Schip1 (schwannomin interacting protein 1) - Rat Genome Database

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Gene: Schip1 (schwannomin interacting protein 1) Rattus norvegicus
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Symbol: Schip1
Name: schwannomin interacting protein 1
RGD ID: 1309962
Description: Predicted to enable identical protein binding activity. Predicted to be involved in positive regulation of hippo signaling. Predicted to act upstream of or within several processes, including face morphogenesis; fibroblast migration; and luteinization. Predicted to be located in cytosol and nuclear body. Predicted to be active in cell junction and plasma membrane. Orthologous to human IQCJ-SCHIP1 (IQCJ-SCHIP1 readthrough) and SCHIP1 (schwannomin interacting protein 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; amphetamine; beta-naphthoflavone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC295105
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22152,127,171 - 152,888,587 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2152,126,953 - 152,888,585 (+)Ensembl
Rnor_6.02172,312,290 - 173,087,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2172,312,298 - 172,459,165 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02192,261,956 - 192,275,730 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02191,602,249 - 191,796,738 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42157,848,639 - 158,631,796 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12158,406,527 - 158,581,774 (+)NCBI
Celera2146,498,127 - 147,247,765 (+)NCBICelera
Cytogenetic Map2q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell junction  (IBA,ISO)
cytosol  (ISO)
nuclear body  (ISO)
nucleoplasm  (ISO)
plasma membrane  (IBA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:10669747   PMID:12477932   PMID:17143286   PMID:19056881   PMID:20195357   PMID:25950943  


Genomics

Comparative Map Data
Schip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22152,127,171 - 152,888,587 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2152,126,953 - 152,888,585 (+)Ensembl
Rnor_6.02172,312,290 - 173,087,236 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2172,312,298 - 172,459,165 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02192,261,956 - 192,275,730 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02191,602,249 - 191,796,738 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42157,848,639 - 158,631,796 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12158,406,527 - 158,581,774 (+)NCBI
Celera2146,498,127 - 147,247,765 (+)NCBICelera
Cytogenetic Map2q32NCBI
SCHIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383159,273,244 - 159,897,359 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3158,962,235 - 159,897,629 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl3159,839,861 - 159,897,360 (+)EnsemblGRCh38hg38GRCh38
GRCh373158,991,033 - 159,615,148 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363160,474,238 - 161,097,833 (+)NCBINCBI36hg18NCBI36
Build 343160,474,245 - 161,097,841NCBI
Celera3157,413,298 - 158,036,888 (+)NCBI
Cytogenetic Map3q25.32-q25.33NCBI
HuRef3156,387,582 - 157,011,650 (+)NCBIHuRef
CHM1_13158,953,931 - 159,578,052 (+)NCBICHM1_1
T2T-CHM13v2.03162,047,599 - 162,671,965 (+)NCBI
Schip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39367,972,135 - 68,533,815 (+)NCBIGRCm39mm39
GRCm39 Ensembl367,972,135 - 68,533,814 (+)Ensembl
GRCm38368,064,802 - 68,626,482 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl368,064,802 - 68,626,481 (+)EnsemblGRCm38mm10GRCm38
MGSCv37367,696,154 - 68,430,404 (+)NCBIGRCm37mm9NCBIm37
MGSCv36368,660,436 - 68,714,362 (+)NCBImm8
Celera368,016,690 - 68,758,776 (+)NCBICelera
Cytogenetic Map3E1NCBI
Schip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544810,364,261 - 10,502,799 (+)NCBIChiLan1.0ChiLan1.0
SCHIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13164,357,503 - 164,969,361 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3164,837,723 - 164,968,769 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03156,307,829 - 156,919,728 (+)NCBIMhudiblu_PPA_v0panPan3

Position Markers
D2Rat164  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,195,074 - 152,195,315 (-)MAPPERmRatBN7.2
Rnor_6.02173,019,958 - 173,020,198NCBIRnor6.0
Rnor_5.02192,362,243 - 192,362,483UniSTSRnor5.0
RGSC_v3.42157,916,864 - 157,917,105RGDRGSC3.4
RGSC_v3.42157,916,865 - 157,917,105UniSTSRGSC3.4
RGSC_v3.12157,866,827 - 157,867,068RGD
Celera2146,566,029 - 146,566,267UniSTS
RH 3.4 Map2998.3RGD
RH 3.4 Map2998.3UniSTS
RH 2.0 Map2717.9RGD
SHRSP x BN Map263.9498RGD
Cytogenetic Map2q31UniSTS
D2Mco7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,538,025 - 152,538,167 (-)MAPPERmRatBN7.2
Rnor_6.02172,671,254 - 172,671,395NCBIRnor6.0
Rnor_5.02192,008,113 - 192,008,254UniSTSRnor5.0
RGSC_v3.42158,273,500 - 158,273,642RGDRGSC3.4
RGSC_v3.42158,273,501 - 158,273,642UniSTSRGSC3.4
RGSC_v3.12158,223,463 - 158,223,605RGD
Celera2146,902,236 - 146,902,377UniSTS
Cytogenetic Map2q31UniSTS
D2Mco8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,413,072 - 152,413,311 (-)MAPPERmRatBN7.2
Rnor_6.02172,795,683 - 172,795,921NCBIRnor6.0
Rnor_5.02192,132,537 - 192,132,775UniSTSRnor5.0
RGSC_v3.42158,146,823 - 158,147,062RGDRGSC3.4
RGSC_v3.42158,146,824 - 158,147,062UniSTSRGSC3.4
RGSC_v3.12158,096,786 - 158,097,025RGD
Celera2146,777,810 - 146,778,054UniSTS
Cytogenetic Map2q31UniSTS
D2Mco14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,537,946 - 152,538,164 (-)MAPPERmRatBN7.2
Rnor_6.02172,671,257 - 172,671,474NCBIRnor6.0
Rnor_5.02192,008,116 - 192,008,333UniSTSRnor5.0
RGSC_v3.42158,273,421 - 158,273,639RGDRGSC3.4
RGSC_v3.42158,273,422 - 158,273,639UniSTSRGSC3.4
RGSC_v3.12158,223,384 - 158,223,602RGD
Celera2146,902,157 - 146,902,374UniSTS
Cytogenetic Map2q31UniSTS
D2Got334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,312,197 - 152,312,341 (-)MAPPERmRatBN7.2
Rnor_6.02172,908,577 - 172,908,720NCBIRnor6.0
Rnor_5.02192,245,584 - 192,245,727UniSTSRnor5.0
RGSC_v3.42158,045,761 - 158,045,904UniSTSRGSC3.4
Celera2146,677,377 - 146,677,532UniSTS
Cytogenetic Map2q31UniSTS
D2Got379  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,127,600 - 152,127,792 (-)MAPPERmRatBN7.2
Rnor_6.02173,086,615 - 173,086,806NCBIRnor6.0
Rnor_5.02192,428,843 - 192,429,034UniSTSRnor5.0
RGSC_v3.42157,849,069 - 157,849,260UniSTSRGSC3.4
Celera2146,498,557 - 146,498,748UniSTS
Cytogenetic Map2q31UniSTS
BF403845  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,296,390 - 152,296,551 (-)MAPPERmRatBN7.2
Rnor_6.02172,924,301 - 172,924,461NCBIRnor6.0
Rnor_5.02192,261,308 - 192,261,468UniSTSRnor5.0
RGSC_v3.42158,029,956 - 158,030,116UniSTSRGSC3.4
Celera2146,661,571 - 146,661,731UniSTS
RH 3.4 Map2999.1UniSTS
Cytogenetic Map2q31UniSTS
RH137633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,500,287 - 152,500,434 (-)MAPPERmRatBN7.2
Rnor_6.02172,708,352 - 172,708,498NCBIRnor6.0
Rnor_5.02192,045,402 - 192,045,548UniSTSRnor5.0
RGSC_v3.42158,236,307 - 158,236,453UniSTSRGSC3.4
Celera2146,865,002 - 146,865,148UniSTS
Cytogenetic Map2q31UniSTS
AI170339  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,744,073 - 152,744,169 (-)MAPPERmRatBN7.2
Rnor_6.02172,465,806 - 172,465,901NCBIRnor6.0
Rnor_5.02191,803,368 - 191,803,463UniSTSRnor5.0
RGSC_v3.42158,481,573 - 158,481,668UniSTSRGSC3.4
Celera2147,107,387 - 147,107,482UniSTS
RH 3.4 Map21001.8UniSTS
Cytogenetic Map2q31UniSTS
G44760  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,775,630 - 152,775,876 (-)MAPPERmRatBN7.2
Rnor_6.02172,434,032 - 172,434,277NCBIRnor6.0
Rnor_5.02191,771,360 - 191,771,605UniSTSRnor5.0
RGSC_v3.42158,513,404 - 158,513,649UniSTSRGSC3.4
Celera2147,138,867 - 147,139,112UniSTS
Cytogenetic Map2q31UniSTS
D17S1446E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22152,832,101 - 152,832,510 (-)MAPPERmRatBN7.2
Rnor_6.02172,367,777 - 172,368,185NCBIRnor6.0
Rnor_5.02191,716,355 - 191,716,763UniSTSRnor5.0
Cytogenetic Map2q31UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
631520Bp73Blood pressure QTL 730.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147686913168355276Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072175950118Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2152413072175950118Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072175950118Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072175950118Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2152413072175950118Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072175950118Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:95
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000057473
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 43 2 2 4 2 8 11 74 22 33 11 8
Low 3 52 36 15 36 13 8
Below cutoff 3 3 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000057473   ⟹   ENSRNOP00000054283
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2152,126,953 - 152,888,584 (+)Ensembl
Rnor_6.0 Ensembl2172,312,332 - 172,459,165 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085876   ⟹   ENSRNOP00000069226
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2152,838,509 - 152,888,579 (+)Ensembl
Rnor_6.0 Ensembl2172,312,298 - 172,361,779 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096555   ⟹   ENSRNOP00000088969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2152,826,697 - 152,888,584 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110983   ⟹   ENSRNOP00000082059
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2152,305,857 - 152,888,585 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115543   ⟹   ENSRNOP00000097397
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2152,305,226 - 152,888,584 (+)Ensembl
RefSeq Acc Id: NM_001100666   ⟹   NP_001094136
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,127,171 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 173,087,236 (-)NCBI
Rnor_5.02191,602,249 - 191,796,738 (-)NCBI
Rnor_5.02192,261,956 - 192,275,730 (-)NCBI
RGSC_v3.42157,848,639 - 158,631,796 (+)RGD
Celera2146,498,127 - 147,247,765 (+)RGD
Sequence:
RefSeq Acc Id: XM_008761079   ⟹   XP_008759301
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,749,720 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 172,463,409 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761080   ⟹   XP_008759302
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,750,448 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 172,459,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761082   ⟹   XP_008759304
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,838,285 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 172,364,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761083   ⟹   XP_008759305
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,827,172 - 152,888,587 (+)NCBI
Rnor_6.02172,312,290 - 172,373,132 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102019   ⟹   XP_038957947
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22152,749,540 - 152,888,587 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001094136   ⟸   NM_001100666
- UniProtKB: Q562A8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759301   ⟸   XM_008761079
- Peptide Label: isoform X2
- UniProtKB: F1M6Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759302   ⟸   XM_008761080
- Peptide Label: isoform X2
- UniProtKB: F1M6Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759305   ⟸   XM_008761083
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008759304   ⟸   XM_008761082
- Peptide Label: isoform X3
- UniProtKB: B5DFD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000054283   ⟸   ENSRNOT00000057473
RefSeq Acc Id: ENSRNOP00000069226   ⟸   ENSRNOT00000085876
RefSeq Acc Id: XP_038957947   ⟸   XM_039102019
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000088969   ⟸   ENSRNOT00000096555
RefSeq Acc Id: ENSRNOP00000082059   ⟸   ENSRNOT00000110983
RefSeq Acc Id: ENSRNOP00000097397   ⟸   ENSRNOT00000115543
Protein Domains
SCHIP-1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6Q1-F1-model_v2 AlphaFold F1M6Q1 1-457 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691382
Promoter ID:EPDNEW_R1903
Type:single initiation site
Name:Schip1_1
Description:schwannomin interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02172,361,725 - 172,361,785EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
2 172458599 172458600 C G snv ACI/N (MCW)
2 172458887 172458888 C A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), MHS/Gib (RGD), MNS/Gib (RGD), SBH/Ygl (RGD), SBN/Ygl (RGD), SS/JrHsdMcwi (RGD), WAG/Rij (RGD), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), MWF/Hsd (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
2 158488587 158488588 G T snv ACI/EurMcwi (MCW), LCR/2Mco (UMich), GH/OmrMcwi (MCW), ACI/EurMcwi (ICL), BBDP/WorN (ICL), MHS/Gib (ICL), MNS/Gib (ICL), SBH/Ygl (ICL), SBN/Ygl (ICL), SS/Jr (ICL), SS/JrHsdMcwi (ICL), WAG/Rij (ICL), HCR/1Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich), COP/CrCrl (MCW & UW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
2 152751092 152751093 G T snv ACI/EurMcwi (2019), ACI/N (2020), WAG/RijCrl (2020), MWF/Hsd (2019), SS/JrHsdMcwi (2019), BUF/N (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309962 AgrOrtholog
BioCyc Gene G2FUF-52858 BioCyc
Ensembl Genes ENSRNOG00000009276 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000054283 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000069226 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000088969 ENTREZGENE
  ENSRNOP00000097397 ENTREZGENE
Ensembl Transcript ENSRNOT00000057473 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000085876 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000096555 ENTREZGENE
  ENSRNOT00000115543 ENTREZGENE
IMAGE_CLONE IMAGE:7312620 IMAGE-MGC_LOAD
InterPro SCHIP_1 UniProtKB/TrEMBL
  SCHIP_1 UniProtKB/TrEMBL
KEGG Report rno:295105 UniProtKB/TrEMBL
MGC_CLONE MGC:109287 IMAGE-MGC_LOAD
NCBI Gene 295105 ENTREZGENE
PANTHER PTHR13103 UniProtKB/TrEMBL
Pfam SCHIP-1 UniProtKB/TrEMBL
PhenoGen Schip1 PhenoGen
UniProt B5DFD3 ENTREZGENE, UniProtKB/TrEMBL
  F1M6Q1 ENTREZGENE, UniProtKB/TrEMBL
  Q562A8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Schip1  schwannomin interacting protein 1  Schip1_predicted  schwannomin interacting protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Schip1_predicted  schwannomin interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED