UFM1 (ubiquitin fold modifier 1) - Rat Genome Database
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Gene: UFM1 (ubiquitin fold modifier 1) Sus scrofa
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Symbol: UFM1
Name: ubiquitin fold modifier 1
RGD ID: 14077309
Description: INVOLVED IN negative regulation of apoptotic process (ortholog); protein ufmylation (ortholog); response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH hypomyelinating leukodystrophy 14 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin-fold modifier 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1113,765,497 - 14,057,370 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11113,516,814 - 13,779,446 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
endoplasmic reticulum  (IEA,ISO)
nucleus  (IBA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
UFM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1113,765,497 - 14,057,370 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11113,516,814 - 13,779,446 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UFM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1338,349,849 - 38,363,619 (+)EnsemblGRCh38hg38GRCh38
GRCh381338,349,851 - 38,363,619 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371338,923,988 - 38,937,756 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361337,822,018 - 37,835,140 (+)NCBINCBI36hg18NCBI36
Celera1319,977,744 - 19,990,945 (+)NCBI
Cytogenetic Map13q13.3NCBI
HuRef1319,722,742 - 19,735,946 (+)NCBIHuRef
CHM1_11338,891,703 - 38,904,942 (+)NCBICHM1_1
Ufm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39353,760,797 - 53,771,228 (-)NCBIGRCm39mm39
GRCm39 Ensembl353,760,797 - 53,771,251 (-)Ensembl
GRCm38353,853,376 - 53,863,807 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl353,853,376 - 53,863,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv37353,659,131 - 53,667,729 (-)NCBIGRCm37mm9NCBIm37
MGSCv36353,943,141 - 53,951,701 (-)NCBImm8
Celera353,576,873 - 53,585,471 (-)NCBICelera
Cytogenetic Map3CNCBI
Ufm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22137,969,476 - 137,977,620 (-)NCBI
Rnor_6.0 Ensembl2143,096,271 - 143,104,412 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02143,096,268 - 143,104,412 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02162,779,816 - 162,788,185 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42143,057,364 - 143,064,329 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12143,007,998 - 143,014,760 (-)NCBI
Celera2132,453,719 - 132,461,863 (-)NCBICelera
Cytogenetic Map2q26NCBI
Ufm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554317,860,706 - 7,872,972 (-)NCBIChiLan1.0ChiLan1.0
UFM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11338,162,598 - 38,175,814 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1338,162,598 - 38,175,814 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01319,571,114 - 19,584,259 (+)NCBIMhudiblu_PPA_v0panPan3
UFM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl252,386,609 - 2,547,311 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1252,427,521 - 2,547,449 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ufm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004937057143,001 - 153,873 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UFM1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1316,812,925 - 16,826,011 (+)NCBI
ChlSab1.1 Ensembl316,813,148 - 16,823,910 (+)Ensembl
Ufm1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249201,318,468 - 1,477,045 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000089604   ⟹   ENSSSCP00000072581
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1113,765,497 - 14,057,370 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089708   ⟹   ENSSSCP00000072064
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1113,765,497 - 14,057,370 (+)Ensembl
RefSeq Acc Id: XM_013980460   ⟹   XP_013835914
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11113,762,330 - 13,765,563 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065265   ⟹   XP_020920924
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11113,516,814 - 13,779,439 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002336497
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11113,516,814 - 13,779,439 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002336499
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11113,516,814 - 13,779,446 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013835914 (Get FASTA)   NCBI Sequence Viewer  
  XP_020920924 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAA74150 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020920924   ⟸   XM_021065265
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013835914   ⟸   XM_013980460
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000072581   ⟸   ENSSSCT00000089604
RefSeq Acc Id: ENSSSCP00000072064   ⟸   ENSSSCT00000089708


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000045890 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070003818 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000072064 UniProtKB/TrEMBL
  ENSSSCP00000072581 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070005848 UniProtKB/TrEMBL
  ENSSSCP00070005853 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000089604 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000089708 UniProtKB/TrEMBL
  ENSSSCT00070007150 UniProtKB/TrEMBL
  ENSSSCT00070007155 UniProtKB/TrEMBL
InterPro Ubiquitin-like_domsf UniProtKB/TrEMBL
  UFM1 UniProtKB/TrEMBL
NCBI Gene UFM1 ENTREZGENE
PANTHER PTHR15825 UniProtKB/TrEMBL
Pfam Ufm1 UniProtKB/TrEMBL
PIRSF Ubiquitin-like_Ufm1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A4X1SUI4_PIG UniProtKB/TrEMBL
  A0A5G2RJK5_PIG UniProtKB/TrEMBL
  M3UZ42_PIG UniProtKB/TrEMBL