Pglyrp4 (peptidoglycan recognition protein 4) - Rat Genome Database

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Gene: Pglyrp4 (peptidoglycan recognition protein 4) Rattus norvegicus
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Symbol: Pglyrp4
Name: peptidoglycan recognition protein 4
RGD ID: 1308520
Description: Predicted to enable peptidoglycan binding activity; peptidoglycan immune receptor activity; and protein heterodimerization activity. Predicted to be involved in antimicrobial humoral immune response mediated by antimicrobial peptide; defense response to Gram-positive bacterium; and detection of bacterium. Predicted to act upstream of or within biological process involved in interaction with host; negative regulation of natural killer cell differentiation involved in immune response; and negative regulation of type II interferon production. Predicted to be located in extracellular region. Predicted to be part of protein-containing complex. Orthologous to human PGLYRP4 (peptidoglycan recognition protein 4); INTERACTS WITH bisphenol A; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 2-hydroxypropanoic acid (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC310611; similar to peptidoglycan recognition protein 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,500,238 - 178,669,328 (+)NCBIGRCr8
mRatBN7.22176,202,654 - 176,322,859 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,218,519 - 176,242,251 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,366,868 - 183,388,270 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,389,129 - 181,410,531 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,988,969 - 176,010,345 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02190,125,655 - 190,204,230 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2190,125,693 - 190,148,265 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,561,162 - 209,583,187 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42183,015,945 - 183,038,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,966,023 - 182,988,287 (+)NCBI
Celera2170,152,720 - 170,158,201 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11461926   PMID:15057822   PMID:16354652   PMID:16930467   PMID:17502600   PMID:20709292  


Genomics

Comparative Map Data
Pglyrp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,500,238 - 178,669,328 (+)NCBIGRCr8
mRatBN7.22176,202,654 - 176,322,859 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,218,519 - 176,242,251 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,366,868 - 183,388,270 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,389,129 - 181,410,531 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,988,969 - 176,010,345 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02190,125,655 - 190,204,230 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2190,125,693 - 190,148,265 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,561,162 - 209,583,187 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42183,015,945 - 183,038,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,966,023 - 182,988,287 (+)NCBI
Celera2170,152,720 - 170,158,201 (+)NCBICelera
Cytogenetic Map2q34NCBI
PGLYRP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,330,120 - 153,348,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,330,120 - 153,348,841 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,302,596 - 153,321,317 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,569,220 - 151,587,646 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,115,671 - 150,134,095NCBI
Celera1126,373,854 - 126,392,283 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,666,002 - 124,684,431 (-)NCBIHuRef
CHM1_11154,698,355 - 154,716,780 (-)NCBICHM1_1
T2T-CHM13v2.01152,467,338 - 152,486,071 (-)NCBIT2T-CHM13v2.0
Pglyrp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,634,008 - 90,648,824 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,634,213 - 90,648,824 (+)EnsemblGRCm39 Ensembl
GRCm38390,726,906 - 90,741,517 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,726,906 - 90,741,517 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,530,828 - 90,545,439 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,812,879 - 90,826,437 (+)NCBIMGSCv36mm8
Celera390,768,301 - 90,782,967 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.96NCBI
Pglyrp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955592100,088 - 111,610 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955592100,022 - 111,609 (+)NCBIChiLan1.0ChiLan1.0
PGLYRP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,488,860 - 96,507,602 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,224,504 - 96,243,317 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,681,726 - 128,700,275 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,310,256 - 132,329,013 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,310,256 - 132,329,013 (-)Ensemblpanpan1.1panPan2
PGLYRP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,243,118 - 96,261,495 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,243,174 - 96,247,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24105,054,893 - 105,059,236 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PGLYRP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,406,242 - 10,422,989 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,405,138 - 10,422,625 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,873,349 - 9,892,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Pglyrp4
371 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000029771
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system reproductive system respiratory system
High
Medium
Low 2 4 9
Below cutoff 1 16 11 14 11 19 2

Sequence


RefSeq Acc Id: ENSRNOT00000029771   ⟹   ENSRNOP00000029961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2176,218,519 - 176,242,251 (+)Ensembl
Rnor_6.0 Ensembl2190,125,693 - 190,148,265 (+)Ensembl
RefSeq Acc Id: NM_001191708   ⟹   NP_001178637
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,517,459 - 178,538,855 (+)NCBI
mRatBN7.22176,219,881 - 176,241,275 (+)NCBI
Rnor_6.02190,127,055 - 190,148,067 (+)NCBI
Rnor_5.02209,561,162 - 209,583,187 (+)NCBI
Celera2170,152,720 - 170,158,201 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001412554   ⟹   NP_001399483
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,500,238 - 178,539,868 (+)NCBI
mRatBN7.22176,202,658 - 176,242,288 (+)NCBI
RefSeq Acc Id: XM_039102299   ⟹   XP_038958227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,500,257 - 178,539,868 (+)NCBI
mRatBN7.22176,202,654 - 176,242,288 (+)NCBI
RefSeq Acc Id: XM_063281820   ⟹   XP_063137890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,500,265 - 178,582,680 (+)NCBI
RefSeq Acc Id: XM_063281821   ⟹   XP_063137891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,500,262 - 178,582,680 (+)NCBI
RefSeq Acc Id: XM_063281822   ⟹   XP_063137892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,500,263 - 178,589,067 (+)NCBI
RefSeq Acc Id: XR_005500289
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,500,263 - 178,669,328 (+)NCBI
mRatBN7.22176,202,655 - 176,322,859 (+)NCBI
RefSeq Acc Id: XR_010063605
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,500,258 - 178,577,315 (+)NCBI
RefSeq Acc Id: XR_010063606
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,500,258 - 178,577,303 (+)NCBI
RefSeq Acc Id: NP_001178637   ⟸   NM_001191708
- Peptide Label: precursor
- UniProtKB: D4AEA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029961   ⟸   ENSRNOT00000029771
RefSeq Acc Id: XP_038958227   ⟸   XM_039102299
- Peptide Label: isoform X4
- UniProtKB: D4AEA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399483   ⟸   NM_001412554
- Peptide Label: precursor
- UniProtKB: D4AEA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137891   ⟸   XM_063281821
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063137892   ⟸   XM_063281822
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063137890   ⟸   XM_063281820
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AEA3-F1-model_v2 AlphaFold D4AEA3 1-384 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308520 AgrOrtholog
BioCyc Gene G2FUF-52320 BioCyc
Ensembl Genes ENSRNOG00000021798 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029771 ENTREZGENE
  ENSRNOT00000029771.6 UniProtKB/TrEMBL
Gene3D-CATH 3.40.80.10 UniProtKB/TrEMBL
InterPro Amidase_2 UniProtKB/TrEMBL
  Amidase_sf UniProtKB/TrEMBL
  PGRP UniProtKB/TrEMBL
  PGRP_met/bac UniProtKB/TrEMBL
NCBI Gene 310611 ENTREZGENE
PANTHER PEPTIDOGLYCAN RECOGNITION PROTEIN 3 UniProtKB/TrEMBL
  PGRPs UniProtKB/TrEMBL
Pfam Amidase_2 UniProtKB/TrEMBL
PhenoGen Pglyrp4 PhenoGen
RatGTEx ENSRNOG00000021798 RatGTEx
SMART Ami_2 UniProtKB/TrEMBL
  PGRP UniProtKB/TrEMBL
Superfamily-SCOP Amidase_2 UniProtKB/TrEMBL
UniProt D4AEA3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Pglyrp4  peptidoglycan recognition protein 4  LOC686750  similar to peptidoglycan recognition protein 4  Data merged from RGD:1593711 1643240 APPROVED
2008-04-30 Pglyrp4  peptidoglycan recognition protein 4   Pglyrp4_predicted  peptidoglycan recognition protein 4 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC686750  similar to peptidoglycan recognition protein 4      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Pglyrp4_predicted  peptidoglycan recognition protein 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED