Sass6 (SAS-6 centriolar assembly protein)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Sass6 (SAS-6 centriolar assembly protein) Rattus norvegicus

Analyze

Symbol:

Sass6

Name:

SAS-6 centriolar assembly protein

RGD ID:

1306255

Description:

Predicted to be involved in centriole replication. Predicted to localize to cytosol; deuterosome; and microtubule organizing center. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 14. Orthologous to human SASS6 (SAS-6 centriolar assembly protein); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC310807; RGD1306255; similar to 2810453L12Rik protein; spindle assembly 6 homolog; spindle assembly 6 homolog (C. elegans); spindle assembly abnormal protein 6 homolog

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	2	219,626,851 - 219,660,975 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	219,628,695 - 219,652,968 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	237,557,441 - 237,588,679 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	212,825,474 - 212,849,747 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	212,788,526 - 212,818,898 (+)	NCBI
Celera	2	197,038,483 - 197,062,724 (+)	NCBI		Celera
Cytogenetic Map	2	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

primary autosomal recessive microcephaly 14 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4-hydroxynon-2-enal (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

cisplatin (ISO)

CU-O LINKAGE (ISO)

decabromodiphenyl ether (EXP)

diazinon (EXP)

dicrotophos (ISO)

dioxygen (ISO)

folic acid (ISO)

formaldehyde (ISO)

leflunomide (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

sodium dodecyl sulfate (ISO)

testosterone (ISO)

tributylstannane (EXP)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

centriole replication (ISO)

centrosome duplication (ISO)

Cellular Component

centriolar satellite (IEA,ISO)

centriole (ISO)

centrosome (ISO)

cytosol (IEA,ISO)

deuterosome (ISO)

Molecular Function

protein binding (ISO)

References

References - curated


1.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15665853	PMID:16244668	PMID:17681131	PMID:21399614	PMID:22020124	PMID:22349705	PMID:24075808	PMID:24107630	PMID:24421332

Genomics

Comparative Map Data

Sass6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	2	219,626,851 - 219,660,975 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	219,628,695 - 219,652,968 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	237,557,441 - 237,588,679 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	212,825,474 - 212,849,747 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	212,788,526 - 212,818,898 (+)	NCBI
Celera	2	197,038,483 - 197,062,724 (+)	NCBI		Celera
Cytogenetic Map	2	q41	NCBI

SASS6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	100,083,563 - 100,132,955 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	100,082,632 - 100,132,930 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	100,549,100 - 100,598,518 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	100,321,688 - 100,371,099 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	1	98,805,981 - 98,855,389 (-)	NCBI
Cytogenetic Map	1	p21.2	NCBI
HuRef	1	98,671,854 - 98,721,264 (-)	NCBI		HuRef
CHM1_1	1	100,665,439 - 100,715,005 (-)	NCBI		CHM1_1

Sass6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	116,388,577 - 116,424,816 (+)	NCBI	GRCm39		mm39
GRCm38	3	116,594,938 - 116,630,986 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	116,594,982 - 116,631,004 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	116,297,926 - 116,333,902 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	116,587,012 - 116,621,151 (+)	NCBI			mm8
Celera	3	123,022,163 - 123,057,932 (+)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI

Sass6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	4,832,284 - 4,879,010 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	4,832,284 - 4,876,077 (-)	NCBI	ChiLan1.0	ChiLan1.0

SASS6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	101,457,559 - 101,506,348 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	101,459,348 - 101,506,072 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	102,741,808 - 102,790,850 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SASS6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	6	49,859,182 - 49,900,757 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	6	49,859,597 - 49,902,407 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Sass6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936748	249,216 - 290,062 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SASS6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	117,985,142 - 118,050,047 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	117,985,599 - 118,049,129 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SASS6
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	20	33,205,742 - 33,257,170 (+)	Ensembl
ChlSab1.1	20	33,205,538 - 33,254,292 (+)	NCBI

Sass6
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624857	2,872,335 - 2,930,481 (-)	NCBI

Position Markers

D2Got135

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	69,825,734 - 69,825,975	NCBI	Rnor6.0
Rnor_6.0	2	219,656,215 - 219,656,456	NCBI	Rnor6.0
Rnor_5.0	1	71,222,654 - 71,222,895	UniSTS	Rnor5.0
Rnor_5.0	2	237,561,960 - 237,562,201	UniSTS	Rnor5.0
RGSC_v3.4	2	212,852,993 - 212,853,235	RGD	RGSC3.4
RGSC_v3.4	2	212,852,994 - 212,853,235	UniSTS	RGSC3.4
RGSC_v3.1	2	212,815,748 - 212,815,989	RGD
Celera	2	197,065,971 - 197,066,224	UniSTS
Cytogenetic Map	2	q41	UniSTS
RH 3.4 Map	2	1479.9	RGD
RH 3.4 Map	2	1479.9	UniSTS
RH 2.0 Map	2	1044.8	RGD

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61458	Bp10	Blood pressure QTL 10	3.42		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204003742	231132207	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	184730446	229730446	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	184730446	229730446	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	149114878	225501939	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	181990297	240020001	Rat
1331745	Bp203	Blood pressure QTL 203	4.377		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204585642	235290110	Rat
1298083	Bp158	Blood pressure QTL 158	2.62		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204003742	231132207	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147122993	240020001	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	147122993	240020001	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	183984665	228984665	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	204585642	243689611	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	199380312	244380312	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	116075644	228737869	Rat
1302789	Stl26	Serum triglyceride level QTL 26	3.1	0.0035	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	218957047	240977220	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	155965557	254121739	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	155965557	237742948	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	214870793	251212353	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	217743855	262743855	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	181522444	226522444	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	205583921	243562243	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	217498545	254132424	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	194378622	239378622	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	116075644	228737869	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	175403337	239166203	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	118446646	227707979	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	75687495	221880419	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83819608	239166203	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66828236	243550655	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83819608	243901375	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	142053350	228984665	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	118446793	228582621	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	177680772	243901375	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	200453324	236318668	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	200453324	236318668	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	208594330	263179188	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	188838511	228984665	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	204585642	249585642	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204585642	249585642	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	194998627	239998627	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	197253963	242253963	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	197253963	242253963	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	197253963	242253963	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	177339806	222339806	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	169852670	243026643	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83754907	237610852	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	197253963	242253963	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	16679272	245624402	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	40
Count of miRNA genes:	38
Interacting mature miRNAs:	39
Transcripts:	ENSRNOT00000067324
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			4		4				12		5
Low	3	41	46	34	15	34	8	8	62	34	36	11	8
Below cutoff		2	7	7		7		2		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAHX01019795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC119448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000067324 ⟹ ENSRNOP00000063437

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	219,628,695 - 219,652,968 (+)	Ensembl

RefSeq Acc Id:

NM_001107719 ⟹ NP_001101189

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	219,628,695 - 219,652,968 (+)	NCBI
Rnor_5.0	2	237,557,441 - 237,588,679 (-)	NCBI
RGSC_v3.4	2	212,825,474 - 212,849,747 (+)	RGD
Celera	2	197,038,483 - 197,062,724 (+)	RGD

Sequence:

show sequence

CGGCCACCACCATCCTGCAGAAGCGCTTCTTCTTTTCCACAAAGTAGTTGCATCTACCGTCAGT
TGGAAAACCGATCGCGGGCGTTGTCGGAGCAGGAGCCTCCATCACGCTGGGTCCTTTTGGCCTG
GCTCAACCCAAAGTTGTCAATTCCCTCTGGTCCCGCTTCCCTTAACAAACGTGGCCGCCTGAAG
GGGGTGGGACCACGGAAATTACGCATCACCCTGACTTATTCGTTCCCTCAACCGGAAGAAAGTG
ATGGTGGCTGAAGAGGTCCAAACCTCCTTCGTTCCCTCTGTTTATCGTTCCCCTCCTCCGCCGG
AGCTGAGCGCCAAACTCAAACTTAGTCTGGAGCAGTACTTCTTTTAAGCTGGTACCGCGGGCCA
GGCCTACTGGGCTTTTTCACTCACGGGTCGGGGCAGCGGTCCGACATGAGTCAAGTTCTGTTCC
AGCAACTTGTTCCCTTGCTAGTGAAATGCAAAGACTGCGAGGAGAGGAGAGGGAGCGTTAGAGT
GAGCATTGAACTACAGTCACTGTCTAATCCAGTACACAGAAAGGATCTAGTCATCCGTCTGACT
GATGATACAGATCCATTTTTTCTGTATAACCTTGTTATATCCGAGGAAGACTTTCAAAGTTTAA
AATTGCAGCAAGGTCTCCTGGTGGACTTCTTATCTTTTCCACAGAAGTTTATAGACCTCCTTCA
GCAATGTATGCAGGAGCATGTGAAAGAGACTCCAAGGTTTCTGCTGCAGCTCACGTCTTCAGCT
GCTCTTTTGGATAACTCGCCGGTGTTTTTAAATGTAGTGGAGACAAATCCTTTTAAGCATCTTA
TTCACCTGTCACTAAAGCTTTTACCTGGAAATGATGTAGAAATAAAGAAATTTCTAGCAGGATG
CTTGAAATGTAGCAAGGAAGAAAAATTATCACTGACTAAATCACTAGATGATGTTACCAGGCAA
CTGCACATTACACAAGAGACACTCTCGGAAAAGATGCAGGAACTAGATAAGTTGCGGAGTGAGT
GGGCCTCGCACACAGCAGCGCTGACCAATAAGCACTCCCAGGAGTTAACAAACGAGAAGGAGAA
AGCCTTGCAGACACAAGTTCAGTACCAACAGCAGCATGAACAACAGAAAAAGGATCTGGAAGCC
CTCCATCAACGAAATATCCACCAGCTACAAAACAGATTGTCTGAGTTAGAGGCAGCTAATAAAG
AGCTCACCGAGAGGAAGTATAAAGGAGACTCCACTGTCAGAGAACTAAAAGCGAAGCTTGCTGG
TGTGGAAGAGGAGCTGCAGCGGACCAAGCAAGAGGTCCTTTCTCTGAGAAGAGAGAATTGTACT
CTGGATACTGAATGCCACGAGAAAGAAAAGCATATTAACCAGCTACAAACAAAAGTGGCCGTTT
TAGAACAGGAGATCAAGGATAAAGACCAGCTTGTTCTGAGAACAAAAGAAGCATTCGATACAAT
CCAAGAGCAAAAGGTGGCTTTAGAAGAAAATGGTGAGAAAAATCAGATACAATTGGGAAAACTT
GAAGCTACAATAAAATCATTATCAGCAGAACTTCTAAAGGCGAATGAGATTATCAAGAAGTTAC
AAGGAGATCTTAAAACTCTGATGGGTAAATTGAAACTGAAGAATACAGTTACTATTCAGCAAGA
AAAGCTATTGGCTGAGAAAGAAGAAATGCTACAAAAGGAGCGAAAGGAATCACAGGATGCTGGG
CAGTCTCTTCGGGCCAAAGAGCAAGAGGTATGCAGATTACAAGAACAATTAGAAACTACAGTTC
AGAAACTTGAAGAAAGTAAACAACTTTTGAAAAATAATGAAAAATTAATCACATGGCTAAACAA
AGAACTAAATGAAAACCAGCTGGGAAGAAAGCAAGACACACTGGGGGCCTCTGCCACCCCACCC
ACACATTCTGCTAGCAACACCGTCAGAAGTGGGCTTTCTCCCAGCCTGAATGTGGTTGATAGTA
GACTAAATTACCCAAGCTGTGGAATTGGCTATCCTGTCTCGTCTGCGTTCACATTCCAGAATGC
TTTTCCTCATGCAGTAGTTGCCAAAAACACCAGCCATCCAGTCTCTGGACCAAAGGTAGACAAG
TATAATGTGTTAGATGAATACTGACTCTCCAGTATGTGCTTAAAGGAAATGC

hide sequence

RefSeq Acc Id:

XM_006233227 ⟹ XP_006233289

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	219,626,852 - 219,660,975 (+)	NCBI
Rnor_5.0	2	237,557,441 - 237,588,679 (-)	NCBI

Sequence:

show sequence

CTGAGCTAAATCCCCAACCCCTGCATACTTATTCTTTAATTTTAAAATGTTGCCCATTTAAACT
GATTTTAGAATGCGTATTTATCTAAAGCTGTTTAAACGTAGGGAAATGCTGGGCGTGGTGGACC
ATGCTTTGAATATCAGCACTGCGGAGGAAAGGCAGACAGAGCTTTTGAGCCAAAGACCAGCCAG
GGTAACCCTCAGGCCCTGTCTCAATAAAGACAGAAATCAAATACAGGAGAACGTATGACAGGAA
CAACGAGGCATGGTACTTTAACAATTTAGAATGGGTCATATTCCCTGGCTTTGCAACTTTTCAA
AAATGCTAGTTACTGTCTTTCAAGTTATATACATTTAATTATAGGCAACGGGTGGAAAGCAAGA
AAAACCAGTATTGGCATGCCTACCTTACAGACCCTATCAACACATGCACATGATGGCCCAATTA
TTAAAACCAGAGGCCAGTGGTTATGATTCTCAGTTCTTTCTATTAGCTGCTAACTCTATGTCTA
TGACCCAACACTAACACTCACTGCCTCATGTGAATAATAGTATATACTCCCTAAGTATAGACTT
ACTATATCCCTATTAAATAGAATAATAGCATGATTTATTTCCTAAGGTTTGTGAAAATTGAATT
TTTAAAAGAAAAGTAACAATGTTTAGTGCTAGCCATACAGCAAAAGCTGACCAAGTATTTACTC
TTATTTTTTCTCAATTATTTATTTCAATTTATTTCAGAATGTTCATGATGTTATGCACACTGAA
TTTTAGGGAAAGTTAAGAAATTCTCAGTATTAAGAATAACCTATATTATTTCTTCTTCACGTAC
AGATTTTAAAATTTAATTTCCAGTGTGATTGTTTGGTGTTGACCAGCTAGTTGGGAGGCTGAGG
CAGGAGAATTCCTGAGACCAGGTATTCAAGACCAACATGAGAAATTCAGTGAGATCACCATCTC
AAAGACAAACAGGAAAATTGTCTTTCAAGGGAAATAGTAATCTATTCTAGCTTGCAAAGCTAAA
TCGCAGAAAACACACACACACAGGCGCGAGCACACGCACGCGCGCGCGCGCACACACACACACA
CAAAGCATTCTTAATTTAGAAACTGTTATAAAGATGTTTTCTTTTTTGGTGTAGAGGGTGGTGA
GACTTCCTGTGACCTGCGGATTAGTAATTTTCCTGTTCTCTATCCATTTGAAGCCCCTGACATT
TTTGCACTTAGAACCAAAATGTCTTATGACATTAATGTCTGCTGGGGTTGGAAGACAAAAATGC
ACTCTGCTTTCAACTTTTAATGTTAGTTACTTTAGGTTAATTCTTCTTCCCCCTCCCAGAATAA
TAATTACAAGCTCATAAGGTGTTTCCTGGAGAGTTAAGTCTAAACAAAAAACATTTTTTTTCTA
AGTTTCTTCCTCATGCACTCAAGTGGTTATCGTTCAGAAAACAATAAGTATAATTAGAACCCAG
TTAGTAAAGTCTGGTGATTTCAAACACTATTCTGTAAAGATAATCACTTCCCATGAGGATGGGC
GACTGATGGAAGGATGAGCACAAAGATCTCTATGATAGCACAGAGGATCATCTCTTGGCTATTC
TTAGCACTTAGTCCAAGAAAGCAATGTTCCTCAGGAGCTCATCGTGGCTCCAAGCGGTGGTCAG
AACTGCATTTACTTAAGTAAAGGCTGGAGAATCCATGGGGCAGAAGCAGAAACCTGTCAAAGGG
GGTGAGGATGGGTTCCAGCACCCACAGACCAGCAACTCAGTTCCGACTCTCAGGAAGGTAGGGC
GATACCAGACCTCCGCCGATCCAGCGTGTTCACCACAGAACCTTTTCCCCGCGGCCACCACCAT
CCTGCAGAAGCGCTTCTTCTTTTCCACAAAGTAGTTGCATCTACCGTCAGTTGGAAAACCGATC
GCGGGCGTTGTCGGAGCAGGAGCCTCCATCACGCTGGGTCCTTTTGGCCTGGCTCAACCCAAAG
TTGTCAATTCCCTCTGGTCCCGCTTCCCTTAACAAACGTGGCCGCCTGAAGGGGGTGGGACCAC
GGAAATTACGCATCACCCTGACTTATTCGTTCCCTCAACCGGAAGAAAGTGATGGTGGCTGAAG
AGGTCCAAACCTCCTTCGTTCCCTCTGTTTATCGTTCCCCTCCTCCGCCGGAGCTGAGCGCCAA
ACTCAAACTTAGTCTGGAGCAGTACTTCTTTTAAGCTGGTACCGCGGGCCAGGCCTACTGGGCT
TTTTCACTCACGGGTCGGGGCAGCGGTCCGACATGAGTCAAGTTCTGTTCCAGCAACTTGTTCC
CTTGCTAGTGAAATGCAAAGACTGCGAGGAGAGGAGAGGGAGCGTTAGAGTGAGCATTGAACTA
CAGTCACTGTCTAATCCAGTACACAGAAAGGATCTAGTCATCCGTCTGACTGATGATACAGATC
CATTTTTTCTGTATAACCTTGTTATATCCGAGGAAGACTTTCAAAGTTTAAAATTGCAGCAAGG
TCTCCTGGTGGACTTCTTATCTTTTCCACAGAAGTTTATAGACCTCCTTCAGCAATGTATGCAG
GAGCATGTGAAAGAGACTCCAAGGTTTCTGCTGCAGCTCACGTCTTCAGCTGCTCTTTTGGATA
ACTCGCCGGTGTTTTTAAATGTAGTGGAGACAAATCCTTTTAAGCATCTTATTCACCTGTCACT
AAAGCTTTTACCTGGAAATGATGTAGAAATAAAGAAATTTCTAGCAGGATGCTTGAAATGTAGC
AAGGAAGAAAAATTATCACTGACTAAATCACTAGATGATGTTACCAGGCAACTGCACATTACAC
AAGAGACACTCTCGGAAAAGATGCAGGAACTAGATAAGTTGCGGAGTGAGTGGGCCTCGCACAC
AGCAGCGCTGACCAATAAGCACTCCCAGGAGTTAACAAACGAGAAGGAGAAAGCCTTGCAGACA
CAAGTTCAGTACCAACAGCAGCATGAACAACAGAAAAAGGATCTGGAAGCCCTCCATCAACGAA
ATATCCACCAGCTACAAAACAGATTGTCTGAGTTAGAGGCAGCTAATAAAGAGCTCACCGAGAG
GAAGTATAAAGGAGACTCCACTGTCAGAGAACTAAAAGCGAAGCTTGCTGGTGTGGAAGAGGAG
CTGCAGCGGACCAAGCAAGAGGTCCTTTCTCTGAGAAGAGAGAATTGTACTCTGGATACTGAAT
GCCACGAGAAAGAAAAGCATATTAACCAGCTACAAACAAAAGTGGCCGTTTTAGAACAGGAGAT
CAAGGATAAAGACCAGCTTGTTCTGAGAACAAAAGAAGCATTCGATACAATCCAAGAGCAAAAG
GTGGCTTTAGAAGAAAATGGTGAGAAAAATCAGATACAATTGGGAAAACTTGAAGCTACAATAA
AATCATTATCAGCAGAACTTCTAAAGGCGAATGAGATTATCAAGAAGTTACAAGGAGATCTTAA
AACTCTGATGGGTAAATTGAAACTGAAGAATACAGTTACTATTCAGCAAGAAAAGCTATTGGCT
GAGAAAGAAGAAATGCTACAAAAGGAGCGAAAGGAATCACAGGATGCTGGGCAGTCTCTTCGGG
CCAAAGAGCAAGAGGTATGCAGATTACAAGAACAATTAGAAACTACAGTTCAGAAACTTGAAGA
AAGTAAACAACTTTTGAAAAATAATGAAAAATTAATCACATGGCTAAACAAAGAACTAAATGAA
AACCAGCTGGGAAGAAAGCAAGACACACTGGGGGCCTCTGCCACCCCACCCACACATTCTGCTA
GCAACACCGTCAGAAGTGGGCTTTCTCCCAGCCTGAATGTGGTTGATAGTAGACTAAATTACCC
AAGCTGTGGAATTGGCTATCCTGTCTCGTCTGCGTTCACATTCCAGAATGCTTTTCCTCATGCA
GTAGTTGCCAAAAACACCAGCCATCCAGTCTCTGGACCAAAGGTGCAGTTCAGCTTGCAGCTGA
CAAAGCAAAGCACGTCGTCGGGAGATGGGCAGCCGGGAGCGGCTGTTAACAGGTCTGCTTCAGC
TGACAAGGAGAATGGTGAAAATTTAGGATTGGAATCCAAATACTTGAAGAAAAGAGAAGATAGC
ATTCCTTTACGTGGACTCAGCCAGAATCTGTTTAGTAATTCAGACCATCAGAAAGATGGCATGC
TGGGAGCGCTGCAGACATCTTCCAAACCCACAGTCCTGCCCCCATCTTCATCGTATTTTCCTGG
GCCATTACCAAGTAGTTAATCCGACACCTTTCACTGCTTACTGACAGTTTAGAAACTCAAGTGA
CTTAACAGACCATTAATAACACCAGTCTTTTCTTGTTCCTGTTAGGTCATTTGTATCCTTTATA
ATAGTGCTGCCATTGACAAACTTAGGACATTGATAAGGACTCTGAGTAAATGGTATTTTTTTCT
GTGAGCACAACAGAATATTTAAAAAAAAAAAAAGTCACTGAATTGTATCGGATTTTTACCAGTT
GGTCTGAATAGGGACACTAAATCAAAGATAAGCCTGCAGAGAATAGTAGTAACAAGCTGAAGAA
GACTTGTGATTCATACTATCATTTCTGTTATTAAAAAATTATTAATTTGCCACCTGAGAGTTGG
GAGGGCTTCCACCTGTGATCATTGGTCTTTACACTGAGTTAGTATACTACTTTCAAAGGGTTTT
TTTGTTTGTTTTTCTTTGAGATAGGGTCTATTATGTAGTTCAGGCTGCAGAACATGCCATGTAT
GTAGACTAGGCTGGTCTGAAATCCAGATCCGCCTGCCTCTGTCTCCCAACACCTGGTATGTACT
ACTGAGCCTGATTTACACAATGTATTTTGGTTTATTCTTTCTCCTCTCAGGTGCTCTCCAATTT
CCTACCCACCCAATTCCATATTTTCTCCCTTAAAAAGAAAATTAAAATAACCAACCAGTAAGAT
AAAAATATCAAACCAAAACCAATGGATTTGACCTTGTGTTAGTCAACAACTCCTGGGTGTGGGT
GTTTGGAATTTGGCTGATATACTCGATAGTCTTAAGCACTTTGAGTGAAAGTTAAGTATTCGTA
GTGAGCGGATTATTTTCTCTGACATGTTTGATCTATGAAATGATTTTATATAAAAATTGGGCAG
TATATTTACATGACTGAAATGCTTTAGTCGTCTGGGCTGAGCATAGTTGATTTTGACACTTCCA
TACAAGATCATCAGTGGAATAGCACCATAAAAGTTTTTATAATATACTTTTACAATATTTGTGC
TCAGTGTTAATAAAGCAGGCAAGTTAACTATTGGAAGTTACAACTTTCTCATTATTAAAAACTT
CCAAGAATTATTCCTTGGAAATTAAGTAGTTTCAAAAAACAAAACAAAACCAAAACTAACACTC
AGTAATCTTAGAGGTCTAGTTTTGTTTTCTTGTTGATAACACCCCAAATCTTATCTGTAAAATG
TAACAATCATGTGATATTTTCAAAGTTTCAAGAGGCTGGCGAGATGGCTCGGTTGTTGATTAGC
ACTAAATATCTTTCAGAGGACATGGGGGTTCTAGTCCCAGAACCCACATGGCAGCTCATGATTG
TATGTCACCCACAGTGCATCAGGCATGTGGTTTCTAAATATACACTGTTGAAGACATTTTGAGA
CTGAGACATATTAACTATGAGGGCTACAGGAGAACAGGGATCTTTAGTCTCACTTTCAGGATGA
TAGCATCTGCCATCTATCTTCAACAAGGAAGGGCTGAAGTAGAAGTTCAGTGATGTAAGGCTAT
TGGTACAACTACTTGAGAGCACTTATTCTGGAAAGAAGCCTCTTGCCAGCACAGGACTGTTGTA
AATACTGTAAAGTAAGCGTCAGTGCTTGCGGCCGGCTTTGGGAAGGGATTAAGACGTATCTATT
AGCTTTGTGAAGAGATACCCTCCCCTTACTATTTATAAACATTTCCAAGATAGGCTGTTGGTGA
GCTGTCTGTGCTAAGTGTCCACCACACGGATAGTGCTAACTCTCTGCTCTACCTCTCAGCTTTT
GTTTGAAATTGTTTTGTATAACTGTACATGTGTTAATAATCAAAATGTTGTTCTTTGCTATTTC
TGAAAACTGTGACCTTTGTTAATAAAGCACTGAAACCTCAGAATTTTATATATCA

hide sequence

RefSeq Acc Id:

XM_006233228 ⟹ XP_006233290

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	219,626,851 - 219,660,975 (+)	NCBI
Rnor_5.0	2	237,557,441 - 237,588,679 (-)	NCBI

Sequence:

show sequence

ACTGAGCTAAATCCCCAACCCCTGCATACTTATTCTTTAATTTTAAAATGTTGCCCATTTAAAC
TGATTTTAGAATGCGTATTTATCTAAAGCTGTTTAAACGTAGGGAAATGCTGGGCGTGGTGGAC
CATGCTTTGAATATCAGCACTGCGGAGGAAAGGCAGACAGAGCTTTTGAGCCAAAGACCAGCCA
GGGTAACCCTCAGGCCCTGTCTCAATAAAGACAGAAATCAAATACAGGAGAACGTATGACAGGA
ACAACGAGGCATGGTACTTTAACAATTTAGAATGGGTCATATTCCCTGGCTTTGCAACTTTTCA
AAAATGCTAGTTACTGTCTTTCAAGTTATATACATTTAATTATAGGCAACGGGTGGAAAGCAAG
AAAAACCAGTATTGGCATGCCTACCTTACAGACCCTATCAACACATGCACATGATGGCCCAATT
ATTAAAACCAGAGGCCAGTGGTTATGATTCTCAGTTCTTTCTATTAGCTGCTAACTCTATGTCT
ATGACCCAACACTAACACTCACTGCCTCATGTGAATAATAGTATATACTCCCTAAGTATAGACT
TACTATATCCCTATTAAATAGAATAATAGCATGATTTATTTCCTAAGGTTTGTGAAAATTGAAT
TTTTAAAAGAAAAGTAACAATGTTTAGTGCTAGCCATACAGCAAAAGCTGACCAAGTATTTACT
CTTATTTTTTCTCAATTATTTATTTCAATTTATTTCAGAATGTTCATGATGTTATGCACACTGA
ATTTTAGGGAAAGTTAAGAAATTCTCAGTATTAAGAATAACCTATATTATTTCTTCTTCACGTA
CAGATTTTAAAATTTAATTTCCAGTGTGATTGTTTGGTGTTGACCAGCTAGTTGGGAGGCTGAG
GCAGGAGAATTCCTGAGACCAGGTATTCAAGACCAACATGAGAAATTCAGTGAGATCACCATCT
CAAAGACAAACAGGAAAATTGTCTTTCAAGGGAAATAGTAATCTATTCTAGCTTGCAAAGCTAA
ATCGCAGAAAACACACACACACAGGCGCGAGCACACGCACGCGCGCGCGCGCACACACACACAC
ACAAAGCATTCTTAATTTAGAAACTGTTATAAAGATGTTTTCTTTTTTGGTGTAGAGGGTGGTG
AGACTTCCTGTGACCTGCGGATTAGTAATTTTCCTGTTCTCTATCCATTTGAAGCCCCTGACAT
TTTTGCACTTAGAACCAAAATGTCTTATGACATTAATGTCTGCTGGGGTTGGAAGACAAAAATG
CACTCTGCTTTCAACTTTTAATGTTAGTTACTTTAGGTTAATTCTTCTTCCCCCTCCCAGAATA
ATAATTACAAGCTCATAAGGTGTTTCCTGGAGAGTTAAGTCTAAACAAAAAACATTTTTTTTCT
AAGTTTCTTCCTCATGCACTCAAGTGGTTATCGTTCAGAAAACAATAAGTATAATTAGAACCCA
GTTAGTAAAGTCTGGTGATTTCAAACACTATTCTGTAAAGATAATCACTTCCCATGAGGATGGG
CGACTGATGGAAGGATGAGCACAAAGATCTCTATGATAGCACAGAGGATCATCTCTTGGCTATT
CTTAGCACTTAGTCCAAGAAAGCAATGTTCCTCAGGAGCTCATCGTGGCTCCAAGCGGTGGTCA
GAACTGCATTTACTTAAGTAAAGGCTGGAGAATCCATGGGGCAGAAGCAGAAACCTGTCAAAGG
GGGTGAGGATGGGTTCCAGCACCCACAGACCAGCAACTCAGTTCCGACTCTCAGGAAGGTAGGG
CGATACCAGACCTCCGCCGATCCAGCGTGTTCACCACAGAACCTTTTCCCCGCGGCCACCACCA
TCCTGCAGAAGCGCTTCTTCTTTTCCACAAAGTAGTTGCATCTACCGTCAGTTGGAAAACCGAT
CGCGGGCGTTGTCGGAGCAGGAGCCTCCATCACGCTGGGTCCTTTTGGCCTGGCTCAACCCAAA
GTTGTCAATTCCCTCTGGTCCCGCTTCCCTTAACAAACGTGGCCGCCTGAAGGGGGTGGGACCA
CGGAAATTACGCATCACCCTGACTTATTCGTTCCCTCAACCGGAAGAAAGTGATGGTGGCTGAA
GAGGTCCAAACCTCCTTCGTTCCCTCTGTTTATCGTTCCCCTCCTCCGCCGGAGCTGAGCGCCA
AACTCAAACTTAGTCTGGAGCAGTACTTCTTTTAAGCTGGTACCGCGGGCCAGGCCTACTGGGC
TTTTTCACTCACGGGTCGGGGCAGCGGTCCGACATGAGTCAAGTTCTGTTCCAGCAACTTGTTC
CCTTGCTAGTGAAATGCAAAGACTGCGAGGAGAGGAGAGGGAGCGTTAGAGTGAGCATTGAACT
ACAGTCACTGTCTAATCCAGTACACAGAAAGGATCTAGTCATCCGTCTGACTGATGATACAGAT
CCATTTTTTCTGTATAACCTTGTTATATCCGAGGAAGACTTTCAAAGTTTAAAATTGCAGCAAG
GTCTCCTGGTGGACTTCTTATCTTTTCCACAGAAGTTTATAGACCTCCTTCAGCAATGTATGCA
GGAGCATGTGAAAGAGACTCCAAGGTTTCTGCTGCAGCTCACGTCTTCAGCTGCTCTTTTGGAT
AACTCGCCGGTGTTTTTAAATGTAGTGGAGACAAATCCTTTTAAGCATCTTATTCACCTGTCAC
TAAAGCTTTTACCTGGAAATGATGTAGAAATAAAGAAATTTCTAGCAGGATGCTTGAAATGTAG
CAAGGAAGAAAAATTATCACTGACTAAATCACTAGATGATGTTACCAGGCAACTGCACATTACA
CAAGAGACACTCTCGGAAAAGATGCAGGAACTAGATAAGTTGCGGAGTGAGTGGGCCTCGCACA
CAGCAGCGCTGACCAATAAGCACTCCCAGGAGTTAACAAACGAGAAGGAGAAAGCCTTGCAGAC
ACAAGTTCAGTACCAACAGCAGCATGAACAACAGAAAAAGGATCTGGAAGCCCTCCATCAACGA
AATATCCACCAGCTACAAAACAGATTGTCTGAGTTAGAGGCAGCTAATAAAGAGCTCACCGAGA
GGAAGTATAAAGGAGACTCCACTGTCAGAGAACTAAAAGCGAAGCTTGCTGGTGTGGAAGAGGA
GCTGCAGCGGACCAAGCAAGAGGTCCTTTCTCTGAGAAGAGAGAATTGTACTCTGGATACTGAA
TGCCACGAGAAAGAAAAGCATATTAACCAGCTACAAACAAAAGTGGCCGTTTTAGAACAGGAGA
TCAAGGATAAAGACCAGCTTGTTCTGAGAACAAAAGAAGCATTCGATACAATCCAAGAGCAAAA
GGTGGCTTTAGAAGAAAATGGTGAGAAAAATCAGATACAATTGGGAAAACTTGAAGCTACAATA
AAATCATTATCAGCAGAACTTCTAAAGGCGAATGAGATTATCAAGAAGTTACAAGGAGATCTTA
AAACTCTGATGGGTAAATTGAAACTGAAGAATACAGTTACTATTCAGCAAGAAAAGCTATTGGC
TGAGAAAGAAGAAATGCTACAAAAGGAGCGAAAGGAATCACAGGATGCTGGGCAGTCTCTTCGG
GCCAAAGAGCAAGAGGTATGCAGATTACAAGAACAATTAGAAACTACAGTTCAGAAACTTGAAG
AAAGTAAACAACTTTTGAAAAATAATGAAAAATTAATCACATGGCTAAACAAAGAACTAAATGA
AAACCAGCTGGGAAGAAAGCAAGACACACTGGGGGCCTCTGCCACCCCACCCACACATTCTGCT
AGCAACACCGTCAGAAGTGGGCTTTCTCCCAGCCTGAATGTGGTTGATAGTAGACTAAATTACC
CAAGCTGTGGAATTGGCTATCCTGTCTCGTCTGCGTTCACATTCCAGAATGCTTTTCCTCATGC
AGTAGTTGCCAAAAACACCAGCCATCCAGTCTCTGGACCAAAGGTGCAGTTCAGCTTGCAGCTG
ACAAAGCAAAGCACGTCGTCGGGAGATGGGCAGCCGGGAGCGGCTGTTAACAGGTCTGCTTCAG
CTGACAAGGAGAAACCATCAGAAAGATGGCATGCTGGGAGCGCTGCAGACATCTTCCAAACCCA
CAGTCCTGCCCCCATCTTCATCGTATTTTCCTGGGCCATTACCAAGTAGTTAATCCGACACCTT
TCACTGCTTACTGACAGTTTAGAAACTCAAGTGACTTAACAGACCATTAATAACACCAGTCTTT
TCTTGTTCCTGTTAGGTCATTTGTATCCTTTATAATAGTGCTGCCATTGACAAACTTAGGACAT
TGATAAGGACTCTGAGTAAATGGTATTTTTTTCTGTGAGCACAACAGAATATTTAAAAAAAAAA
AAAGTCACTGAATTGTATCGGATTTTTACCAGTTGGTCTGAATAGGGACACTAAATCAAAGATA
AGCCTGCAGAGAATAGTAGTAACAAGCTGAAGAAGACTTGTGATTCATACTATCATTTCTGTTA
TTAAAAAATTATTAATTTGCCACCTGAGAGTTGGGAGGGCTTCCACCTGTGATCATTGGTCTTT
ACACTGAGTTAGTATACTACTTTCAAAGGGTTTTTTTGTTTGTTTTTCTTTGAGATAGGGTCTA
TTATGTAGTTCAGGCTGCAGAACATGCCATGTATGTAGACTAGGCTGGTCTGAAATCCAGATCC
GCCTGCCTCTGTCTCCCAACACCTGGTATGTACTACTGAGCCTGATTTACACAATGTATTTTGG
TTTATTCTTTCTCCTCTCAGGTGCTCTCCAATTTCCTACCCACCCAATTCCATATTTTCTCCCT
TAAAAAGAAAATTAAAATAACCAACCAGTAAGATAAAAATATCAAACCAAAACCAATGGATTTG
ACCTTGTGTTAGTCAACAACTCCTGGGTGTGGGTGTTTGGAATTTGGCTGATATACTCGATAGT
CTTAAGCACTTTGAGTGAAAGTTAAGTATTCGTAGTGAGCGGATTATTTTCTCTGACATGTTTG
ATCTATGAAATGATTTTATATAAAAATTGGGCAGTATATTTACATGACTGAAATGCTTTAGTCG
TCTGGGCTGAGCATAGTTGATTTTGACACTTCCATACAAGATCATCAGTGGAATAGCACCATAA
AAGTTTTTATAATATACTTTTACAATATTTGTGCTCAGTGTTAATAAAGCAGGCAAGTTAACTA
TTGGAAGTTACAACTTTCTCATTATTAAAAACTTCCAAGAATTATTCCTTGGAAATTAAGTAGT
TTCAAAAAACAAAACAAAACCAAAACTAACACTCAGTAATCTTAGAGGTCTAGTTTTGTTTTCT
TGTTGATAACACCCCAAATCTTATCTGTAAAATGTAACAATCATGTGATATTTTCAAAGTTTCA
AGAGGCTGGCGAGATGGCTCGGTTGTTGATTAGCACTAAATATCTTTCAGAGGACATGGGGGTT
CTAGTCCCAGAACCCACATGGCAGCTCATGATTGTATGTCACCCACAGTGCATCAGGCATGTGG
TTTCTAAATATACACTGTTGAAGACATTTTGAGACTGAGACATATTAACTATGAGGGCTACAGG
AGAACAGGGATCTTTAGTCTCACTTTCAGGATGATAGCATCTGCCATCTATCTTCAACAAGGAA
GGGCTGAAGTAGAAGTTCAGTGATGTAAGGCTATTGGTACAACTACTTGAGAGCACTTATTCTG
GAAAGAAGCCTCTTGCCAGCACAGGACTGTTGTAAATACTGTAAAGTAAGCGTCAGTGCTTGCG
GCCGGCTTTGGGAAGGGATTAAGACGTATCTATTAGCTTTGTGAAGAGATACCCTCCCCTTACT
ATTTATAAACATTTCCAAGATAGGCTGTTGGTGAGCTGTCTGTGCTAAGTGTCCACCACACGGA
TAGTGCTAACTCTCTGCTCTACCTCTCAGCTTTTGTTTGAAATTGTTTTGTATAACTGTACATG
TGTTAATAATCAAAATGTTGTTCTTTGCTATTTCTGAAAACTGTGACCTTTGTTAATAAAGCAC
TGAAACCTCAGAATTTTATATATCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101189	(Get FASTA)	NCBI Sequence Viewer
	XP_006233289	(Get FASTA)	NCBI Sequence Viewer
	XP_006233290	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL82037	(Get FASTA)	NCBI Sequence Viewer
	EDL82038	(Get FASTA)	NCBI Sequence Viewer
	EDL82039	(Get FASTA)	NCBI Sequence Viewer
	EDL82040	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101189 ⟸ NM_001107719

- UniProtKB:

D3ZVI7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQVLFQQLVPLLVKCKDCEERRGSVRVSIELQSLSNPVHRKDLVIRLTDDTDPFFLYNLVISE
EDFQSLKLQQGLLVDFLSFPQKFIDLLQQCMQEHVKETPRFLLQLTSSAALLDNSPVFLNVVET
NPFKHLIHLSLKLLPGNDVEIKKFLAGCLKCSKEEKLSLTKSLDDVTRQLHITQETLSEKMQEL
DKLRSEWASHTAALTNKHSQELTNEKEKALQTQVQYQQQHEQQKKDLEALHQRNIHQLQNRLSE
LEAANKELTERKYKGDSTVRELKAKLAGVEEELQRTKQEVLSLRRENCTLDTECHEKEKHINQL
QTKVAVLEQEIKDKDQLVLRTKEAFDTIQEQKVALEENGEKNQIQLGKLEATIKSLSAELLKAN
EIIKKLQGDLKTLMGKLKLKNTVTIQQEKLLAEKEEMLQKERKESQDAGQSLRAKEQEVCRLQE
QLETTVQKLEESKQLLKNNEKLITWLNKELNENQLGRKQDTLGASATPPTHSASNTVRSGLSPS
LNVVDSRLNYPSCGIGYPVSSAFTFQNAFPHAVVAKNTSHPVSGPKVDKYNVLDEY

hide sequence

RefSeq Acc Id:

XP_006233290 ⟸ XM_006233228

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSQVLFQQLVPLLVKCKDCEERRGSVRVSIELQSLSNPVHRKDLVIRLTDDTDPFFLYNLVISE
EDFQSLKLQQGLLVDFLSFPQKFIDLLQQCMQEHVKETPRFLLQLTSSAALLDNSPVFLNVVET
NPFKHLIHLSLKLLPGNDVEIKKFLAGCLKCSKEEKLSLTKSLDDVTRQLHITQETLSEKMQEL
DKLRSEWASHTAALTNKHSQELTNEKEKALQTQVQYQQQHEQQKKDLEALHQRNIHQLQNRLSE
LEAANKELTERKYKGDSTVRELKAKLAGVEEELQRTKQEVLSLRRENCTLDTECHEKEKHINQL
QTKVAVLEQEIKDKDQLVLRTKEAFDTIQEQKVALEENGEKNQIQLGKLEATIKSLSAELLKAN
EIIKKLQGDLKTLMGKLKLKNTVTIQQEKLLAEKEEMLQKERKESQDAGQSLRAKEQEVCRLQE
QLETTVQKLEESKQLLKNNEKLITWLNKELNENQLGRKQDTLGASATPPTHSASNTVRSGLSPS
LNVVDSRLNYPSCGIGYPVSSAFTFQNAFPHAVVAKNTSHPVSGPKVQFSLQLTKQSTSSGDGQ
PGAAVNRSASADKEKPSERWHAGSAADIFQTHSPAPIFIVFSWAITK

hide sequence

RefSeq Acc Id:

XP_006233289 ⟸ XM_006233227

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSQVLFQQLVPLLVKCKDCEERRGSVRVSIELQSLSNPVHRKDLVIRLTDDTDPFFLYNLVISE
EDFQSLKLQQGLLVDFLSFPQKFIDLLQQCMQEHVKETPRFLLQLTSSAALLDNSPVFLNVVET
NPFKHLIHLSLKLLPGNDVEIKKFLAGCLKCSKEEKLSLTKSLDDVTRQLHITQETLSEKMQEL
DKLRSEWASHTAALTNKHSQELTNEKEKALQTQVQYQQQHEQQKKDLEALHQRNIHQLQNRLSE
LEAANKELTERKYKGDSTVRELKAKLAGVEEELQRTKQEVLSLRRENCTLDTECHEKEKHINQL
QTKVAVLEQEIKDKDQLVLRTKEAFDTIQEQKVALEENGEKNQIQLGKLEATIKSLSAELLKAN
EIIKKLQGDLKTLMGKLKLKNTVTIQQEKLLAEKEEMLQKERKESQDAGQSLRAKEQEVCRLQE
QLETTVQKLEESKQLLKNNEKLITWLNKELNENQLGRKQDTLGASATPPTHSASNTVRSGLSPS
LNVVDSRLNYPSCGIGYPVSSAFTFQNAFPHAVVAKNTSHPVSGPKVQFSLQLTKQSTSSGDGQ
PGAAVNRSASADKENGENLGLESKYLKKREDSIPLRGLSQNLFSNSDHQKDGMLGALQTSSKPT
VLPPSSSYFPGPLPSS

hide sequence

RefSeq Acc Id:

ENSRNOP00000063437 ⟸ ENSRNOT00000067324

Protein Domains

SAS-6_N Sas6_CC

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306255	AgrOrtholog
Ensembl Genes	ENSRNOG00000015211	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000063437	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067324	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	2.170.210.20	UniProtKB/TrEMBL
InterPro	SAS-6_N	UniProtKB/TrEMBL
	SAS-6_N_sf	UniProtKB/TrEMBL
	SAS6_CC	UniProtKB/TrEMBL
KEGG Report	rno:310807	UniProtKB/TrEMBL
NCBI Gene	310807	ENTREZGENE
Pfam	SAS-6_N	UniProtKB/TrEMBL
	Sas6_CC	UniProtKB/TrEMBL
PhenoGen	Sass6	PhenoGen
UniGene	Rn.229639	ENTREZGENE
UniProt	D3ZVI7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-06-26	Sass6	SAS-6 centriolar assembly protein	Sass6	spindle assembly 6 homolog (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Sass6	spindle assembly 6 homolog (C. elegans)	Sass6_predicted	spindle assembly 6 homolog (C. elegans) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Sass6_predicted	spindle assembly 6 homolog (C. elegans) (predicted)	RGD1306255_predicted	similar to 2810453L12Rik protein (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306255_predicted	similar to 2810453L12Rik protein (predicted)	LOC310807_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC310807_predicted	similar to 2810453L12Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM