Mef2d (myocyte enhancer factor 2D)

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Gene: Mef2d (myocyte enhancer factor 2D) Rattus norvegicus

Analyze

Symbol:

Mef2d

Name:

myocyte enhancer factor 2D

RGD ID:

621489

Description:

Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; histone deacetylase binding activity; and protein dimerization activity. Involved in positive regulation of transcription, DNA-templated. Located in nucleus. Orthologous to human MEF2D (myocyte enhancer factor 2D); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

MGC93400; myocyte-specific enhancer factor 2D

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MEF2D (myocyte enhancer factor 2D)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Mef2d (myocyte enhancer factor 2D)	HGNC	EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mef2d (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MEF2D (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MEF2D (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mef2d (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MEF2D (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MEF2D (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mef2d (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MEF2D (myocyte enhancer factor 2D)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Mef2d (myocyte enhancer factor 2D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Mef2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	RLM1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	mef-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	173,606,490 - 173,634,457 (+)	Ensembl
Rnor_6.0	2	187,511,775 - 187,541,285 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	187,512,164 - 187,538,026 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	180,221,078 - 180,246,917 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	180,171,183 - 180,197,019 (+)	NCBI
Celera	2	167,553,069 - 167,578,692 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

migraine without aura (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2-butoxyethanol (ISO)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (EXP)

5-azacytidine (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP,ISO)

aristolochic acid (ISO)

arsenite(3-) (ISO)

aspartame (ISO)

atorvastatin calcium (EXP)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

cocaine (EXP,ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dicrotophos (ISO)

diethylstilbestrol (EXP)

doxorubicin (ISO)

ethanol (ISO)

fenvalerate (EXP)

fluoranthene (ISO)

folic acid (ISO)

gentamycin (EXP)

leflunomide (ISO)

mercury dichloride (EXP)

metformin (ISO)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

N-methyl-4-phenylpyridinium (ISO)

nitrofen (EXP)

palbociclib (ISO)

paracetamol (ISO)

pirinixic acid (EXP,ISO)

rotenone (ISO)

silver atom (ISO)

silver(0) (ISO)

temozolomide (ISO)

tremolite asbestos (ISO)

troglitazone (ISO)

tungsten (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult heart development (IEA,ISO)

apoptotic process (IEA)

cell differentiation (IBA)

chondrocyte differentiation (IEA,ISO)

endochondral ossification (IEA,ISO)

nervous system development (IEA)

osteoblast differentiation (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

positive regulation of transcription, DNA-templated (IMP,ISO)

positive regulation of vascular associated smooth muscle cell proliferation (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

regulation of transcription, DNA-templated (ISO)

skeletal muscle cell differentiation (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

intracellular membrane-bounded organelle (ISO)

nucleoplasm (IEA,ISO)

nucleus (IDA,ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,ISO)

DNA-binding transcription factor binding (IEA,ISO)

enzyme binding (ISO)

histone deacetylase binding (IEA,ISO)

protein binding (IPI,ISO)

protein heterodimerization activity (IEA,ISO)

protein homodimerization activity (IEA,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA,ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Hata Y and Sudhof TC, J Biol Chem 1995 Jun 2;270(22):13022-8.
4.	Leupin O, etal., J Bone Miner Res. 2007 Dec;22(12):1957-67.
5.	MGD data from the GO Consortium
6.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	RGD automated data pipeline
8.	RGD automated import pipeline for gene-chemical interactions
9.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10.	Yang CC, etal., Nucleic Acids Res 1998 Oct 15;26(20):4771-7.

Additional References at PubMed

PMID:7760790	PMID:8900141	PMID:9738004	PMID:9858528	PMID:10458488	PMID:12061776	PMID:12130539	PMID:15014501	PMID:15024082	PMID:15480995	PMID:15491989	PMID:15610731
PMID:15735306	PMID:15737621	PMID:16024167	PMID:16112871	PMID:16484497	PMID:16870618	PMID:17158926	PMID:17336904	PMID:17945419	PMID:18093911	PMID:19683055	PMID:19801631
PMID:20363751	PMID:20399744	PMID:20590529	PMID:20816781	PMID:20833138	PMID:21057871	PMID:22147266	PMID:22215669	PMID:22357862	PMID:25931508	PMID:26294766	PMID:28473466
PMID:28807675	PMID:29118903	PMID:30523159

Genomics

Comparative Map Data

Mef2d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	173,606,490 - 173,634,457 (+)	Ensembl
Rnor_6.0	2	187,511,775 - 187,541,285 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	187,512,164 - 187,538,026 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	180,221,078 - 180,246,917 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	180,171,183 - 180,197,019 (+)	NCBI
Celera	2	167,553,069 - 167,578,692 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

MEF2D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	156,463,727 - 156,500,779 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	156,463,727 - 156,500,840 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	156,433,519 - 156,470,567 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	154,700,143 - 154,737,153 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	153,246,591 - 153,283,602	NCBI
Celera	1	129,506,529 - 129,543,551 (-)	NCBI
Cytogenetic Map	1	q22	NCBI
HuRef	1	127,793,584 - 127,830,590 (-)	NCBI		HuRef
CHM1_1	1	157,829,813 - 157,866,945 (-)	NCBI		CHM1_1

Mef2d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	88,049,248 - 88,079,398 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	3	88,049,679 - 88,079,393 (+)	Ensembl
GRCm38	3	88,141,941 - 88,172,091 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	88,142,372 - 88,172,086 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	87,946,317 - 87,973,089 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	88,228,354 - 88,254,650 (+)	NCBI			mm8
Celera	3	88,181,996 - 88,208,762 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	38.78	NCBI

Mef2d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	2,569,399 - 2,602,579 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	2,569,399 - 2,602,580 (-)	NCBI	ChiLan1.0	ChiLan1.0

MEF2D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	135,637,823 - 135,664,623 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	135,637,801 - 135,653,866 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	131,806,705 - 131,844,420 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MEF2D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	41,455,771 - 41,473,807 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	41,458,514 - 41,470,197 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	40,929,884 - 40,960,479 (+)	NCBI
ROS_Cfam_1.0	7	41,306,586 - 41,337,187 (+)	NCBI
UMICH_Zoey_3.1	7	41,088,046 - 41,118,654 (+)	NCBI
UNSW_CanFamBas_1.0	7	41,141,343 - 41,171,916 (+)	NCBI
UU_Cfam_GSD_1.0	7	41,425,048 - 41,455,649 (+)	NCBI

Mef2d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	26,629,915 - 26,652,822 (-)	NCBI
SpeTri2.0	NW_004936580	5,660,306 - 5,685,333 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MEF2D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	93,581,598 - 93,651,639 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	93,581,563 - 93,616,980 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	102,218,116 - 102,236,160 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MEF2D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	7,358,647 - 7,394,068 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	20	7,358,653 - 7,396,972 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666038	6,659,027 - 6,694,456 (+)	NCBI	Vero_WHO_p1.0

Mef2d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624885	1,685,423 - 1,714,462 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D1S262E

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	173,625,227 - 173,625,339 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	187,530,893 - 187,531,004	NCBI	Rnor6.0
Rnor_5.0	2	206,933,910 - 206,934,021	UniSTS	Rnor5.0
RGSC_v3.4	2	180,239,783 - 180,239,894	UniSTS	RGSC3.4
Celera	2	167,571,558 - 167,571,669	UniSTS
Cytogenetic Map	2	q34	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
61473	Bp19	Blood pressure QTL 19	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	175950118	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	175950118	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
7488904	Bp363	Blood pressure QTL 363		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	172982062	175950118	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	152413072	175950118	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	175950118	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	175950118	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	175950118	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	175950118	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	44
Count of miRNA genes:	40
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000051394
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	40	24	19	24	8	11	74	32	38	11	8
Low			17	17		17				3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_030860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ005425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000051394 ⟹ ENSRNOP00000041061

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	173,606,490 - 173,632,361 (+)	Ensembl
Rnor_6.0 Ensembl	2	187,512,164 - 187,538,026 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099885 ⟹ ENSRNOP00000095486

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	173,606,490 - 173,632,361 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117239 ⟹ ENSRNOP00000092351

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	173,606,490 - 173,634,457 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117311 ⟹ ENSRNOP00000079168

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	173,606,490 - 173,634,457 (+)	Ensembl

RefSeq Acc Id:

NM_030860 ⟹ NP_110487

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,490 - 173,632,362 (+)	NCBI
Rnor_6.0	2	187,512,164 - 187,538,027 (+)	NCBI
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI
RGSC_v3.4	2	180,221,078 - 180,246,917 (+)	RGD
Celera	2	167,553,069 - 167,578,692 (+)	RGD

Sequence:

show sequence

CCTTCTATCTCGCAAGCTAGGCTGCGCTGTGCCTACGTCGGCCTCGAGTCTGGGGCTGGAGGAG
TTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCGAGGCGGCTTGGGC
GCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGGGGTCCCGGCCCTG
TGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGAGCTGCGGCTTCGC
GCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCCCGTTCCCCCACGG
GCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGACATTCATGA
GCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAAGGACCCCTG
GAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACCGCCAGGTGA
CATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCTGTGCGACTG
TGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGCACCGACATG
GACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCAATGCTGACA
TCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGCCGGATGGGGAGGA
CTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGAGGAACTGGATGGG
CTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCACAGTGCCCG
TGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCCTTCCCTGGT
GACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAGAGAAACAGT
GTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAGACCTCAACA
GTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGCTTCCCCCGG
CCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCTCCACCCCCA
CCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCATCACTTCCC
AGGGAGGCAAAGGGTTAATGCATCATTTGAACAATGCCCAGCGCCTTGGGGTCTCCCAGTCTAC
CCACTCGCTCACCACCCCAGTGGTTTCCGTGGCAACACCAAGTTTACTCAGCCAGGGCCTCCCC
TTCTCCTCCATGCCCACTGCCTACAACACAGATTACCAGCTGCCCAGTGCAGAGCTTTCCTCCT
TACCAGCCTTCAGCTCACCTGCAGGGCTGGCACTAGGCAACGTCACCGCCTGGCAGCAGCCCCA
GCAGCCCCAGCAGCCACAACCACCACAACCGCCACAGTCACAGCCACAGCCACCACAGCCACAG
CCACAGCAGCCACCTCAGCAACAGCCCCACTTGGTCCCTGTTTCTCTCAGCAACCTCATCCCTG
GCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCACTGTCACTACCCACCCCCACATCAGCATCAA
GTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCCCTGCACCTCCTCCACCAGCTGTGTTCCCA
GCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCAGCCCAGCTGGAGGATCCTATGAGACCGGGG
ACCGGGATGATGGACGGGGGGACTTTGGGCCCACACTAGGCCTGCTGCGCCCAGCCCCAGAGCC
TGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGGCTGGATACTTGGACATTAAAGTGATGGTTC
CCACTCCCATCTCTCAGCCTCCCTGATGAAGAGTTGACAATCTCACCGCCCACCCCTCCCTGTC
CTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCTTCTGCTCCATGTCCTGTTGATGGTTACATT
TGTGTATAATTATATTATTATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232771 ⟹ XP_006232833

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,607,114 - 173,635,620 (+)	NCBI
Rnor_6.0	2	187,512,497 - 187,541,285 (+)	NCBI
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI

Sequence:

show sequence

GACGCGCGTCGGCCCCTTTAAGAGCCCCTCCCCCATGCCGCGCGGCCGGGCGCAGGGTGGTCTG
GAGCGCGAGGGGTGTACGGGCGCCCTGGCATAAGCGTCCCGGGCCGAGCGGGGCGGCGGAGGCT
GTGGTGGTGCTGGGGTGTCTGCTGTGACAGCCGCGCCTGGTACCCGAGCCCCCGCCGCCTCGCG
CCTTGGCGGGCTCAACGCACGTGGCTCCGGCCGCGATCTCGCGCCCGTGGGGACCCCCTTGATC
GGGCGTGTCAGCAACCCCAGGTGGAGAACCCCTGGACAGTAGTTTGCAGCTGTTAACATCTGGC
AGGACCTCTCCAGGCCTCCCTTGGTTGGTGCGGTGCGGGCCGAGTCGGTGCGAGTGGGGTTCGA
GCGGTGAGGCTGGCCCAAGGGACTACGGTGTTTCTGGCCTCCCACCGCAGAGATGGGGCAGAGA
GGCCTCCCAGAGATTCCATCGAGCCCTCGGGGTTCCCAGTGGCCCTGGACTACCCAGCTTGTCC
TGAGTGCCAGTTCTGCCTACGACTGACCGGCGCACTGGGGCCAGGATAGGGGAGTACAGTGGTT
GGATCCGGTACCCTTCCCTACCCGTGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGC
ACTAGTCCCAGACATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCT
CTCTGGCACTAAGGACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTG
ATGAACGGAACCGCCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGA
ACTGAGTGTGCTGTGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTT
CAGTACGCCAGCACCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATG
AGAGCCGCACCAATGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAG
CCCAGAGCCGGATGGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGG
GCCAGTGAGGAACTGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTG
CCATGCCTGTCACAGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTC
TCTGGTCACTCCTTCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAG
CCAGCACTACAGAGAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCA
TGCTGGGTGGAGACCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGT
CAGTGCCCGGGCTTCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATC
CCTGCCAAGTCTCCACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTG
ATCTGCGGGTCATCACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTT
AGATCTGAACAATGCCCAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTG
GTTTCCGTGGCAACACCAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCT
ACAACACAGATTACCAGCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGC
AGGGCTGGCACTAGGCAACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCA
CCACAACCGCCACAGTCACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAAC
AGCCCCACTTGGTCCCTGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGG
TGCTGCTCTCACTGTCACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGT
CGTGAACGCAGCCCTGCACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCG
AAGGTCTCAGCAGCCCAGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGA
CTTTGGGCCCACACTAGGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTG
AAGAGGATGCGGCTGGATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCC
CTGATGAAGAGTTGACAATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCC
CACTTCCTTTCTTCTGCTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATT
ATTATTATTGTTATTATTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTC
TTGCCCCTTTCTTGCTCCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGG
GACACTTTGCACGTTGTACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGG
ACAGGTGCCGAGCCCTGCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAA
AAACTACCCAACAACAAAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTT
GTGTCTCGGGATATAGGAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATC
CTGGTCCCTTCAGCTTCCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGAT
CTGGGTGATAGAAAGGCTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCT
AGAAGAAACTGTGGAGAGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGT
GATGACTTGGGACCCTACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCT
TCAGCCTACCCCAGCCCTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAG
TGAAGTGGCTCCAGGTGGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGC
TTTGTGCACCTGTGTCCAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCT
CCTGTAGATGAGGCCCCTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCA
GCTCTCTTTATGCCCCTTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACC
TGCCCTCTTGCTACTGTAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGG
AAACTGTTGTGTTTGTTGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATAT
TGTAATAATAATGACTCAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCC
TTCCTCTCCCAGACTCATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTG
GAAGCATTGGGTCCTTGGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCC
CTCCCCAGCCTGCTCTCTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGG
ATGGGAGACAGCCACACCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTC
AGTGCTGTAGTAAGATGGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGA
TGCAGGGAAGGAGCCAGAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACC
CTGTATTTATGTGTTTGTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGC
CTCTGTGTCTGTGAGCTGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACT
CCCCTCCCTGGGCTGCTCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGT
CGGCCTTCCTCTTCTCCCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCA
TACGGCTGTCCACTAGCCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGA
GCCAACTCAAGTTCCTCTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTAC
CCAGAGTTTTGCCCCCCTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAA
AGAAGCCAGGGTGTAGTTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAA
TGCTGAATGGGTTGATGACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATC
CTTCCTGGACTGAGTTTGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACA
GTGTGCTATTCAACAGTTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTG
TGTGCGCGCTTGCACGTGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACAC
ACACACACACACACACACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGG
GCAGTCTATGAATGAATATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTA
TGTAGGGGCTTCTGGCTGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTT
ACTTTCTTCCTCTCACAAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTG
CCAAAGTAGCCTCTGGCGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGAT
AGTGGGACTGAGGGCCACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGT
ATCCACCCATCCCTCCCCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTT
ATTTGTTTGGAGAGACAAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCG
ACTCTCTGGAACCCCCTGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGC
CCTGTCTGCCTCTACGTAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAG
GAGAATCTGAATTCTCTACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAG
CCAAGAGCTGACCCACCCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTG
AGTCCAAGTGTGTGGCTGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTT
CTAGTATTCTGCACATTCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTC
ACTATATTTGTTGTAAAGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_017591127 ⟹ XP_017446616

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,069 - 173,635,620 (+)	NCBI
Rnor_6.0	2	187,511,776 - 187,541,285 (+)	NCBI

Sequence:

show sequence

AGGGGACCTGTCACAGGTAGAGGGAGCAGCGGAGCTCCCCAGGTAACCACCAGATTAGAGAACG
CGATCTGGCATCGGAGCTTTGTCACACAGCTGCGCTGTGCCTACGTCGGCCTCGAGTCTGGGGC
TGGAGGAGTTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCGAGGCG
GCTTGGGCGCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGGGGTCC
CGGCCCTGTGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGAGCTGC
GGCTTCGCGCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCCCGTTC
CCCCACGGGCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGAC
ATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAAG
GACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACCG
CCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCTG
TGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGCA
CCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCAA
TGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGCCGGAT
GGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGAGGAAC
TGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCAC
AGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCCT
TCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAGA
GAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAGA
CCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGCT
TCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCTC
CACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCAT
CACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTTAGATCTGAACAAT
GCCCAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGTGGCAA
CACCAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACAGATTA
CCAGCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGGCACTA
GGCAACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACCGCCAC
AGTCACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCACTTGGT
CCCTGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCACT
GTCACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCC
CTGCACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCAG
CCCAGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGCCCACA
CTAGGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGGC
TGGATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAAGAGTT
GACAATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCTT
CTGCTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATTATTATTATTGTTA
TTATTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCTTTCTT
GCTCCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTTGCACG
TTGTACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGCCGAGC
CCTGCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACCCAACA
ACAAAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCGGGATA
TAGGAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCCTTCAG
CTTCCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGATAGAA
AGGCTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAACTGTG
GAGAGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTTGGGAC
CCTACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTACCCCA
GCCCTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGGCTCCA
GGTGGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCACCTGT
GTCCAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGATGAGG
CCCCTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTTTATGC
CCCTTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCTTGCTA
CTGTAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTTGTGTT
TGTTGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAATAATG
ACTCAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTCCCAGA
CTCATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATTGGGTC
CTTGGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAGCCTGC
TCTCTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGACAGCC
ACACCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGTAGTAA
GATGGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGAAGGAG
CCAGAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTTATGTG
TTTGTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGTCTGTG
AGCTGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCCTGGGC
TGCTCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTCCTCTT
CTCCCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTGTCCAC
TAGCCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTCAAGTT
CCTCTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTTTTGCC
CCCCTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCAGGGTG
TAGTTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAATGGGTT
GATGACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGGACTGA
GTTTGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTATTCAA
CAGTTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCGCTTGC
ACGTGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACACACACACACACACA
CACACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTATGAAT
GAATATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGGCTTCT
GGCTGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTTCCTCT
CACAAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTAGCCTC
TGGCGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGACTGAGG
GCCACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCCATCCC
TCCCCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTTGGAGA
GACAAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTGGAACC
CCCTGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTGCCTCT
ACGTAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCTGAATT
CTCTACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGCTGACC
CACCCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAGTGTGT
GGCTGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATTCTGCA
CATTCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATTTGTTG
TAAAGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_017591128 ⟹ XP_017446617

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI
Rnor_6.0	2	187,511,775 - 187,541,285 (+)	NCBI

Sequence:

show sequence

GAGGGGACCTGTCACAGGTAGAGGGAGCAGCGGAGCTCCCCAGGTAACCACCAGATTAGAGAAC
GCGATCTGGCATCGGAGCTTTGTCACACACTAGGCTGCGCTGTGCCTACGTCGGCCTCGAGTCT
GGGGCTGGAGGAGTTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCG
AGGCGGCTTGGGCGCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGG
GGTCCCGGCCCTGTGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGA
GCTGCGGCTTCGCGCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCC
CGTTCCCCCACGGGCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCC
CAGACATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCA
CTAAGGACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGG
AACCGCCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTG
TGCTGTGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGC
CAGCACCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGC
ACCAATGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGC
CGGATGGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGA
GGAACTGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCT
GTCACAGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCA
CTCCTTCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACT
ACAGAGAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGT
GGAGACCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCC
GGGCTTCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAA
GTCTCCACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGG
GTCATCACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTTAGATCTGA
ACAATGCCCAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGT
GGCAACACCAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACA
GATTACCAGCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGG
CACTAGGCAACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACC
GCCACAGTCACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCAC
TTGGTCCCTGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTC
TCACTGTCACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACG
CAGCCCTGCACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTC
AGCAGCCCAGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGC
CCACACTAGGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGAT
GCGGCTGGATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAA
GAGTTGACAATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCT
TTCTTCTGCTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATTATTATTAT
TGTTATTATTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCT
TTCTTGCTCCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTT
GCACGTTGTACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGC
CGAGCCCTGCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACC
CAACAACAAAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCG
GGATATAGGAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCC
TTCAGCTTCCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGA
TAGAAAGGCTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAA
CTGTGGAGAGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTT
GGGACCCTACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTA
CCCCAGCCCTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGG
CTCCAGGTGGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCA
CCTGTGTCCAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGA
TGAGGCCCCTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTT
TATGCCCCTTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCT
TGCTACTGTAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTT
GTGTTTGTTGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAA
TAATGACTCAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTC
CCAGACTCATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATT
GGGTCCTTGGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAG
CCTGCTCTCTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGA
CAGCCACACCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGT
AGTAAGATGGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGA
AGGAGCCAGAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTT
ATGTGTTTGTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGT
CTGTGAGCTGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCC
TGGGCTGCTCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTC
CTCTTCTCCCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTG
TCCACTAGCCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTC
AAGTTCCTCTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTT
TTGCCCCCCTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCA
GGGTGTAGTTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAAT
GGGTTGATGACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGG
ACTGAGTTTGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTA
TTCAACAGTTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCG
CTTGCACGTGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACACACACACAC
ACACACACACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTA
TGAATGAATATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGG
CTTCTGGCTGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTT
CCTCTCACAAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTA
GCCTCTGGCGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGAC
TGAGGGCCACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCC
ATCCCTCCCCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTT
GGAGAGACAAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTG
GAACCCCCTGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTG
CCTCTACGTAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCT
GAATTCTCTACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGC
TGACCCACCCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAG
TGTGTGGCTGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATT
CTGCACATTCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATT
TGTTGTAAAGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_017591130 ⟹ XP_017446619

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,607,451 - 173,635,620 (+)	NCBI
Rnor_6.0	2	187,513,104 - 187,541,285 (+)	NCBI

Sequence:

show sequence

TTCTTCTGAGGCCTAGCGGGTTAGCTGTGTGAGTGGTGGATCTTCTCCCTCCCCCTAGCCCTCA
GTGGGTCTGAGCTGCCTGACTGTGGGAAGTTTGCCGTCTGGGACGGTGACCTTGGGCTGCTCTG
GCCGAATCTCGGAGAGGAGCCTACTGAGTGCACTTGGCCTTGGGAGCTGTCCACCTTCTGTTCT
CTCAGTATCCGCGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGA
CATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAA
GGACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACC
GCCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCT
GTGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGC
ACCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCA
ATGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGCCGGA
TGGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGAGGAA
CTGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCA
CAGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCC
TTCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAG
AGAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAG
ACCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGC
TTCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCT
CCACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCA
TCACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTTAGATCTGAACAA
TGCCCAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGTGGCA
ACACCAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACAGATT
ACCAGCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGGCACT
AGGCAACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACCGCCA
CAGTCACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCACTTGG
TCCCTGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCAC
TGTCACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGC
CCTGCACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCA
GCCCAGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGCCCAC
ACTAGGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGG
CTGGATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAAGAGT
TGACAATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCT
TCTGCTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATTATTATTATTGTT
ATTATTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCTTTCT
TGCTCCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTTGCAC
GTTGTACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGCCGAG
CCCTGCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACCCAAC
AACAAAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCGGGAT
ATAGGAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCCTTCA
GCTTCCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGATAGA
AAGGCTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAACTGT
GGAGAGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTTGGGA
CCCTACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTACCCC
AGCCCTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGGCTCC
AGGTGGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCACCTG
TGTCCAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGATGAG
GCCCCTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTTTATG
CCCCTTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCTTGCT
ACTGTAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTTGTGT
TTGTTGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAATAAT
GACTCAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTCCCAG
ACTCATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATTGGGT
CCTTGGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAGCCTG
CTCTCTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGACAGC
CACACCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGTAGTA
AGATGGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGAAGGA
GCCAGAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTTATGT
GTTTGTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGTCTGT
GAGCTGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCCTGGG
CTGCTCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTCCTCT
TCTCCCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTGTCCA
CTAGCCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTCAAGT
TCCTCTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTTTTGC
CCCCCTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCAGGGT
GTAGTTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAATGGGT
TGATGACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGGACTG
AGTTTGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTATTCA
ACAGTTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCGCTTG
CACGTGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACACACACACACACAC
ACACACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTATGAA
TGAATATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGGCTTC
TGGCTGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTTCCTC
TCACAAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTAGCCT
CTGGCGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGACTGAG
GGCCACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCCATCC
CTCCCCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTTGGAG
AGACAAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTGGAAC
CCCCTGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTGCCTC
TACGTAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCTGAAT
TCTCTACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGCTGAC
CCACCCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAGTGTG
TGGCTGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATTCTGC
ACATTCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATTTGTT
GTAAAGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_039103203 ⟹ XP_038959131

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,883 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103204 ⟹ XP_038959132

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103205 ⟹ XP_038959133

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103206 ⟹ XP_038959134

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103207 ⟹ XP_038959135

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103208 ⟹ XP_038959136

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XR_005500377

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_110487	(Get FASTA)	NCBI Sequence Viewer
	XP_006232833	(Get FASTA)	NCBI Sequence Viewer
	XP_017446616	(Get FASTA)	NCBI Sequence Viewer
	XP_017446617	(Get FASTA)	NCBI Sequence Viewer
	XP_017446619	(Get FASTA)	NCBI Sequence Viewer
	XP_038959131	(Get FASTA)	NCBI Sequence Viewer
	XP_038959132	(Get FASTA)	NCBI Sequence Viewer
	XP_038959133	(Get FASTA)	NCBI Sequence Viewer
	XP_038959134	(Get FASTA)	NCBI Sequence Viewer
	XP_038959135	(Get FASTA)	NCBI Sequence Viewer
	XP_038959136	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81790	(Get FASTA)	NCBI Sequence Viewer
	CAA06531	(Get FASTA)	NCBI Sequence Viewer
	EDM00734	(Get FASTA)	NCBI Sequence Viewer
	O89038	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_110487 ⟸ NM_030860

- UniProtKB:

O89038 (UniProtKB/Swiss-Prot), A0A0G2JSU7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFS
SMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQPPQPQPQ
QPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAA
RPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK

hide sequence

RefSeq Acc Id:

XP_006232833 ⟸ XM_006232771

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

XP_017446617 ⟸ XM_017591128

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

XP_017446616 ⟸ XM_017591127

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

XP_017446619 ⟸ XM_017591130

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

ENSRNOP00000041061 ⟸ ENSRNOT00000051394

RefSeq Acc Id:	XP_038959136 ⟸ XM_039103208
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038959133 ⟸ XM_039103205
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038959132 ⟸ XM_039103204
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038959134 ⟸ XM_039103206
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038959135 ⟸ XM_039103207
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038959131 ⟸ XM_039103203
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000079168 ⟸ ENSRNOT00000117311

RefSeq Acc Id:

ENSRNOP00000092351 ⟸ ENSRNOT00000117239

RefSeq Acc Id:

ENSRNOP00000095486 ⟸ ENSRNOT00000099885

Protein Domains

MADS-box

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691429

Promoter ID:

EPDNEW_R1953

Type:

initiation region

Name:

Mef2d_1

Description:

myocyte enhancer factor 2D

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	187,512,170 - 187,512,230	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	206933931	206933932	C	T	snv	SR/JrHsd (MCW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), ZFDM (KyushuU), GK/Ox (KNAW), RCS/Kyo (KyushuU), ZF (KyushuU), SR/JrHsd (KNAW)

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	173625249	173625250	C	T	snv	GK/FarMcwi (2019), SR/JrHsd (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	187530914	187530915	C	T	snv	SR/JrHsd (MCW), GK/Ox (RGD), LH/MavRrrc (RGD), LL/MavRrrc (RGD), SR/JrHsd (2020), GK/FarMcwi (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), SR/JrHsd (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	180239804	180239805	C	T	snv	SR/JrHsd (MCW), GK/Ox (ICL), SR/JrHsd (ICL), LL/MavRrrc (ICL), LH/MavRrrc (ICL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621489	AgrOrtholog
Ensembl Genes	ENSRNOG00000031778	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000041061	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000051394	UniProtKB/TrEMBL
Gene3D-CATH	3.40.1810.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134848	IMAGE-MGC_LOAD
InterPro	HJURP_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MADS_MEF2-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TF_MADSbox	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TF_MADSbox_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:81518	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93400	IMAGE-MGC_LOAD
NCBI Gene	81518	ENTREZGENE
Pfam	HJURP_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SRF-TF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mef2d	PhenoGen
PRINTS	MADSDOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	MADS_BOX_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MADS_BOX_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	MADS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF55455	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JSU7	ENTREZGENE, UniProtKB/TrEMBL
	MEF2D_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q66HL8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Mef2d	myocyte enhancer factor 2D			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Mef2d	myocyte enhancer factor 2D			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_physical_interaction	interacts with mitogen-activated protein kinase (MAP kinase), ERK5/BMK1	633239
gene_product	member of the superfamily of transcription factors containing MADS domain	633239

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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