Cd53 (Cd53 molecule) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cd53 (Cd53 molecule) Rattus norvegicus
Analyze
Symbol: Cd53
Name: Cd53 molecule
RGD ID: 2310
Description: Predicted to enable identical protein binding activity and protein-membrane adaptor activity. Predicted to be involved in positive regulation of myoblast fusion and receptor clustering. Located in cell surface. Orthologous to human CD53 (CD53 molecule); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD53 antigen; cell surface glycoprotein CD53; leukocyte antigen (Ox-44); leukocyte antigen MRC OX-44; leukocyte surface antigen CD53; LOC100363255; Ox-44; OX44; RATOX44
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Cia10
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,040,369 - 197,087,925 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2197,040,369 - 197,218,593 (-)EnsemblGRCr8
mRatBN7.22194,352,139 - 194,399,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2194,352,139 - 194,399,657 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2201,985,357 - 202,031,562 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02199,865,663 - 199,913,115 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02194,682,627 - 194,730,079 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2196,665,336 - 196,717,899 (-)NCBI
Lyon_Normotensive2196,904,513 - 196,957,076 (-)NCBI
Lyon_Hypertensive2196,511,320 - 196,563,914 (-)NCBI
F344_StmMcwi2196,623,040 - 196,675,636 (-)NCBI
Rnor_6.02209,489,279 - 209,537,098 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2209,489,279 - 209,537,087 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.02228,956,378 - 229,004,197 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42202,186,125 - 202,234,570 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2187,021,863 - 187,068,114 (-)NCBICelera
RGSC_v3.12202,148,878 - 202,197,324 (-)NCBI
RH 3.4 Map21352.8RGD
Cytogenetic Map2q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acetamiprid  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (EXP,ISO)
dioxygen  (EXP)
diquat  (ISO)
disodium selenite  (ISO)
diuron  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
fonofos  (ISO)
fructose  (ISO)
gentamycin  (EXP)
glucose  (ISO)
imidacloprid  (ISO)
L-methionine  (ISO)
methylarsonic acid  (ISO)
N-nitrosodimethylamine  (EXP)
nitroglycerin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
parathion  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium lactate  (ISO)
Soman  (EXP)
streptozocin  (EXP)
tamibarotene  (ISO)
tamoxifen  (ISO)
terbufos  (ISO)
testosterone  (EXP)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiophenes  (ISO)
titanium dioxide  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
undecane  (EXP)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
anchoring junction  (IEA,ISO)
cell surface  (IDA)
cell-cell junction  (ISO,ISS)
immunological synapse  (ISO)
membrane  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO,ISS)
synapse  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The rat leukocyte antigen MRC OX-44 is a member of a new family of cell surface proteins which appear to be involved in growth regulation. Bellacosa A, etal., Mol Cell Biol 1991 May;11(5):2864-72.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Mapping autoimmunity genes. Griffiths MM, etal., Curr Opin Immunol. 1999 Dec;11(6):689-700.
5. Identification of a new non-major histocompatibility complex genetic locus on chromosome 2 that controls disease severity in collagen-induced arthritis in rats. Gulko PS, etal., Arthritis Rheum 1998 Dec;41(12):2122-31
6. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
13. Localization in rats of genetic loci regulating susceptibility to experimental erosive arthritis and related autoimmune diseases. Wilder RL, etal., Transplant Proc 1999 May;31(3):1585-8
14. Apoptosis protection and survival signal by the CD53 tetraspanin antigen. Yunta M and Lazo PA, Oncogene 2003 Feb 27;22(8):1219-24.
Additional References at PubMed
PMID:2466944   PMID:12631118   PMID:15489334   PMID:20458337   PMID:21930792   PMID:22847234   PMID:24832104  


Genomics

Comparative Map Data
Cd53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,040,369 - 197,087,925 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2197,040,369 - 197,218,593 (-)EnsemblGRCr8
mRatBN7.22194,352,139 - 194,399,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2194,352,139 - 194,399,657 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2201,985,357 - 202,031,562 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02199,865,663 - 199,913,115 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02194,682,627 - 194,730,079 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2196,665,336 - 196,717,899 (-)NCBI
Lyon_Normotensive2196,904,513 - 196,957,076 (-)NCBI
Lyon_Hypertensive2196,511,320 - 196,563,914 (-)NCBI
F344_StmMcwi2196,623,040 - 196,675,636 (-)NCBI
Rnor_6.02209,489,279 - 209,537,098 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2209,489,279 - 209,537,087 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.02228,956,378 - 229,004,197 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42202,186,125 - 202,234,570 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2187,021,863 - 187,068,114 (-)NCBICelera
RGSC_v3.12202,148,878 - 202,197,324 (-)NCBI
RH 3.4 Map21352.8RGD
Cytogenetic Map2q34NCBI
CD53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,871,210 - 110,899,922 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,871,170 - 110,899,936 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371111,413,832 - 111,442,544 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361111,215,344 - 111,244,081 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341111,127,814 - 111,234,716NCBI
Celera1109,660,823 - 109,689,572 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1109,285,008 - 109,313,782 (+)NCBIHuRef
CHM1_11111,528,958 - 111,557,705 (+)NCBICHM1_1
T2T-CHM13v2.01110,885,966 - 110,914,720 (+)NCBIT2T-CHM13v2.0
Cd53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393106,666,177 - 106,697,465 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3106,666,177 - 106,697,530 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383106,758,861 - 106,790,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3106,759,921 - 106,790,149 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv373106,561,779 - 106,593,067 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363106,887,989 - 106,918,107 (-)NCBIMGSCv36mm8
Celera3109,088,034 - 109,119,379 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.53NCBI
Cd53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543514,388,726 - 14,413,249 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495543514,388,925 - 14,410,543 (+)NCBIChiLan1.0ChiLan1.0
CD53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,142,917 - 116,172,063 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11115,291,592 - 115,320,348 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01113,517,715 - 113,546,466 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11126,799,910 - 126,828,671 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1126,799,910 - 126,826,714 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
CD53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,070,132 - 41,089,329 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,070,788 - 41,089,221 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha643,847,669 - 43,866,859 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0641,401,987 - 41,421,177 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl641,401,991 - 41,421,159 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1641,122,453 - 41,141,639 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0641,092,762 - 41,111,952 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0641,528,153 - 41,547,338 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cd53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap111103,974,709 - 103,997,100 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440505817,828,648 - 17,850,910 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367042,262,945 - 2,285,631 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367042,263,248 - 2,285,625 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4109,306,555 - 109,335,802 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.14109,306,552 - 109,335,876 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24119,674,096 - 119,703,422 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12025,662,425 - 25,691,302 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366603835,778,039 - 35,806,921 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.12022,653,361 - 22,687,172 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2022,652,819 - 22,685,287 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Cd53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247726,630,152 - 6,660,871 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247726,630,123 - 6,661,599 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl1916,263,040 - 16,497,345 (-)Ensembl
Cd53
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1351,318,031 - 51,461,652 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Cd53
522 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:84
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000024344
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2191709311217961898Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2192287802229609668Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2191709311217961898Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2192287802221089121Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat

Markers in Region
D2Wox27  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82197,040,544 - 197,040,759 (+)Marker Load Pipeline
mRatBN7.22194,352,314 - 194,352,529 (+)MAPPERmRatBN7.2
Rnor_6.02209,489,455 - 209,489,669NCBIRnor6.0
Rnor_5.02228,956,554 - 228,956,768UniSTSRnor5.0
RGSC_v3.42202,186,267 - 202,186,482RGDRGSC3.4
RGSC_v3.42202,186,268 - 202,186,482UniSTSRGSC3.4
Celera2187,022,039 - 187,022,250UniSTS
RGSC_v3.12202,149,021 - 202,149,236RGD
RH 2.0 Map21019.2RGD
Cytogenetic Map2q34-q41UniSTS
D2Arb17  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82197,040,470 - 197,040,818 (+)Marker Load Pipeline
mRatBN7.22194,352,240 - 194,352,588 (+)MAPPERmRatBN7.2
Rnor_6.02209,489,381 - 209,489,728NCBIRnor6.0
Rnor_5.02228,956,480 - 228,956,827UniSTSRnor5.0
RGSC_v3.42202,186,193 - 202,186,541RGDRGSC3.4
RGSC_v3.42202,186,194 - 202,186,541UniSTSRGSC3.4
Celera2187,021,965 - 187,022,309UniSTS
RGSC_v3.12202,148,947 - 202,149,295RGD
FHH x ACI Map288.7399UniSTS
FHH x ACI Map288.7399RGD
Cytogenetic Map2q34-q41UniSTS
RH94570  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22194,352,552 - 194,352,742 (+)MAPPERmRatBN7.2
Rnor_6.02209,489,693 - 209,489,882NCBIRnor6.0
Rnor_5.02228,956,792 - 228,956,981UniSTSRnor5.0
RGSC_v3.42202,186,506 - 202,186,695UniSTSRGSC3.4
Celera2187,022,274 - 187,022,463UniSTS
RH 3.4 Map21352.8UniSTS
Cytogenetic Map2q34-q41UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
276 156 730 1582 4031 1009 1726 130 872 496 854 150 5367 2586 449 3945 38 1376 737 909 155 153

Sequence


Ensembl Acc Id: ENSRNOT00000024344   ⟹   ENSRNOP00000024344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2197,040,369 - 197,087,885 (-)Ensembl
mRatBN7.2 Ensembl2194,352,139 - 194,399,657 (-)Ensembl
Rnor_6.0 Ensembl2209,489,279 - 209,537,087 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144837   ⟹   ENSRNOP00000103208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2197,040,369 - 197,166,720 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147382   ⟹   ENSRNOP00000108222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2197,040,369 - 197,218,593 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000165813   ⟹   ENSRNOP00000104870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2197,040,369 - 197,218,593 (-)Ensembl
RefSeq Acc Id: NM_012523   ⟹   NP_036655
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82197,040,369 - 197,087,896 (-)NCBI
mRatBN7.22194,352,139 - 194,399,668 (-)NCBI
Dahl_SR_JrHsd2196,665,336 - 196,717,899 (-)NCBI
Lyon_Normotensive2196,904,513 - 196,957,076 (-)NCBI
Lyon_Hypertensive2196,511,320 - 196,563,914 (-)NCBI
F344_StmMcwi2196,623,040 - 196,675,636 (-)NCBI
Rnor_6.02209,489,279 - 209,537,098 (-)NCBI
Rnor_5.02228,956,378 - 229,004,197 (-)NCBI
RGSC_v3.42202,186,125 - 202,234,570 (-)RGD
Celera2187,021,863 - 187,068,114 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101709   ⟹   XP_038957637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82197,040,369 - 197,057,186 (-)NCBI
mRatBN7.22194,352,139 - 194,368,952 (-)NCBI
RefSeq Acc Id: XR_010063581
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82197,043,355 - 197,087,925 (-)NCBI
RefSeq Acc Id: NP_036655   ⟸   NM_012523
- UniProtKB: P24485 (UniProtKB/Swiss-Prot),   A0ABK0LC03 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024344   ⟸   ENSRNOT00000024344
RefSeq Acc Id: XP_038957637   ⟸   XM_039101709
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000104870   ⟸   ENSRNOT00000165813
Ensembl Acc Id: ENSRNOP00000103208   ⟸   ENSRNOT00000144837
Ensembl Acc Id: ENSRNOP00000108222   ⟸   ENSRNOT00000147382

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P24485-F1-model_v2 AlphaFold P24485 1-219 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691655
Promoter ID:EPDNEW_R2180
Type:initiation region
Name:Cd53_1
Description:Cd53 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02209,537,067 - 209,537,127EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2310 AgrOrtholog
BioCyc Gene G2FUF-51696 BioCyc
Ensembl Genes ENSRNOG00000017874 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055019729 UniProtKB/Swiss-Prot
  ENSRNOG00060029369 UniProtKB/Swiss-Prot
  ENSRNOG00065022882 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000024344 ENTREZGENE
  ENSRNOT00000024344.6 UniProtKB/Swiss-Prot
  ENSRNOT00055033666 UniProtKB/Swiss-Prot
  ENSRNOT00060050977 UniProtKB/Swiss-Prot
  ENSRNOT00065039104 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1450.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7130719 IMAGE-MGC_LOAD
InterPro Tetraspanin UniProtKB/Swiss-Prot
  Tetraspanin/Peripherin UniProtKB/Swiss-Prot
  Tetraspanin_CS UniProtKB/Swiss-Prot
  Tetraspanin_EC2_sf UniProtKB/Swiss-Prot
KEGG Report rno:24251 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93640 IMAGE-MGC_LOAD
NCBI Gene 24251 ENTREZGENE
PANTHER LEUKOCYTE SURFACE ANTIGEN CD53 UniProtKB/Swiss-Prot
  PTHR19282 UniProtKB/Swiss-Prot
Pfam Tetraspanin UniProtKB/Swiss-Prot
PhenoGen Cd53 PhenoGen
PIRSF Tetraspanin UniProtKB/Swiss-Prot
PRINTS TMFOUR UniProtKB/Swiss-Prot
PROSITE TM4_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017874 RatGTEx
  ENSRNOG00055019729 RatGTEx
  ENSRNOG00060029369 RatGTEx
  ENSRNOG00065022882 RatGTEx
Superfamily-SCOP SSF48652 UniProtKB/Swiss-Prot
TIGR TC219523
UniProt A0ABK0LC03 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LCP5_RAT UniProtKB/TrEMBL
  A0ABK0LJ22_RAT UniProtKB/TrEMBL
  CD53_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-29 Cd53  Cd53 molecule  LOC100363255  CD53 antigen  Data merged from RGD:2323385 737654 PROVISIONAL
2010-05-06 LOC100363255  CD53 antigen      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-29 Cd53  Cd53 molecule  Cd53  CD53 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Cd53  CD53 antigen      Symbol and Name status set to approved 70586 APPROVED
2001-07-23 Cd53  Leukocyte antigen (Ox-44)      Name withdrawn 67952 WITHDRAWN
2001-07-23 Cd53  CD53 antigen      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains four potential transmembrane regions and three potential glycosylation sites 69803
gene_process activation reduces the number of cells that enter apoptosis in tumor cells 727579