Memor19 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Memor19 (Memory QTL 19) Rattus norvegicus

Symbol: Memor19
Name: Memory QTL 19
RGD ID: 7771605
Previously known as: BP-f4/NAV-8 QTLs
Trait: exploratory behavior trait   (VT:0010471)    
Measurement Type: measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus   (CMO:0000957)    
LOD Score: Not Available
P Value: 1.0E-5
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22170,201,741 - 173,290,301RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02183,864,092 - 187,196,901RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02203,270,720 - 206,602,006RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42176,635,705 - 179,892,073RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SS.SR-(D2Rat352-rs63922710)/Opaz 



Candidate Gene Status
Dear is a candidate Gene for Memor19

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Sex-specific effects on spatial learning and memory, and sex-independent effects on blood pressure of a <3.3 Mbp rat chromosome 2 QTL region in Dahl salt-sensitive rats. Herrera VL, etal., PLoS One. 2013 Jul 4;8(7):e67673. doi: 10.1371/journal.pone.0067673. Print 2013.
Related QTLs

Related QTL Description Reference
Bp371 maps to same region RGD:7495755


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2321145Fbxw7F-box and WD repeat domain containing 72170149706170311536Rat
1303105Deardual endothelin 1, angiotensin II receptor2170296930170300182Rat
11514812LOC108350048uncharacterized LOC1083500482170361754170362925Rat
7612486LOC102552432uncharacterized LOC1025524322170390448170457701Rat
7544419LOC102552358uncharacterized LOC1025523582170466538170468509Rat
7498945LOC102552298uncharacterized LOC1025522982170540147170542332Rat
7653667LOC102552233uncharacterized LOC1025522332170542421170561578Rat
9089372LOC103691600uncharacterized LOC1036916002170741284170781379Rat
9455736LOC103691602uncharacterized LOC1036916022170749182170756148Rat
7746019Fdps-ps3farnesyl diphosphate synthase, pseudogene 32170791328170794734Rat
9121826LOC103691599uncharacterized LOC1036915992170831712170849373Rat
11516975LOC108350049uncharacterized LOC1083500492170869965170900284Rat
1307864Gatbglutamyl-tRNA amidotransferase subunit B2170930547171017133Rat
1565007Fhip1aFHF complex subunit HOOK interacting protein 1A2171016951171265715Rat
9365434Alg13l-ps1ALG13, UDP-N-acetylglucosaminyltransferase subunit like, pseudogene 12171237400171256941Rat
11364935LOC10835005160S ribosomal protein L7a-like2171283328171303122Rat
1598350Cpsf3-ps1cleavage and polyadenylation specific factor 3, pseudogene 12171349626171352475Rat
1304885Sh3d19SH3 domain containing 192171356244171516042Rat
11436036Prss48serine protease 482171358946171387051Rat
62078Rps3aribosomal protein S3a2171524685171529054Rat
41361011Snord73asmall nucleolar RNA, C/D box 73A2171525510171525579Rat
41128133Snord73bsmall nucleolar RNA, C/D box U73B2171527196171527269Rat
1311428LrbaLPS responsive beige-like anchor protein2171623668172202576Rat
41069796LOC120101357small nucleolar RNA SNORA172171676727171676830Rat
1595520Mab21l2mab-21 like 22171946573171949655Rat
1308384Dclk2doublecortin-like kinase 22172202733172338411Rat
41303056LOC120101381U1 spliceosomal RNA2172347860172348023Rat
2296Cd1d1CD1d1 molecule2172423582172427089Rat
41039855Trnar-acgtransfer RNA arginine (anticodon ACG)2172432014172432094Rat
1592019Aimp1-ps3aminoacyl tRNA synthetase complex-interacting multifunctional protein 1, pseudogene 32172452808172453923Rat
41193345LOC120101301small nucleolar RNA SNORA172172509694172509822Rat
727883Kirrel1kirre like nephrin family adhesion molecule 12172521644172615057Rat
40929104LOC120101284small nucleolar RNA SNORA172172683386172683519Rat
1306885Fcrl2Fc receptor-like 22172694308172707261Rat
1592018Elp4-ps1elongator acetyltransferase complex subunit 4, pseudogene 12172729315172730773Rat
1308526Cd5lCd5 molecule-like2172791007172802018Rat
1589411Fcrl1Fc receptor-like 12172809442172829780Rat
11443353LOC108350053uncharacterized LOC1083500532172855048172864878Rat
1589379Fcrl5Fc receptor-like 52172881763172912912Rat
1311577Etv3ETS variant transcription factor 32172965461172980320Rat
1562620Etv3lETS variant transcription factor 3 like2172991616173004424Rat
2319935Cbx3-ps4chromobox 3, pseudogene 42173015332173016627Rat
1563314Pgam1-ps9phosphoglycerate mutase 1, pseudogene 92173024917173026131Rat
1588194Hnrnpf-ps2heterogeneous nuclear ribonucleoprotein F, pseudogene 22173029634173030956Rat
41353053LOC120101281small nucleolar RNA SNORA172173043652173043778Rat
7594981LOC102546356uncharacterized LOC1025463562173067942173074291Rat
619705Arhgef11Rho guanine nucleotide exchange factor 112173074383173195962Rat
1309453Lrrc71leucine rich repeat containing 712173194792173207448Rat
1305653Pear1platelet endothelial aggregation receptor 12173206298173234106Rat
620144Ntrk1neurotrophic receptor tyrosine kinase 12173236961173253806Rat
67399Insrrinsulin receptor-related receptor2173255335173274800Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10814D5Mgh71442173254996173255140Ratregion
34292D2Mgh81082172710921172711029Ratregion
37444D2Rat1622442170967158170967402Ratregion
38068D2Rat1552042172982062172982266Ratregion
38088D2Rat1312212172710921172711135Ratregion
38980D2Rat1302092172756209172756418Ratregion
41696D2Rat2842072171329978171330185Ratregion
43555D2Got652482170701342170701590Ratregion
43556D2Got1852642170745231170745495Ratregion
60581D7Got551662171276719171276885Ratregion
60336D2Got632182170660843170661061Ratregion
66390D2Mco452442173103977173104221Ratregion
67311D2Arb142152173254993173255208Ratregion
1628161D2Ulb121462170546540170546686Ratregion
1628991D2Got3481342171366378171366512Ratregion
1632840D2Got3441362170889226170889362Ratregion
1640555D2Ulb131772170546489170546666Ratregion
1640613D2Got3472852171608798171609083Ratregion
1638324D2Wox423402172423734172424074Ratregion
7495817rs1068705532170201741170201741Ratregion
7495821rs640880072173290301173290301Ratregion
5035643D4S32311562170687042170687198Ratregion
5034347D17S187302172229616172229912Ratregion
5024978RH1269652052173242538173242743Ratregion
502783908.MMHAP42FLC2.seq1542170661439170661593Ratregion
502789525.MMHAP54FLA4.seq1542172174266172174420Ratregion
5030953BF3997282382170538554170538792Ratregion
5053753RH1428311462172967681172967827Ratregion
5058812BI2846231822173208651173208833Ratregion
5056561RH1444491092172317383172317492Ratregion
5058438BE0960931762172178806172178982Ratregion
5053483RH1426751002172208714172208814Ratregion
5044018RH1303631912172801486172801677Ratregion
5047504RH1323652012173206418173206619Ratregion
5048086RH1327001812172439681172439862Ratregion
5049404RH1334611812172423703172423884Ratregion
5049404RH1334611812172423703172423991Ratregion
5042702RH1295942042170781148170781352Ratregion
5040330RH1282211902172730593172730783Ratregion
5074114RH1378302302171522027171522257Ratregion
5075256RH1384891682172810403172810571Ratregion
5075650RH1387171442173208529173208673Ratregion
5072810RH1370662002172152130172152330Ratregion
5079732RH1411712012171515741171515942Ratregion
5078004RH1400861932172454003172454196Ratregion
5080178RH1414301982172855151172856415Ratregion
5067278AU0478521482170889225170889373Ratregion
5060380AW5319562052171418287171418492Ratregion
5062946BI2890891072173194055173194162Ratregion
5064478BF3992961622170821852170822014Ratregion
5064572BF399371922171402748171402840Ratregion
5063028BF3982611372172208889172209026Ratregion
5066362PMC164293P32032172527567172527770Ratregion
5061414BF3963701632172557536172557699Ratregion
5061522BE1053962052170540161170540366Ratregion
5089077AU0489412792172383973172384252Ratregion
5089813AU0493782432172569537172569780Ratregion
5084020AI4081871662172805233172805399Ratregion
5080840RH1418131892171514347171514536Ratregion
5084976AI4125431422170831953170832095Ratregion
5081446AI5553982122172521786172521998Ratregion
5083863AI4065802312171515186171515417Ratregion
5503428UniSTS:5283511702173280707173281877Ratregion
5506049Fbxw73742170283174170283548Ratregion
5499793UniSTS:2347172002172265270172265470Ratregion
5499797UniSTS:2347202342172525660172525894Ratregion
5500893SGC3017111162172356768172357884Ratregion
Position Markers

