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Gene: Prpf38b (pre-mRNA processing factor 38B) Rattus norvegicus
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Symbol: Prpf38b
Name: pre-mRNA processing factor 38B
Description: Predicted to be involved in RNA splicing and mRNA processing. Predicted to localize to the precatalytic spliceosome. Orthologous to human PRPF38B (pre-mRNA processing factor 38B); PARTICIPATES IN spliceosome pathway; INTERACTS WITH bisphenol A; decabromodiphenyl ether; glycidol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC499691; pre-mRNA-splicing factor 38B; PRP38 pre-mRNA processing factor 38 (yeast) domain containing B; PRP38 pre-mRNA processing factor 38 domain containing B; similar to sarcoma antigen NY-SAR-27
Orthologs:
Homo sapiens (human) : PRPF38B (pre-mRNA processing factor 38B)  HGNC  Alliance
Mus musculus (house mouse) : Prpf38b (PRP38 pre-mRNA processing factor 38 (yeast) domain containing B)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prpf38b (pre-mRNA processing factor 38B)
Pan paniscus (bonobo/pygmy chimpanzee) : PRPF38B (pre-mRNA processing factor 38B)
Canis lupus familiaris (dog) : PRPF38B (pre-mRNA processing factor 38B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prpf38b (pre-mRNA processing factor 38B)
Sus scrofa (pig) : PRPF38B (pre-mRNA processing factor 38B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02211,706,245 - 211,715,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,706,228 - 211,715,311 (-)Ensembl
Rnor_5.02231,180,383 - 231,189,409 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,509,110 - 204,518,135 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2189,201,471 - 189,210,495 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prpf38b
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1562940
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.