQSNSTKV
TPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEEEEEEDDRGYRDDRCPA
REPGDVSARIGGSGSGNRSAATTMPSPMPNGNLHPHDPQDLRHNGNLVIAGRPNASRVPRRPIQ
KTQPPGNRRGGRNRASGGLCLQPPDGGMRVPEEPPAPPMDWEALEKHLAGLQFREQEVRNQGQA
RTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSD
KDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMA
KPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLHSQIE
SLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHMAEKMPSK

hide sequence

RefSeq Acc Id:

XP_008759302 ⟸ XM_008761080

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDE
WAPEEDGEEEEEEDDRGYRDDRCPAREPGDVSARIGGSGSGNRSAATTMPSPMPNGNLHPHDPQ
DLRHNGNLVIAGRPNASRVPRRPIQKTQPPGNRRGGRNRASGGLCLQPPDGGMRVPEEPPAPPM
DWEALEKHLAGLQFREQEVRNQGQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSG
KPSLSSRLQSGMNLQICFVNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESE
SLDDMDFLTRQKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSL
KPTDLRDMTIGQLQVIVNDLHSQIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQK
HMAEKMPSK

hide sequence

RefSeq Acc Id:	XP_008759305 ⟸ XM_008761083
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6GHN3 (UniProtKB/TrEMBL), A6J5M2 (UniProtKB/TrEMBL), Q562A8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVHQENCSYQAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVND SGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMA LAMAKPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLH SQIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHMAEKMPSK hide sequence

RefSeq Acc Id:	XP_008759304 ⟸ XM_008761082
- Peptide Label:	isoform X4
- UniProtKB:	B5DFD3 (UniProtKB/TrEMBL), Q562A8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNLDRDGMDDDIISRESPLDLEGNYKKAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSL SSRLQSGMNLQICFVNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDD MDFLTRQKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTD LRDMTIGQLQVIVNDLHSQIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHMAE KMPSK hide sequence

Ensembl Acc Id:

ENSRNOP00000054283 ⟸ ENSRNOT00000057473

Ensembl Acc Id:

ENSRNOP00000069226 ⟸ ENSRNOT00000085876

RefSeq Acc Id:	XP_038957947 ⟸ XM_039102019
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000088969 ⟸ ENSRNOT00000096555

Ensembl Acc Id:

ENSRNOP00000082059 ⟸ ENSRNOT00000110983

Ensembl Acc Id:

ENSRNOP00000097397 ⟸ ENSRNOT00000115543

RefSeq Acc Id:	XP_063137658 ⟸ XM_063281588
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AUB8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137659 ⟸ XM_063281589
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063137660 ⟸ XM_063281590
- Peptide Label:	isoform X6

Protein Domains

Fusion protein IQCJ-SCHIP1 N-terminal Schwannomin interacting protein 1 C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M6Q1-F1-model_v2	AlphaFold	F1M6Q1	1-457	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691382

Promoter ID:

EPDNEW_R1903

Type:

single initiation site

Name:

Schip1_1

Description:

schwannomin interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	172,361,725 - 172,361,785	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309962	AgrOrtholog
BioCyc Gene	G2FUF-52858	BioCyc
Ensembl Genes	ENSRNOG00000009276	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000057473.5	UniProtKB/TrEMBL
	ENSRNOT00000085876.2	UniProtKB/TrEMBL
	ENSRNOT00000096555.1	UniProtKB/TrEMBL
	ENSRNOT00000110983.1	UniProtKB/TrEMBL
	ENSRNOT00000115543.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7312620	IMAGE-MGC_LOAD
InterPro	IQCJ-SCHIP1_N	UniProtKB/TrEMBL
	SCHIP_1	UniProtKB/TrEMBL
	SCHIP_1	UniProtKB/TrEMBL
KEGG Report	rno:295105	UniProtKB/TrEMBL
MGC_CLONE	MGC:109287	IMAGE-MGC_LOAD
NCBI Gene	295105	ENTREZGENE
PANTHER	IQCJ-SCHIP1 READTHROUGH TRANSCRIPT PROTEIN-RELATED	UniProtKB/TrEMBL
	PTHR13103	UniProtKB/TrEMBL
Pfam	IQCJ-SCHIP1	UniProtKB/TrEMBL
	SCHIP-1	UniProtKB/TrEMBL
PhenoGen	Schip1	PhenoGen
RatGTEx	ENSRNOG00000009276	RatGTEx
UniProt	A0A8I6AUB8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G6X9_RAT	UniProtKB/TrEMBL
	A0A8I6GHN3	ENTREZGENE, UniProtKB/TrEMBL
	A6J5M2	ENTREZGENE, UniProtKB/TrEMBL
	B5DFD3	ENTREZGENE, UniProtKB/TrEMBL
	F1M6Q1	ENTREZGENE, UniProtKB/TrEMBL
	Q562A8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Schip1	schwannomin interacting protein 1	Schip1_predicted	schwannomin interacting protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Schip1_predicted	schwannomin interacting protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar