Bp74 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bp74 (Blood pressure QTL 74) Rattus norvegicus

Symbol: Bp74
Name: Blood pressure QTL 74
RGD ID: 631522
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 0.05
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82175,008,837 - 220,008,837RGD_MAPPER_PIPELINE
mRatBN7.22172,710,921 - 184,114,403RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02186,611,811 - 198,704,485RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02206,015,127 - 218,191,419RGDRnor5.0
RGSC_v3.42179,302,449 - 191,378,271RGDRGSC3.4
RGSC_v3.12179,252,555 - 191,341,025RGD
Cross Type: intercross
Strains Crossed: SS.WKY-(D2Mgh8-D2Mgh9)/Mco 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp74Rathypertension  IDA 70380 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp74Ratincreased systemic arterial blood pressure  QTM 70380 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp74Ratsystolic blood pressure  IDA 70380 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp74Ratcontrolled sodium content diet  IDA 70380 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp74Rattail cuff plethysmography  IDA 70380 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp74RatSS.WKY-(D2Mgh8-D2Mgh9)/Mco  IEA 70380 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp74Ratarterial blood pressure trait  IDA 70380 RGD 


#
Reference Title
Reference Citation
1. Multiple blood pressure QTL on rat Chromosome 2 defined by congenic Dahl rats. Garrett MR and Rapp JP, Mamm Genome 2002 Jan;13(1):41-4.


1 to 20 of 428 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1592018Elp4-ps1elongator acetyltransferase complex subunit 4, pseudogene 12172729315172730773Rat
1308526Cd5lCd5 molecule-like2172791007172802018Rat
1589411Fcrl1Fc receptor-like 12172809442172829780Rat
11443353LOC108350053uncharacterized LOC1083500532172855048172864878Rat
1589379Fcrl5Fc receptor-like 52172881763172912912Rat
1311577Etv3ETS variant transcription factor 32172965461172980320Rat
1562620Etv3lETS variant transcription factor 3 like2172991616173004424Rat
2319935Cbx3-ps4chromobox 3, pseudogene 42173015332173016627Rat
1563314Pgam1-ps9phosphoglycerate mutase 1, pseudogene 92173024917173026131Rat
1588194Hnrnpf-ps2heterogeneous nuclear ribonucleoprotein F, pseudogene 22173029634173030956Rat
41353053LOC120101281small nucleolar RNA SNORA172173043652173043778Rat
7594981LOC102546356uncharacterized LOC1025463562173067942173074291Rat
619705Arhgef11Rho guanine nucleotide exchange factor 112173074383173195962Rat
1309453Lrrc71leucine rich repeat containing 712173194792173207448Rat
1305653Pear1platelet endothelial aggregation receptor 12173206298173234106Rat
620144Ntrk1neurotrophic receptor tyrosine kinase 12173236961173253806Rat
67399Insrrinsulin receptor-related receptor2173255335173274800Rat
1303076Sh2d2aSH2 domain containing 2A2173312253173318810Rat
1309037Prccproline rich mitotic checkpoint control factor2173326261173351799Rat
70961Hdgfheparin binding growth factor2173370147173379756Rat

1 to 20 of 428 rows
1 to 20 of 405 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10814D5Mgh71442173254996173255140Ratregion
11006D2Wox243032175947534175947839Ratregion
11047D2Mit132092176092339176092546Ratregion
11048D2Wox23952176091092176091187Ratregion
11108D2Wox191322174540761174540907Ratregion
11109D2Wox201762174541858174542034Ratregion
11110D2Wox211712174540754174540927Ratregion
11111D2Wox221522174541843174541995Ratregion
11112D2Arb151992174546281174546480Ratregion
33864D2Mit252492174928764174929013Ratregion
33866D2Mit221712179953589179953760Ratregion
34234D2Mgh91292184114274184114403Ratregion
34292D2Mgh81082172710921172711029Ratregion
34693D2Mgh281432174546354174546494Ratregion
36091D2Rat441372174930955174931092Ratregion
36163D2Rat421272174110900174111027Ratregion
37422D2Rat1082482178023621178023871Ratregion
37630D2Rat1102282176150360176150588Ratregion
37672D2Rat872612182042106182042367Ratregion
39772D2Rat2311402183048491183048631Ratregion
1 to 20 of 405 rows

Flank 1: (D2Mgh8)
Rat AssemblyChrPosition (strand)Source
GRCr82175,008,837 - 175,008,945 (+)Marker Load Pipeline
mRatBN7.22172,710,921 - 172,711,029 (+)MAPPER
Rnor_6.02186,611,811 - 186,611,918NCBI
Rnor_5.02206,015,127 - 206,015,234UniSTS
RGSC_v3.42179,302,449 - 179,302,557RGD
RGSC_v3.42179,302,450 - 179,302,557UniSTS
RGSC_v3.12179,252,555 - 179,252,663RGD
Celera2166,665,366 - 166,665,473UniSTS
RH 3.4 Map21138.2UniSTS
RH 3.4 Map21138.2RGD
SHRSP x BN Map271.9698UniSTS
SHRSP x BN Map271.9698RGD
FHH x ACI Map276.5599RGD
Cytogenetic Map2 RGD
Flank 2: (D2Mgh9)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22184,114,274 - 184,114,403 (+)MAPPER
Rnor_6.02198,704,357 - 198,704,485NCBI
Rnor_5.02218,191,291 - 218,191,419UniSTS
RGSC_v3.42191,378,142 - 191,378,271RGD
RGSC_v3.42191,378,143 - 191,378,271UniSTS
RGSC_v3.12191,340,897 - 191,341,025RGD
Celera2176,639,495 - 176,639,623UniSTS
RH 3.4 Map21239.5UniSTS
RH 3.4 Map21239.5RGD
RH 2.0 Map2926.2RGD
SHRSP x BN Map270.0198RGD
Cytogenetic Map2q34UniSTS


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
61457Niddm8Non-insulin dependent diabetes mellitus QTL 84.10.01blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2174543008175950118Rat

1 to 10 of 84 rows


Database
Acc Id
Source(s)
NCBI Gene Bp74

Note Type Note Reference
qtl_cross_type intercross  
qtl_general associates with decreased blood pressure 70380