Flank 1: (rs106870553)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22170,201,741 - 170,201,741RGD
Rnor_6.02183,864,092 - 183,864,092RGD
Celera2164,196,006 - 164,196,006RGD
Flank 2: (rs64088007)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22173,290,301 - 173,290,301RGD
Rnor_6.02187,196,901 - 187,196,901RGD
Celera2167,240,071 - 167,240,071RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072175950118Rat
61473Bp19Blood pressure QTL 196.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921175950118Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2152413072175950118Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072175950118Rat
7771605Memor19Memory QTL 190.00001exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)2170201741173290301Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
7771603Bp371Blood pressure QTL 3710.00001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2170201741173290301Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072175950118Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072175950118Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2152413072175950118Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
7488904Bp363Blood pressure QTL 3630.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2172982062175950118Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 16 gender: male 7495755
qtl_general measurement method: animals were phenotyped using the Morris water maze (MWM), test of spatial navigation, distance was measured and used to evaluate performance, 12 trails/day for 2 days with a 60 sec maximum swim time 7495755
qtl_general software package used: ANOVA followed by Holm-Sidak test 7495755
qtl_general Co-localizes with Bp371 (BP-f4) QTL 7495755
qtl_general spans between 176.6-179.9 Mbp 7495755
qtl_general incorporates 36 annotated genes 7495755