Mef2d (myocyte enhancer factor 2D)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Mef2d (myocyte enhancer factor 2D) Rattus norvegicus

Analyze

Symbol:

Mef2d

Name:

myocyte enhancer factor 2D

RGD ID:

621489

Description:

Predicted to have several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; histone deacetylase binding activity; and protein dimerization activity. Involved in positive regulation of transcription, DNA-templated. Localizes to nucleus. Orthologous to human MEF2D (myocyte enhancer factor 2D); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

MGC93400; myocyte-specific enhancer factor 2D

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MEF2D (myocyte enhancer factor 2D)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Mef2d (myocyte enhancer factor 2D)	HGNC	EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mef2d (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MEF2D (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MEF2D (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mef2d (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MEF2D (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	MEF2D (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mef2d (myocyte enhancer factor 2D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MEF2D (myocyte enhancer factor 2D)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Mef2d (myocyte enhancer factor 2D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Mef2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	RLM1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	mef-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI
Rnor_6.0 Ensembl	2	187,512,164 - 187,538,026 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	187,511,775 - 187,541,285 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	180,221,078 - 180,246,917 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	180,171,183 - 180,197,019 (+)	NCBI
Celera	2	167,553,069 - 167,578,692 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

migraine without aura (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2-butoxyethanol (ISO)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (EXP)

5-azacytidine (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP,ISO)

arsenite(3-) (ISO)

aspartame (ISO)

atorvastatin calcium (EXP)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

cocaine (EXP,ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dicrotophos (ISO)

diethylstilbestrol (EXP)

doxorubicin (ISO)

ethanol (ISO)

fenvalerate (EXP)

fluoranthene (ISO)

folic acid (ISO)

gentamycin (EXP)

leflunomide (ISO)

mercury dichloride (EXP)

metformin (ISO)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

N-methyl-4-phenylpyridinium (ISO)

palbociclib (ISO)

paracetamol (ISO)

pirinixic acid (EXP,ISO)

rotenone (ISO)

silver atom (ISO)

silver(0) (ISO)

tremolite asbestos (ISO)

troglitazone (ISO)

tungsten (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult heart development (IEA,ISO)

apoptotic process (IEA)

cell differentiation (IBA)

chondrocyte differentiation (IEA,ISO)

endochondral ossification (IEA,ISO)

nervous system development (IEA)

osteoblast differentiation (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

positive regulation of transcription, DNA-templated (IMP,ISO)

positive regulation of vascular associated smooth muscle cell proliferation (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

regulation of transcription, DNA-templated (ISO)

skeletal muscle cell differentiation (IEA,ISO)

Cellular Component

chromatin (IBA)

cytoplasm (IEA,ISO)

intracellular membrane-bounded organelle (ISO)

nucleoplasm (IEA,ISO)

nucleus (IDA,ISO)

Molecular Function

activating transcription factor binding (IEA,ISO)

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,ISO)

enzyme binding (ISO)

histone deacetylase binding (IEA,ISO)

protein binding (IPI,ISO)

protein heterodimerization activity (IEA,ISO)

protein homodimerization activity (IEA,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Hata Y and Sudhof TC, J Biol Chem 1995 Jun 2;270(22):13022-8.
4.	Leupin O, etal., J Bone Miner Res. 2007 Dec;22(12):1957-67.
5.	MGD data from the GO Consortium
6.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	RGD automated data pipeline
8.	RGD automated import pipeline for gene-chemical interactions
9.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10.	Yang CC, etal., Nucleic Acids Res 1998 Oct 15;26(20):4771-7.

Additional References at PubMed

PMID:7760790	PMID:8900141	PMID:9738004	PMID:9858528	PMID:10458488	PMID:12061776	PMID:12130539	PMID:15014501	PMID:15024082	PMID:15480995	PMID:15491989	PMID:15610731
PMID:15735306	PMID:15737621	PMID:16024167	PMID:16112871	PMID:16484497	PMID:16870618	PMID:17158926	PMID:17336904	PMID:17945419	PMID:18093911	PMID:19683055	PMID:19801631
PMID:20363751	PMID:20399744	PMID:20590529	PMID:20816781	PMID:20833138	PMID:21057871	PMID:22147266	PMID:22215669	PMID:22357862	PMID:25931508	PMID:26294766	PMID:28473466
PMID:28807675	PMID:29118903	PMID:30523159

Genomics

Comparative Map Data

Mef2d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI
Rnor_6.0 Ensembl	2	187,512,164 - 187,538,026 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	187,511,775 - 187,541,285 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	180,221,078 - 180,246,917 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	180,171,183 - 180,197,019 (+)	NCBI
Celera	2	167,553,069 - 167,578,692 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

MEF2D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	156,463,727 - 156,500,779 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	156,463,727 - 156,500,840 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	156,433,519 - 156,470,567 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	1	156,433,513 - 156,470,634 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	154,700,143 - 154,737,153 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	153,246,591 - 153,283,602	NCBI
Celera	1	129,506,529 - 129,543,551 (-)	NCBI
Cytogenetic Map	1	q22	NCBI
HuRef	1	127,793,584 - 127,830,590 (-)	NCBI		HuRef
CHM1_1	1	157,829,813 - 157,866,945 (-)	NCBI		CHM1_1

Mef2d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	88,049,248 - 88,079,398 (+)	NCBI	GRCm39		mm39
GRCm38	3	88,141,941 - 88,172,091 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	88,142,372 - 88,172,086 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	87,946,317 - 87,973,089 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	88,228,354 - 88,254,650 (+)	NCBI			mm8
Celera	3	88,181,996 - 88,208,762 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	38.78	NCBI

Mef2d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	2,569,399 - 2,602,579 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	2,569,399 - 2,602,580 (-)	NCBI	ChiLan1.0	ChiLan1.0

MEF2D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	135,637,823 - 135,664,623 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	135,637,801 - 135,653,866 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	131,806,705 - 131,844,420 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MEF2D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	7	41,458,514 - 41,470,197 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	7	41,455,771 - 41,473,807 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Mef2d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936580	5,660,306 - 5,685,333 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MEF2D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	93,581,598 - 93,651,639 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	93,581,563 - 93,616,980 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	102,218,116 - 102,236,160 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MEF2D
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	7,358,647 - 7,394,068 (+)	NCBI
ChlSab1.1 Ensembl	20	7,358,653 - 7,396,972 (+)	Ensembl

Mef2d
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624885	1,685,423 - 1,714,462 (-)	NCBI

Position Markers

D1S262E

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	187,530,893 - 187,531,004	NCBI	Rnor6.0
Rnor_5.0	2	206,933,910 - 206,934,021	UniSTS	Rnor5.0
RGSC_v3.4	2	180,239,783 - 180,239,894	UniSTS	RGSC3.4
Celera	2	167,571,558 - 167,571,669	UniSTS
Cytogenetic Map	2	q34	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42776916	195645082	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	157914311	204022555	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	140566078	217498545	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	140566078	217498545	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	140566078	217498545	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	140566078	217498545	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	140566078	217498545	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	147522550	217498710	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46537589	217498710	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43133606	217498545	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43133606	217498545	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	184730446	229730446	Rat
61473	Bp19	Blood pressure QTL 19	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	186611811	189857032	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	184730446	229730446	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	149114878	225501939	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	181990297	240020001	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56244671	217498710	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42776916	217498710	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141583337	217498710	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66828049	217498710	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42776916	217498710	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147122993	240020001	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	147122993	240020001	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	183984665	228984665	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	142053350	204585731	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	157914409	217498545	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	116075644	228737869	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	186611811	198704485	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	169852800	217498545	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	155965557	254121739	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	155965557	237742948	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	161745602	206745602	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	181522444	226522444	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	172795683	189857032	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	116075644	228737869	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	175403337	239166203	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	118446646	227707979	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	138901276	217498710	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43149788	198704485	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	75687495	221880419	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	158159186	217498710	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83819608	239166203	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66828236	243550655	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83819608	243901375	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	158159186	217498710	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	142053350	228984665	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	181987080	199696953	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	118446793	228582621	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	177680772	243901375	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	218957222	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	23837491	218957222	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	118446646	200453484	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	118446646	200453484	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	169852670	207612467	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78321410	217498710	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	159585731	204585731	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	149614623	198704357	Rat
7488904	Bp363	Blood pressure QTL 363		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	186889035	189857032	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143447078	188447078	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	174160958	219160958	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	177339806	222339806	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	169852670	243026643	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83754907	237610852	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	149614466	205573168	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	149614466	205573168	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	172795683	189857032	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	172795683	199696953	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	16679272	245624402	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	172795683	199696953	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	172795683	189857032	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	172795683	199696953	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	172795683	199696953	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	172795683	189857032	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	172795683	189857032	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	172795683	199696953	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	172795683	189857032	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	44
Count of miRNA genes:	40
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000051394
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	40	24	19	24	8	11	74	32	38	11	8
Low			17	17		17				3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_030860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ005425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000051394 ⟹ ENSRNOP00000041061

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	187,512,164 - 187,538,026 (+)	Ensembl

RefSeq Acc Id:

NM_030860 ⟹ NP_110487

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,490 - 173,632,362 (+)	NCBI
Rnor_6.0	2	187,512,164 - 187,538,027 (+)	NCBI
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI
RGSC_v3.4	2	180,221,078 - 180,246,917 (+)	RGD
Celera	2	167,553,069 - 167,578,692 (+)	RGD

Sequence:

show sequence

CCTTCTATCTCGCAAGCTAGGCTGCGCTGTGCCTACGTCGGCCTCGAGTCTGGGGCTGGAGGAG
TTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCGAGGCGGCTTGGGC
GCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGGGGTCCCGGCCCTG
TGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGAGCTGCGGCTTCGC
GCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCCCGTTCCCCCACGG
GCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGACATTCATGA
GCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAAGGACCCCTG
GAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACCGCCAGGTGA
CATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCTGTGCGACTG
TGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGCACCGACATG
GACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCAATGCTGACA
TCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGCCGGATGGGGAGGA
CTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGAGGAACTGGATGGG
CTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCACAGTGCCCG
TGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCCTTCCCTGGT
GACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAGAGAAACAGT
GTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAGACCTCAACA
GTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGCTTCCCCCGG
CCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCTCCACCCCCA
CCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCATCACTTCCC
AGGGAGGCAAAGGGTTAATGCATCATTTGAACAATGCCCAGCGCCTTGGGGTCTCCCAGTCTAC
CCACTCGCTCACCACCCCAGTGGTTTCCGTGGCAACACCAAGTTTACTCAGCCAGGGCCTCCCC
TTCTCCTCCATGCCCACTGCCTACAACACAGATTACCAGCTGCCCAGTGCAGAGCTTTCCTCCT
TACCAGCCTTCAGCTCACCTGCAGGGCTGGCACTAGGCAACGTCACCGCCTGGCAGCAGCCCCA
GCAGCCCCAGCAGCCACAACCACCACAACCGCCACAGTCACAGCCACAGCCACCACAGCCACAG
CCACAGCAGCCACCTCAGCAACAGCCCCACTTGGTCCCTGTTTCTCTCAGCAACCTCATCCCTG
GCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCACTGTCACTACCCACCCCCACATCAGCATCAA
GTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCCCTGCACCTCCTCCACCAGCTGTGTTCCCA
GCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCAGCCCAGCTGGAGGATCCTATGAGACCGGGG
ACCGGGATGATGGACGGGGGGACTTTGGGCCCACACTAGGCCTGCTGCGCCCAGCCCCAGAGCC
TGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGGCTGGATACTTGGACATTAAAGTGATGGTTC
CCACTCCCATCTCTCAGCCTCCCTGATGAAGAGTTGACAATCTCACCGCCCACCCCTCCCTGTC
CTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCTTCTGCTCCATGTCCTGTTGATGGTTACATT
TGTGTATAATTATATTATTATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232771 ⟹ XP_006232833

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,607,114 - 173,635,620 (+)	NCBI
Rnor_6.0	2	187,512,497 - 187,541,285 (+)	NCBI
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI

Sequence:

show sequence

GACGCGCGTCGGCCCCTTTAAGAGCCCCTCCCCCATGCCGCGCGGCCGGGCGCAGGGTGGTCTG
GAGCGCGAGGGGTGTACGGGCGCCCTGGCATAAGCGTCCCGGGCCGAGCGGGGCGGCGGAGGCT
GTGGTGGTGCTGGGGTGTCTGCTGTGACAGCCGCGCCTGGTACCCGAGCCCCCGCCGCCTCGCG
CCTTGGCGGGCTCAACGCACGTGGCTCCGGCCGCGATCTCGCGCCCGTGGGGACCCCCTTGATC
GGGCGTGTCAGCAACCCCAGGTGGAGAACCCCTGGACAGTAGTTTGCAGCTGTTAACATCTGGC
AGGACCTCTCCAGGCCTCCCTTGGTTGGTGCGGTGCGGGCCGAGTCGGTGCGAGTGGGGTTCGA
GCGGTGAGGCTGGCCCAAGGGACTACGGTGTTTCTGGCCTCCCACCGCAGAGATGGGGCAGAGA
GGCCTCCCAGAGATTCCATCGAGCCCTCGGGGTTCCCAGTGGCCCTGGACTACCCAGCTTGTCC
TGAGTGCCAGTTCTGCCTACGACTGACCGGCGCACTGGGGCCAGGATAGGGGAGTACAGTGGTT
GGATCCGGTACCCTTCCCTACCCGTGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGC
ACTAGTCCCAGACATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCT
CTCTGGCACTAAGGACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTG
ATGAACGGAACCGCCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGA
ACTGAGTGTGCTGTGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTT
CAGTACGCCAGCACCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATG
AGAGCCGCACCAATGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAG
CCCAGAGCCGGATGGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGG
GCCAGTGAGGAACTGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTG
CCATGCCTGTCACAGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTC
TCTGGTCACTCCTTCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAG
CCAGCACTACAGAGAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCA
TGCTGGGTGGAGACCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGT
CAGTGCCCGGGCTTCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATC
CCTGCCAAGTCTCCACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTG
ATCTGCGGGTCATCACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTT
AGATCTGAACAATGCCCAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTG
GTTTCCGTGGCAACACCAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCT
ACAACACAGATTACCAGCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGC
AGGGCTGGCACTAGGCAACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCA
CCACAACCGCCACAGTCACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAAC
AGCCCCACTTGGTCCCTGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGG
TGCTGCTCTCACTGTCACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGT
CGTGAACGCAGCCCTGCACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCG
AAGGTCTCAGCAGCCCAGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGA
CTTTGGGCCCACACTAGGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTG
AAGAGGATGCGGCTGGATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCC
CTGATGAAGAGTTGACAATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCC
CACTTCCTTTCTTCTGCTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATT
ATTATTATTGTTATTATTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTC
TTGCCCCTTTCTTGCTCCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGG
GACACTTTGCACGTTGTACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGG
ACAGGTGCCGAGCCCTGCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAA
AAACTACCCAACAACAAAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTT
GTGTCTCGGGATATAGGAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATC
CTGGTCCCTTCAGCTTCCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGAT
CTGGGTGATAGAAAGGCTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCT
AGAAGAAACTGTGGAGAGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGT
GATGACTTGGGACCCTACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCT
TCAGCCTACCCCAGCCCTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAG
TGAAGTGGCTCCAGGTGGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGC
TTTGTGCACCTGTGTCCAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCT
CCTGTAGATGAGGCCCCTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCA
GCTCTCTTTATGCCCCTTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACC
TGCCCTCTTGCTACTGTAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGG
AAACTGTTGTGTTTGTTGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATAT
TGTAATAATAATGACTCAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCC
TTCCTCTCCCAGACTCATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTG
GAAGCATTGGGTCCTTGGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCC
CTCCCCAGCCTGCTCTCTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGG
ATGGGAGACAGCCACACCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTC
AGTGCTGTAGTAAGATGGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGA
TGCAGGGAAGGAGCCAGAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACC
CTGTATTTATGTGTTTGTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGC
CTCTGTGTCTGTGAGCTGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACT
CCCCTCCCTGGGCTGCTCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGT
CGGCCTTCCTCTTCTCCCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCA
TACGGCTGTCCACTAGCCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGA
GCCAACTCAAGTTCCTCTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTAC
CCAGAGTTTTGCCCCCCTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAA
AGAAGCCAGGGTGTAGTTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAA
TGCTGAATGGGTTGATGACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATC
CTTCCTGGACTGAGTTTGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACA
GTGTGCTATTCAACAGTTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTG
TGTGCGCGCTTGCACGTGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACAC
ACACACACACACACACACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGG
GCAGTCTATGAATGAATATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTA
TGTAGGGGCTTCTGGCTGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTT
ACTTTCTTCCTCTCACAAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTG
CCAAAGTAGCCTCTGGCGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGAT
AGTGGGACTGAGGGCCACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGT
ATCCACCCATCCCTCCCCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTT
ATTTGTTTGGAGAGACAAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCG
ACTCTCTGGAACCCCCTGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGC
CCTGTCTGCCTCTACGTAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAG
GAGAATCTGAATTCTCTACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAG
CCAAGAGCTGACCCACCCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTG
AGTCCAAGTGTGTGGCTGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTT
CTAGTATTCTGCACATTCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTC
ACTATATTTGTTGTAAAGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_006232772 ⟹ XP_006232834

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	187,511,776 - 187,541,285 (+)	NCBI
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI

Sequence:

show sequence

AGGGGACCTGTCACAGGTAGAGGGAGCAGCGGAGCTCCCCAGGTAACCACCAGATTAGAGAACG
CGATCTGGCATCGGAGCTTTGTCACACAGCTGCGCTGTGCCTACGTCGGCCTCGAGTCTGGGGC
TGGAGGAGTTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCGAGGCG
GCTTGGGCGCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGGGGTCC
CGGCCCTGTGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGAGCTGC
GGCTTCGCGCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCCCGTTC
CCCCACGGGCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGAC
ATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAAG
GACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACCG
CCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCTG
TGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGCA
CCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCAA
TGCTGACATCATTGAGGCGCTGCACAAGAAGCACAGGGAATGTGAGAGCCCCGAGGTGGACGAG
GCGTTTGCCCTGACCCCCCAGACGGAGGAGAAGTATAAAAAGATAGACGAGGAGTTTGATAAGA
TGATGCAGAGTTATAGACTGGCCTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCACAGT
GCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCCTTCC
CTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAGAGAA
ACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAGACCT
CAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGCTTCC
CCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCTCCAC
CCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCATCAC
TTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTTAGATCTGAACAATGCC
CAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGTGGCAACAC
CAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACAGATTACCA
GCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGGCACTAGGC
AACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACCGCCACAGT
CACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCACTTGGTCCC
TGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCACTGTC
ACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCCCTG
CACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCAGCCC
AGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGCCCACACTA
GGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGGCTGG
ATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAAGAGTTGAC
AATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCTTCTG
CTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATTATTATTATTGTTATTA
TTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCTTTCTTGCT
CCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTTGCACGTTG
TACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGCCGAGCCCT
GCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACCCAACAACA
AAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCGGGATATAG
GAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCCTTCAGCTT
CCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGATAGAAAGG
CTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAACTGTGGAG
AGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTTGGGACCCT
ACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTACCCCAGCC
CTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGGCTCCAGGT
GGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCACCTGTGTC
CAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGATGAGGCCC
CTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTTTATGCCCC
TTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCTTGCTACTG
TAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTTGTGTTTGT
TGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAATAATGACT
CAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTCCCAGACTC
ATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATTGGGTCCTT
GGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAGCCTGCTCT
CTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGACAGCCACA
CCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGTAGTAAGAT
GGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGAAGGAGCCA
GAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTTATGTGTTT
GTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGTCTGTGAGC
TGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCCTGGGCTGC
TCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTCCTCTTCTC
CCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTGTCCACTAG
CCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTCAAGTTCCT
CTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTTTTGCCCCC
CTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCAGGGTGTAG
TTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAATGGGTTGAT
GACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGGACTGAGTT
TGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTATTCAACAG
TTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCGCTTGCACG
TGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACACACACACACACACACAC
ACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTATGAATGAA
TATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGGCTTCTGGC
TGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTTCCTCTCAC
AAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTAGCCTCTGG
CGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGACTGAGGGCC
ACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCCATCCCTCC
CCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTTGGAGAGAC
AAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTGGAACCCCC
TGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTGCCTCTACG
TAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCTGAATTCTC
TACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGCTGACCCAC
CCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAGTGTGTGGC
TGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATTCTGCACAT
TCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATTTGTTGTAA
AGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_006232773 ⟹ XP_006232835

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	187,511,776 - 187,541,285 (+)	NCBI
Rnor_5.0	2	206,915,181 - 206,944,302 (+)	NCBI

Sequence:

show sequence

AGGGGACCTGTCACAGGTAGAGGGAGCAGCGGAGCTCCCCAGGTAACCACCAGATTAGAGAACG
CGATCTGGCATCGGAGCTTTGTCACACAGCTGCGCTGTGCCTACGTCGGCCTCGAGTCTGGGGC
TGGAGGAGTTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCGAGGCG
GCTTGGGCGCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGGGGTCC
CGGCCCTGTGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGAGCTGC
GGCTTCGCGCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCCCGTTC
CCCCACGGGCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGAC
ATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAAG
GACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACCG
CCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCTG
TGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGCA
CCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCAA
TGCTGACATCATTGAGGCGCTGCACAAGAAGCACAGGGAATGTGAGAGCCCCGAGGTGGACGAG
GCGTTTGCCCTGACCCCCCAGACGGAGGAGAAGTATAAAAAGATAGACGAGGAGTTTGATAAGA
TGATGCAGAGTTATAGACTGGCCTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCACAGT
GCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCCTTCC
CTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAGAGAA
ACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAGACCT
CAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGCTTCC
CCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCTCCAC
CCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCATCAC
TTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGAACAATGCCCAGCGCCTTGGGGTCTCCCAG
TCTACCCACTCGCTCACCACCCCAGTGGTTTCCGTGGCAACACCAAGTTTACTCAGCCAGGGCC
TCCCCTTCTCCTCCATGCCCACTGCCTACAACACAGATTACCAGCTGCCCAGTGCAGAGCTTTC
CTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGGCACTAGGCAACGTCACCGCCTGGCAGCAG
CCCCAGCAGCCCCAGCAGCCACAACCACCACAACCGCCACAGTCACAGCCACAGCCACCACAGC
CACAGCCACAGCAGCCACCTCAGCAACAGCCCCACTTGGTCCCTGTTTCTCTCAGCAACCTCAT
CCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCACTGTCACTACCCACCCCCACATCAGC
ATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCCCTGCACCTCCTCCACCAGCTGTGT
TCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCAGCCCAGCTGGAGGATCCTATGAGAC
CGGGGACCGGGATGATGGACGGGGGGACTTTGGGCCCACACTAGGCCTGCTGCGCCCAGCCCCA
GAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGGCTGGATACTTGGACATTAAAGTGAT
GGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAAGAGTTGACAATCTCACCGCCCACCCCTCC
CTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCTTCTGCTCCATGTCCTGTTGATGGTT
ACATTTGTGTATAATTATATTATTATTATTATTATTGTTATTATTATTATATTTTTAAATTCAA
ATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCTTTCTTGCTCCCACCATTTTCACTGATGGG
GGACTCTCTTTATTGCGGGAAAGGGGGGACACTTTGCACGTTGTACACATATGCTGCAGGAAGG
GGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGCCGAGCCCTGCATGTGGAGCCCTCCCATCC
CATTCCCAGATAGACGTAAAGAACCAAAAACTACCCAACAACAAAACCCAGACAGTGGACTGAA
ACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCGGGATATAGGAGGAGGTGGAGTTTCTGCTT
CTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCCTTCAGCTTCCTGCATACATACTGCACTCA
CTGATCCTGTGTGCTACACCCCAAGATCTGGGTGATAGAAAGGCTGCCTAGGATTCTGAGGCCA
GGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAACTGTGGAGAGGGACAGCTGTAGAAAGAGA
GCTGAGGAGGACAGAAGGACTGGGTGTGATGACTTGGGACCCTACCCCCAGCTTTTCCTTTAAG
ATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTACCCCAGCCCTAAAGAAAGCTGGCCATGTC
CTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGGCTCCAGGTGGGCCAGAGTCATCCTGGGGC
ACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCACCTGTGTCCAGAGAGTACACACTAGGCAC
ATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGATGAGGCCCCTAGCCCTTCCCCAGGCCTCT
GAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTTTATGCCCCTTGTCTCGCTACCTCCTGTCC
CTACACCTCCAGGCCACATCCCATACCTGCCCTCTTGCTACTGTAATTGTAAATAGAGACCTTT
CAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTTGTGTTTGTTGTTGTTGTATTGATATGAAA
TGAGATTCTATTTTTGTCAAAGTATATTGTAATAATAATGACTCAAATGGCCCGTCCTGTACAG
ATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTCCCAGACTCATGCTTTGTGGCCTCCTCAGT
GGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATTGGGTCCTTGGGCCTCTTGCTGGATCTGAG
GTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAGCCTGCTCTCTGTCACCATCCCTGCCCTTC
CTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGACAGCCACACCCCCTTGGAGCTCCCTCCCA
GCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGTAGTAAGATGGTCTTTGCCCAACTATGACC
CAGCCTTTTGTAGTATTTGACACTTGATGCAGGGAAGGAGCCAGAAGCAGAGGGGTGTGAGCAT
GCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTTATGTGTTTGTGTGCAGCTGTGCGGATGTA
CCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGTCTGTGAGCTGGATGTGTTTACAAGGGATA
GGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCCTGGGCTGCTCTCAGTCCCAAAACATTTTA
CTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTCCTCTTCTCCCCACAGCCTACCTCCACCAG
GGCTTCACATTTGGAGCTCTGCCTCCATACGGCTGTCCACTAGCCCCACCCAGTCACAGTTCCA
TCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTCAAGTTCCTCTTCCTCCTGGGAGCTTTGCC
TTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTTTTGCCCCCCTCCTCAGTTCCTAGAGGGAA
GTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCAGGGTGTAGTTCTGTGCTCCCCTTGAAGTA
GCTGGCACATTATAGGCCCTTAGTAAATGCTGAATGGGTTGATGACAGGTGCTCAATAAATGTG
GAATCACGGCTTCATCTCAGGCCTATCCTTCCTGGACTGAGTTTGGCCACCATTATACACACAG
CTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTATTCAACAGTTTGCCATCTGCTTCCCGAAA
GCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCGCTTGCACGTGGGTGTGTGGGTGTGTGGGT
GTGTATCACACACACACACACACACACACACACACACACACACACACACACACACACGAGTTCC
TATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTATGAATGAATATGTGACATTTCTGAAGTTC
AGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGGCTTCTGGCTGGCCAGGTAAATGGATCCCT
GGGAACCCAGACCTCAAATGGGGACTTACTTTCTTCCTCTCACAAGCCAAATTTGCCTCCTATC
CACTCCCTCTACAAAACTGGGTATTTGCCAAAGTAGCCTCTGGCGTCATCCAGTGCCCTTCCCA
CCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGACTGAGGGCCACCCCCACATGCCTCAATGGA
ACACATTTCCTCCATCCCCAGCAGTGTATCCACCCATCCCTCCCCCACTCGAACAGGAAGGAAG
AAATGCACCTTCTCTTGCTCATTATTTATTTGTTTGGAGAGACAAAAATGATGGGAAAGTATCT
AAAAATCTCTCTCTCTATTTTTATGCGACTCTCTGGAACCCCCTGTGGGGGAATGTCAGCTCTC
CTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTGCCTCTACGTAAGCGGAAGGGATGGGACAT
AATGGGACAGGAGGGCTGATTCCCAAGGAGAATCTGAATTCTCTACCCCATTCAATCCCAGAAA
GAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGCTGACCCACCCCCAAACTTGACAATCACCC
ACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAGTGTGTGGCTGTTGATTTGTTTTCATTATT
TCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATTCTGCACATTCAGAAAAGTCCTCGAGATTC
TTACGAGTTTGGTTTGAAAACTCTTTCACTATATTTGTTGTAAAGAGGTTTACTATTAAAAGAA
AAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_017591127 ⟹ XP_017446616

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,069 - 173,635,620 (+)	NCBI
Rnor_6.0	2	187,511,776 - 187,541,285 (+)	NCBI

Sequence:

show sequence

AGGGGACCTGTCACAGGTAGAGGGAGCAGCGGAGCTCCCCAGGTAACCACCAGATTAGAGAACG
CGATCTGGCATCGGAGCTTTGTCACACAGCTGCGCTGTGCCTACGTCGGCCTCGAGTCTGGGGC
TGGAGGAGTTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCGAGGCG
GCTTGGGCGCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGGGGTCC
CGGCCCTGTGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGAGCTGC
GGCTTCGCGCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCCCGTTC
CCCCACGGGCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGAC
ATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAAG
GACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACCG
CCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCTG
TGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGCA
CCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCAA
TGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGCCGGAT
GGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGAGGAAC
TGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCAC
AGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCCT
TCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAGA
GAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAGA
CCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGCT
TCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCTC
CACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCAT
CACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTTAGATCTGAACAAT
GCCCAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGTGGCAA
CACCAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACAGATTA
CCAGCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGGCACTA
GGCAACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACCGCCAC
AGTCACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCACTTGGT
CCCTGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCACT
GTCACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCC
CTGCACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCAG
CCCAGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGCCCACA
CTAGGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGGC
TGGATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAAGAGTT
GACAATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCTT
CTGCTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATTATTATTATTGTTA
TTATTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCTTTCTT
GCTCCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTTGCACG
TTGTACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGCCGAGC
CCTGCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACCCAACA
ACAAAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCGGGATA
TAGGAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCCTTCAG
CTTCCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGATAGAA
AGGCTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAACTGTG
GAGAGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTTGGGAC
CCTACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTACCCCA
GCCCTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGGCTCCA
GGTGGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCACCTGT
GTCCAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGATGAGG
CCCCTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTTTATGC
CCCTTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCTTGCTA
CTGTAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTTGTGTT
TGTTGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAATAATG
ACTCAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTCCCAGA
CTCATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATTGGGTC
CTTGGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAGCCTGC
TCTCTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGACAGCC
ACACCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGTAGTAA
GATGGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGAAGGAG
CCAGAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTTATGTG
TTTGTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGTCTGTG
AGCTGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCCTGGGC
TGCTCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTCCTCTT
CTCCCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTGTCCAC
TAGCCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTCAAGTT
CCTCTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTTTTGCC
CCCCTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCAGGGTG
TAGTTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAATGGGTT
GATGACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGGACTGA
GTTTGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTATTCAA
CAGTTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCGCTTGC
ACGTGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACACACACACACACACA
CACACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTATGAAT
GAATATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGGCTTCT
GGCTGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTTCCTCT
CACAAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTAGCCTC
TGGCGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGACTGAGG
GCCACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCCATCCC
TCCCCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTTGGAGA
GACAAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTGGAACC
CCCTGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTGCCTCT
ACGTAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCTGAATT
CTCTACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGCTGACC
CACCCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAGTGTGT
GGCTGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATTCTGCA
CATTCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATTTGTTG
TAAAGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_017591128 ⟹ XP_017446617

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI
Rnor_6.0	2	187,511,775 - 187,541,285 (+)	NCBI

Sequence:

show sequence

GAGGGGACCTGTCACAGGTAGAGGGAGCAGCGGAGCTCCCCAGGTAACCACCAGATTAGAGAAC
GCGATCTGGCATCGGAGCTTTGTCACACACTAGGCTGCGCTGTGCCTACGTCGGCCTCGAGTCT
GGGGCTGGAGGAGTTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCG
AGGCGGCTTGGGCGCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGG
GGTCCCGGCCCTGTGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGA
GCTGCGGCTTCGCGCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCC
CGTTCCCCCACGGGCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCC
CAGACATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCA
CTAAGGACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGG
AACCGCCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTG
TGCTGTGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGC
CAGCACCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGC
ACCAATGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGC
CGGATGGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGA
GGAACTGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCT
GTCACAGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCA
CTCCTTCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACT
ACAGAGAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGT
GGAGACCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCC
GGGCTTCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAA
GTCTCCACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGG
GTCATCACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTTAGATCTGA
ACAATGCCCAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGT
GGCAACACCAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACA
GATTACCAGCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGG
CACTAGGCAACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACC
GCCACAGTCACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCAC
TTGGTCCCTGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTC
TCACTGTCACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACG
CAGCCCTGCACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTC
AGCAGCCCAGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGC
CCACACTAGGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGAT
GCGGCTGGATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAA
GAGTTGACAATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCT
TTCTTCTGCTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATTATTATTAT
TGTTATTATTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCT
TTCTTGCTCCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTT
GCACGTTGTACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGC
CGAGCCCTGCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACC
CAACAACAAAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCG
GGATATAGGAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCC
TTCAGCTTCCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGA
TAGAAAGGCTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAA
CTGTGGAGAGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTT
GGGACCCTACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTA
CCCCAGCCCTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGG
CTCCAGGTGGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCA
CCTGTGTCCAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGA
TGAGGCCCCTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTT
TATGCCCCTTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCT
TGCTACTGTAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTT
GTGTTTGTTGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAA
TAATGACTCAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTC
CCAGACTCATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATT
GGGTCCTTGGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAG
CCTGCTCTCTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGA
CAGCCACACCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGT
AGTAAGATGGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGA
AGGAGCCAGAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTT
ATGTGTTTGTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGT
CTGTGAGCTGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCC
TGGGCTGCTCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTC
CTCTTCTCCCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTG
TCCACTAGCCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTC
AAGTTCCTCTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTT
TTGCCCCCCTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCA
GGGTGTAGTTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAAT
GGGTTGATGACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGG
ACTGAGTTTGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTA
TTCAACAGTTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCG
CTTGCACGTGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACACACACACAC
ACACACACACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTA
TGAATGAATATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGG
CTTCTGGCTGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTT
CCTCTCACAAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTA
GCCTCTGGCGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGAC
TGAGGGCCACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCC
ATCCCTCCCCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTT
GGAGAGACAAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTG
GAACCCCCTGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTG
CCTCTACGTAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCT
GAATTCTCTACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGC
TGACCCACCCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAG
TGTGTGGCTGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATT
CTGCACATTCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATT
TGTTGTAAAGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_017591129 ⟹ XP_017446618

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	187,513,315 - 187,541,285 (+)	NCBI

Sequence:

show sequence

ATCCGCGGAGGGGAGCTTTGGTGAGGTACCTGTCAGTGTCCTCAGACAGCCAGCTTCTGGCCAC
TGGCCACCAAGCCCCAGTGCTCAGCCTGGCTGTCCCAGCTCCCATGGCCTTGCCTGTGAATGAA
TTTCCTTCCTGCGTCTTCCAGGATGGGGGTGGGGTGGGATGAATGTGGGAGTGGCTGAGAACCT
TGTTATGTAGGGTGGTTGGGGAATTCTGGAGCTTCTGTAGAGCACTTTTCCCATATACCCCAGA
AATGGACAGAGGCTTTGGGATCTCAGTGGTCATTGTCTTTGTTGTGACTCCTGTGCCCTTCATA
CAAGTACCTTGTGTGTGACTGCTGCATGTACTTTTAGGGAGTCAGCAGCTTTCATTCATTCCCA
TACCTACCAAAGTGGTAGAGCATTTTACTTGAGATCACACTTCAAATTTTCTATCAGACTTTGG
TCTTCCCTCTCTCTGTCACATATTTCATGCAGGGACTCTTAAGATTAAGAATGAAGACATACAA
GCCTTGCTCATGCAGGCCTGAGCTTAGAGAAGAAACAGGACCCAGCCAGAAAGTATGGGAAGCC
TTGTGTTGGGGGATGGGCACAGGGCTTGTGCTGCCTCTGTTAAGCCCAGTGCCTGGAACAGGGT
GTGGGGGACTTGGACAGGAGGCAGGTGCAGGTTGCCCATCCCCCTCTGTGTGGTGATATGGGGC
TGGAGGGCCCCAGTTCCCTGCTCTGGCTCTCTGGCTTCTAGTGCACCTCATAGGCTGGGCGATG
TGACAGGCTGGCTGGCTGCCGTTATATAATCTCTCTCCAGCAGGTTTTTTTTTTTTTTTCTTTC
TTCTCCTGGTCTTCCTTGGTGGTGTGTTGGGAAAGGTAGAGGGAGTCTCTCCATGTCTGGAGCT
GGACCAGGGGACAGGGTTAAGCTCACTGAGGCCCCACTCTGACCCTGCTCTTGAAAGGGGCCTC
TGCTGCAGCATCCTTGGCCCTTATGTCCTTGGCCTGGACCTCTGTCCGTCTTCCCAGCTTTGTC
TTCTGTGCCAACTGAGTTTCCTGTCCTCCATGATTGCTCTGGCCTAGTGCAGGTCCTTGGGACA
CTTTGCCACCCACACTAGAGTTGAGTTGGTAGGCTGGCTTTTTTCTGTTGCCTCCACTTCTCTG
TCCCTTACCTAGACAATTGTGTGGCCTACAGAAGAGCTGCAGGCGAGGGGGACACTATGGGTCA
CAAGTACAGTTGGTATTGTCCAGGTTCCCTAATGGGACTGATAATCTGAGGCAGGCCCAAGGCT
GTTGGCAAAGGTCAGATCTAGGACTGTGGATCTGTGGTGGTGGGCTCTCCCCACACCTTGAGAC
CTTGGCCAAGACTCTGTAGGTCCTCTGAAGCCAACTGGCCTGAGCAAATTATCTCCCTTTACAG
GGAAGTGGGAAGGAGGAATGGTCGCACGCCGCACAGCCTCCGCATCGCTGTAATCACTGGTGGC
TTTTATGAGGTAGTCATGGGGCCAGAGTCCAGCTAACCCTCGCTGTCCTCCTGTCCCAGTTTGG
TGACTTACTCATTGGGGAGGGGGTGGCATTAGCTGCTAGAAGCTGTGCTAAAGATGCAGACATC
TGGCTGTGTTGTGGCTAACATTGTCCTCTACACAGTTAAGAGAAGGCTGGATGAAGCTTGGATA
TCAGAAATTCCATTGAAGCCAGGTTAGGGAAAAGATAACTCTTAACTTGGCCAGTAAAAAGAGG
GAATCTCAGGCATTCTCCAGTGACTCTGCTAAAAAGGCTTTTGACCTATGGCCTAGTGGGCCGG
TGCTATTTGGCTCCTGGAATATTTTCTCATCTCTCCCTGCCTAGGACAAAACATAATCTGAGGA
GTTGTCCTGGAGCTGTGAGAATACTGTCCTCTGAGTCCCTTCCCCAGAAATCATTTTGAGGGTC
TCTTGCAGGCCCAGCTGCACCTGGCAGTCTGCAGCAGGTCATGGGACACATGCAGGGAAGGTGT
GCAGTGCACTCTTGGGGGTGTGACACCCACAGAGCAGCTGTTGCACTGTGGGGGGTGGGGGCAG
TGGTGGTAAAGATGATTAAAGGATTGGAGAGTGGGGGGTGGTGAGGGACTGGAGGCAGGAAGGC
GAAAGGCTCACAGAACCCAGAGAGCCTGGGCTGGAAGCAGGGGCTGAGGTCAGAGCACAGATGG
GCAGGCAGGGCCTGTCTGTGGAGAGCATGCTTTGTGAGTCAGGGAGCACTGGCTGACTTCCACC
CTCCCTTGTTGCCTGTTCCCTGTTGCCACTGCCCCCCACCCTGGCCTTAGTCCTTGGGAGGCTG
TGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGACATTCATGAGCACAGTGTGA
GGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAAGGACCCCTGGAGAAGATGGG
GAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACCGCCAGGTGACATTCACCAAG
CGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCTGTGCGACTGTGAGATCGCGC
TCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGCACCGACATGGACAAGGTGCT
GCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCAATGCTGACATCATTGAGACC
CTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGCCGGATGGGGAGGACTCACTGGAGC
AGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGAGGAACTGGATGGGCTCTTCAGGCG
CTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCACAGTGCCCGTGTCCAATCAG
AGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCCTTCCCTGGTGACATCATCCC
TTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAGAGAAACAGTGTTTCTCCGGG
CCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAGACCTCAACAGTGCTAATGGA
GCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGCTTCCCCCGGCCTCCTCCCTG
TGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCTCCACCCCCACCCACCCACAA
CACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCATCACTTCCCAGGGAGGCAAA
GGGTTAATGCATCATTTGACTGAGGACCATTTAGATCTGAACAATGCCCAGCGCCTTGGGGTCT
CCCAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGTGGCAACACCAAGTTTACTCAGCCA
GGGCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACAGATTACCAGCTGCCCAGTGCAGAG
CTTTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGGCACTAGGCAACGTCACCGCCTGGC
AGCAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACCGCCACAGTCACAGCCACAGCCACC
ACAGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCACTTGGTCCCTGTTTCTCTCAGCAAC
CTCATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCACTGTCACTACCCACCCCCACA
TCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCCCTGCACCTCCTCCACCAGC
TGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCAGCCCAGCTGGAGGATCCTAT
GAGACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGCCCACACTAGGCCTGCTGCGCCCAG
CCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGGCTGGATACTTGGACATTAAA
GTGATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAAGAGTTGACAATCTCACCGCCCACC
CCTCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCTTCTGCTCCATGTCCTGTTGA
TGGTTACATTTGTGTATAATTATATTATTATTATTATTATTGTTATTATTATTATATTTTTAAA
TTCAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCTTTCTTGCTCCCACCATTTTCACTG
ATGGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTTGCACGTTGTACACATATGCTGCAG
GAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGCCGAGCCCTGCATGTGGAGCCCTCC
CATCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACCCAACAACAAAACCCAGACAGTGGA
CTGAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCGGGATATAGGAGGAGGTGGAGTTTC
TGCTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCCTTCAGCTTCCTGCATACATACTGC
ACTCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGATAGAAAGGCTGCCTAGGATTCTGA
GGCCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAACTGTGGAGAGGGACAGCTGTAGAA
AGAGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTTGGGACCCTACCCCCAGCTTTTCCT
TTAAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTACCCCAGCCCTAAAGAAAGCTGGCC
ATGTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGGCTCCAGGTGGGCCAGAGTCATCCT
GGGGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCACCTGTGTCCAGAGAGTACACACTA
GGCACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGATGAGGCCCCTAGCCCTTCCCCAGG
CCTCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTTTATGCCCCTTGTCTCGCTACCTCC
TGTCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCTTGCTACTGTAATTGTAAATAGAGA
CCTTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTTGTGTTTGTTGTTGTTGTATTGATA
TGAAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAATAATGACTCAAATGGCCCGTCCTG
TACAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTCCCAGACTCATGCTTTGTGGCCTCC
TCAGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATTGGGTCCTTGGGCCTCTTGCTGGAT
CTGAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAGCCTGCTCTCTGTCACCATCCCTGC
CCTTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGACAGCCACACCCCCTTGGAGCTCCC
TCCCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGTAGTAAGATGGTCTTTGCCCAACTA
TGACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGAAGGAGCCAGAAGCAGAGGGGTGTG
AGCATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTTATGTGTTTGTGTGCAGCTGTGCGG
ATGTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGTCTGTGAGCTGGATGTGTTTACAAG
GGATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCCTGGGCTGCTCTCAGTCCCAAAACA
TTTTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTCCTCTTCTCCCCACAGCCTACCTCC
ACCAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTGTCCACTAGCCCCACCCAGTCACAG
TTCCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTCAAGTTCCTCTTCCTCCTGGGAGCT
TTGCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTTTTGCCCCCCTCCTCAGTTCCTAGA
GGGAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCAGGGTGTAGTTCTGTGCTCCCCTTG
AAGTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAATGGGTTGATGACAGGTGCTCAATAA
ATGTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGGACTGAGTTTGGCCACCATTATACA
CACAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTATTCAACAGTTTGCCATCTGCTTCC
CGAAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCGCTTGCACGTGGGTGTGTGGGTGTG
TGGGTGTGTATCACACACACACACACACACACACACACACACACACACACACACACACACACGA
GTTCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTATGAATGAATATGTGACATTTCTGA
AGTTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGGCTTCTGGCTGGCCAGGTAAATGGA
TCCCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTTCCTCTCACAAGCCAAATTTGCCTC
CTATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTAGCCTCTGGCGTCATCCAGTGCCCT
TCCCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGACTGAGGGCCACCCCCACATGCCTCA
ATGGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCCATCCCTCCCCCACTCGAACAGGAA
GGAAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTTGGAGAGACAAAAATGATGGGAAAG
TATCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTGGAACCCCCTGTGGGGGAATGTCAG
CTCTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTGCCTCTACGTAAGCGGAAGGGATGG
GACATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCTGAATTCTCTACCCCATTCAATCCC
AGAAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGCTGACCCACCCCCAAACTTGACAAT
CACCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAGTGTGTGGCTGTTGATTTGTTTTCA
TTATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATTCTGCACATTCAGAAAAGTCCTCGA
GATTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATTTGTTGTAAAGAGGTTTACTATTAA
AAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_017591130 ⟹ XP_017446619

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,607,451 - 173,635,620 (+)	NCBI
Rnor_6.0	2	187,513,104 - 187,541,285 (+)	NCBI

Sequence:

show sequence

TTCTTCTGAGGCCTAGCGGGTTAGCTGTGTGAGTGGTGGATCTTCTCCCTCCCCCTAGCCCTCA
GTGGGTCTGAGCTGCCTGACTGTGGGAAGTTTGCCGTCTGGGACGGTGACCTTGGGCTGCTCTG
GCCGAATCTCGGAGAGGAGCCTACTGAGTGCACTTGGCCTTGGGAGCTGTCCACCTTCTGTTCT
CTCAGTATCCGCGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGA
CATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAA
GGACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACC
GCCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCT
GTGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGC
ACCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCA
ATGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGCCGGA
TGGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGAGGAA
CTGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCA
CAGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCC
TTCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAG
AGAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAG
ACCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGC
TTCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCT
CCACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCA
TCACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGACTGAGGACCATTTAGATCTGAACAA
TGCCCAGCGCCTTGGGGTCTCCCAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGTGGCA
ACACCAAGTTTACTCAGCCAGGGCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACAGATT
ACCAGCTGCCCAGTGCAGAGCTTTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGGCACT
AGGCAACGTCACCGCCTGGCAGCAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACCGCCA
CAGTCACAGCCACAGCCACCACAGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCACTTGG
TCCCTGTTTCTCTCAGCAACCTCATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCAC
TGTCACTACCCACCCCCACATCAGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGC
CCTGCACCTCCTCCACCAGCTGTGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCA
GCCCAGCTGGAGGATCCTATGAGACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGCCCAC
ACTAGGCCTGCTGCGCCCAGCCCCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGG
CTGGATACTTGGACATTAAAGTGATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAAGAGT
TGACAATCTCACCGCCCACCCCTCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCT
TCTGCTCCATGTCCTGTTGATGGTTACATTTGTGTATAATTATATTATTATTATTATTATTGTT
ATTATTATTATATTTTTAAATTCAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCTTTCT
TGCTCCCACCATTTTCACTGATGGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTTGCAC
GTTGTACACATATGCTGCAGGAAGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGCCGAG
CCCTGCATGTGGAGCCCTCCCATCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACCCAAC
AACAAAACCCAGACAGTGGACTGAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCGGGAT
ATAGGAGGAGGTGGAGTTTCTGCTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCCTTCA
GCTTCCTGCATACATACTGCACTCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGATAGA
AAGGCTGCCTAGGATTCTGAGGCCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAACTGT
GGAGAGGGACAGCTGTAGAAAGAGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTTGGGA
CCCTACCCCCAGCTTTTCCTTTAAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTACCCC
AGCCCTAAAGAAAGCTGGCCATGTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGGCTCC
AGGTGGGCCAGAGTCATCCTGGGGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCACCTG
TGTCCAGAGAGTACACACTAGGCACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGATGAG
GCCCCTAGCCCTTCCCCAGGCCTCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTTTATG
CCCCTTGTCTCGCTACCTCCTGTCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCTTGCT
ACTGTAATTGTAAATAGAGACCTTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTTGTGT
TTGTTGTTGTTGTATTGATATGAAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAATAAT
GACTCAAATGGCCCGTCCTGTACAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTCCCAG
ACTCATGCTTTGTGGCCTCCTCAGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATTGGGT
CCTTGGGCCTCTTGCTGGATCTGAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAGCCTG
CTCTCTGTCACCATCCCTGCCCTTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGACAGC
CACACCCCCTTGGAGCTCCCTCCCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGTAGTA
AGATGGTCTTTGCCCAACTATGACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGAAGGA
GCCAGAAGCAGAGGGGTGTGAGCATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTTATGT
GTTTGTGTGCAGCTGTGCGGATGTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGTCTGT
GAGCTGGATGTGTTTACAAGGGATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCCTGGG
CTGCTCTCAGTCCCAAAACATTTTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTCCTCT
TCTCCCCACAGCCTACCTCCACCAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTGTCCA
CTAGCCCCACCCAGTCACAGTTCCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTCAAGT
TCCTCTTCCTCCTGGGAGCTTTGCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTTTTGC
CCCCCTCCTCAGTTCCTAGAGGGAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCAGGGT
GTAGTTCTGTGCTCCCCTTGAAGTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAATGGGT
TGATGACAGGTGCTCAATAAATGTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGGACTG
AGTTTGGCCACCATTATACACACAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTATTCA
ACAGTTTGCCATCTGCTTCCCGAAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCGCTTG
CACGTGGGTGTGTGGGTGTGTGGGTGTGTATCACACACACACACACACACACACACACACACAC
ACACACACACACACACACGAGTTCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTATGAA
TGAATATGTGACATTTCTGAAGTTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGGCTTC
TGGCTGGCCAGGTAAATGGATCCCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTTCCTC
TCACAAGCCAAATTTGCCTCCTATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTAGCCT
CTGGCGTCATCCAGTGCCCTTCCCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGACTGAG
GGCCACCCCCACATGCCTCAATGGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCCATCC
CTCCCCCACTCGAACAGGAAGGAAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTTGGAG
AGACAAAAATGATGGGAAAGTATCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTGGAAC
CCCCTGTGGGGGAATGTCAGCTCTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTGCCTC
TACGTAAGCGGAAGGGATGGGACATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCTGAAT
TCTCTACCCCATTCAATCCCAGAAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGCTGAC
CCACCCCCAAACTTGACAATCACCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAGTGTG
TGGCTGTTGATTTGTTTTCATTATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATTCTGC
ACATTCAGAAAAGTCCTCGAGATTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATTTGTT
GTAAAGAGGTTTACTATTAAAAGAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_017591131 ⟹ XP_017446620

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	187,511,776 - 187,541,285 (+)	NCBI

Sequence:

show sequence

AGGGGACCTGTCACAGGTAGAGGGAGCAGCGGAGCTCCCCAGGTAACCACCAGATTAGAGAACG
CGATCTGGCATCGGAGCTTTGTCACACAGCTGCGCTGTGCCTACGTCGGCCTCGAGTCTGGGGC
TGGAGGAGTTGCCTTTGGAGCCCGAAAGGAGGAAGGAAGCAAAATATCAACAACCGTCGAGGCG
GCTTGGGCGCTCGGCTGCGTCCCCGCCGCCCGCCGCCGCCGCCCCCGCGCGCACCAGGGGGTCC
CGGCCCTGTGGCGCCGCCCAGGCCGCGTGGACGCGGCGCCTTCGCTGTTCCCCGTCCGAGCTGC
GGCTTCGCGCAGCCGAGGATTCCGCGGACCGGGCCGAAGCTCCCGGCGCCGTGACACCCCGTTC
CCCCACGGGCTGGAGGCTGTGCATAGGTGTTCTGCAGACCATGAACTGAGCACTAGTCCCAGAC
ATTCATGAGCACAGTGTGAGGCTCCTGATCACCACCCAGCAGCCCCTTCCTCTCTGGCACTAAG
GACCCCTGGAGAAGATGGGGAGGAAAAAGATTCAGATCCAGCGAATCACTGATGAACGGAACCG
CCAGGTGACATTCACCAAGCGGAAGTTTGGGCTGATGAAGAAGGCCTACGAACTGAGTGTGCTG
TGCGACTGTGAGATCGCGCTCATCATCTTCAACCACTCCAACAAGCTGTTTCAGTACGCCAGCA
CCGACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGCACCAA
TGCTGACATCATTGAGACCCTGAGGAAGAAGGGTTTCAACGGCTGTGACAGCCCAGAGCCGGAT
GGGGAGGACTCACTGGAGCAGAGCCCCCTGCTGGAGGACAAGTACCGGCGGGCCAGTGAGGAAC
TGGATGGGCTCTTCAGGCGCTATGGGTCATCTGTTCCGGCCCCCAATTTTGCCATGCCTGTCAC
AGTGCCCGTGTCCAATCAGAGCTCCATGCAGTTCAGCAATCCAAGTAGCTCTCTGGTCACTCCT
TCCCTGGTGACATCATCCCTTACGGACCCACGGCTCCTGTCCCCCCAGCAGCCAGCACTACAGA
GAAACAGTGTTTCTCCGGGCCTGCCCCAGCGGCCTGCTAGTGCAGGAGCCATGCTGGGTGGAGA
CCTCAACAGTGCTAATGGAGCCTGCCCCAGCCCCGTTGGGAATGGCTACGTCAGTGCCCGGGCT
TCCCCCGGCCTCCTCCCTGTGGCCAATGGCAACGGCCTAAACAAGGTCATCCCTGCCAAGTCTC
CACCCCCACCCACCCACAACACCCAGCTTGGAGCCCCCAGCCGCAAGCCTGATCTGCGGGTCAT
CACTTCCCAGGGAGGCAAAGGGTTAATGCATCATTTGAACAATGCCCAGCGCCTTGGGGTCTCC
CAGTCTACCCACTCGCTCACCACCCCAGTGGTTTCCGTGGCAACACCAAGTTTACTCAGCCAGG
GCCTCCCCTTCTCCTCCATGCCCACTGCCTACAACACAGATTACCAGCTGCCCAGTGCAGAGCT
TTCCTCCTTACCAGCCTTCAGCTCACCTGCAGGGCTGGCACTAGGCAACGTCACCGCCTGGCAG
CAGCCCCAGCAGCCCCAGCAGCCACAACCACCACAACCGCCACAGTCACAGCCACAGCCACCAC
AGCCACAGCCACAGCAGCCACCTCAGCAACAGCCCCACTTGGTCCCTGTTTCTCTCAGCAACCT
CATCCCTGGCAGCCCCTTGCCCCATGTGGGTGCTGCTCTCACTGTCACTACCCACCCCCACATC
AGCATCAAGTCAGAACCAGTGTCCCCAAGTCGTGAACGCAGCCCTGCACCTCCTCCACCAGCTG
TGTTCCCAGCTGCCCGCCCTGAGCCTGGCGAAGGTCTCAGCAGCCCAGCTGGAGGATCCTATGA
GACCGGGGACCGGGATGATGGACGGGGGGACTTTGGGCCCACACTAGGCCTGCTGCGCCCAGCC
CCAGAGCCTGAGGCTGAGGGCTCAGCTGTGAAGAGGATGCGGCTGGATACTTGGACATTAAAGT
GATGGTTCCCACTCCCATCTCTCAGCCTCCCTGATGAAGAGTTGACAATCTCACCGCCCACCCC
TCCCTGTCCTGGGCTCCTCCCGCTCGACCCCACTTCCTTTCTTCTGCTCCATGTCCTGTTGATG
GTTACATTTGTGTATAATTATATTATTATTATTATTATTGTTATTATTATTATATTTTTAAATT
CAAATTCTCGCTTTAGAGAGAGGGATGCTCTTGCCCCTTTCTTGCTCCCACCATTTTCACTGAT
GGGGGACTCTCTTTATTGCGGGAAAGGGGGGACACTTTGCACGTTGTACACATATGCTGCAGGA
AGGGGGGGAGGCGGTAGGCCTTGGAGAAGGACAGGTGCCGAGCCCTGCATGTGGAGCCCTCCCA
TCCCATTCCCAGATAGACGTAAAGAACCAAAAACTACCCAACAACAAAACCCAGACAGTGGACT
GAAACCCAAAGCTGGCTTGATGAGGGGCTTGTGTCTCGGGATATAGGAGGAGGTGGAGTTTCTG
CTTCTGGGCAGTTCGTGGCTAATACCTATCCTGGTCCCTTCAGCTTCCTGCATACATACTGCAC
TCACTGATCCTGTGTGCTACACCCCAAGATCTGGGTGATAGAAAGGCTGCCTAGGATTCTGAGG
CCAGGGCAAGGGCTTGAGGTAGGAATCTCTAGAAGAAACTGTGGAGAGGGACAGCTGTAGAAAG
AGAGCTGAGGAGGACAGAAGGACTGGGTGTGATGACTTGGGACCCTACCCCCAGCTTTTCCTTT
AAGATGTACAGTGCAATAGCGCCCCATCCTTCAGCCTACCCCAGCCCTAAAGAAAGCTGGCCAT
GTCCTGGGAGAGTTGGGAGATGACCTTAAGTGAAGTGGCTCCAGGTGGGCCAGAGTCATCCTGG
GGCACTGAAGTCAGGAGGCCTGTCAGGGGCTTTGTGCACCTGTGTCCAGAGAGTACACACTAGG
CACATGGCATGGTCTGTGGAGCTAGAGGCTCCTGTAGATGAGGCCCCTAGCCCTTCCCCAGGCC
TCTGAGCTCCTGCCCCTGCCCCACCTCCCAGCTCTCTTTATGCCCCTTGTCTCGCTACCTCCTG
TCCCTACACCTCCAGGCCACATCCCATACCTGCCCTCTTGCTACTGTAATTGTAAATAGAGACC
TTTCAAATGTTAGTGGTGTAACAGTCCAGGAAACTGTTGTGTTTGTTGTTGTTGTATTGATATG
AAATGAGATTCTATTTTTGTCAAAGTATATTGTAATAATAATGACTCAAATGGCCCGTCCTGTA
CAGATGAGATTCTTCTGCTGTGTTCTTGCCTTCCTCTCCCAGACTCATGCTTTGTGGCCTCCTC
AGTGGGGCTGCAGCAAGACCAGGGGCAGTGGAAGCATTGGGTCCTTGGGCCTCTTGCTGGATCT
GAGGTCAAATTGGAGGGAATAGTCTGCCCCCTCCCCAGCCTGCTCTCTGTCACCATCCCTGCCC
TTCCTCTGCTTTCCCACCCAGGAAAAGGGGATGGGAGACAGCCACACCCCCTTGGAGCTCCCTC
CCAGCCGGAGGGTAGAGTTAGACAAGGCTCAGTGCTGTAGTAAGATGGTCTTTGCCCAACTATG
ACCCAGCCTTTTGTAGTATTTGACACTTGATGCAGGGAAGGAGCCAGAAGCAGAGGGGTGTGAG
CATGCTCGTGGGGGCGTATCTGGGTTCACCCTGTATTTATGTGTTTGTGTGCAGCTGTGCGGAT
GTACCTTTGAGTGACTCAAGCTCCAAGGGCCTCTGTGTCTGTGAGCTGGATGTGTTTACAAGGG
ATAGGCAGCTTCCAACTCTGTGGCTTCACTCCCCTCCCTGGGCTGCTCTCAGTCCCAAAACATT
TTACTAAAGTTTGGGGGAGGGAGTGCTAGTCGGCCTTCCTCTTCTCCCCACAGCCTACCTCCAC
CAGGGCTTCACATTTGGAGCTCTGCCTCCATACGGCTGTCCACTAGCCCCACCCAGTCACAGTT
CCATCCCTGGAGTTCTGACTTGTTTATGGAGCCAACTCAAGTTCCTCTTCCTCCTGGGAGCTTT
GCCTTCCATGGGGCAGGGACCGTCCCTTACCCAGAGTTTTGCCCCCCTCCTCAGTTCCTAGAGG
GAAGTTTTGAGACTTGCTTACGGCTTTGAAAGAAGCCAGGGTGTAGTTCTGTGCTCCCCTTGAA
GTAGCTGGCACATTATAGGCCCTTAGTAAATGCTGAATGGGTTGATGACAGGTGCTCAATAAAT
GTGGAATCACGGCTTCATCTCAGGCCTATCCTTCCTGGACTGAGTTTGGCCACCATTATACACA
CAGCTGGGGGTGAAGCCCCTATAGTTCACAGTGTGCTATTCAACAGTTTGCCATCTGCTTCCCG
AAAGCAAACCTGGCTTGTGATTGCCGTGTGTGTGCGCGCTTGCACGTGGGTGTGTGGGTGTGTG
GGTGTGTATCACACACACACACACACACACACACACACACACACACACACACACACACACGAGT
TCCTATGTGTCTCTGTCCCTGACAGTAGGGGCAGTCTATGAATGAATATGTGACATTTCTGAAG
TTCAGTATCTCCAGGTTTCTCCTGGGGCTATGTAGGGGCTTCTGGCTGGCCAGGTAAATGGATC
CCTGGGAACCCAGACCTCAAATGGGGACTTACTTTCTTCCTCTCACAAGCCAAATTTGCCTCCT
ATCCACTCCCTCTACAAAACTGGGTATTTGCCAAAGTAGCCTCTGGCGTCATCCAGTGCCCTTC
CCACCCAGGTTCCCCTCCACTTTCAGGGATAGTGGGACTGAGGGCCACCCCCACATGCCTCAAT
GGAACACATTTCCTCCATCCCCAGCAGTGTATCCACCCATCCCTCCCCCACTCGAACAGGAAGG
AAGAAATGCACCTTCTCTTGCTCATTATTTATTTGTTTGGAGAGACAAAAATGATGGGAAAGTA
TCTAAAAATCTCTCTCTCTATTTTTATGCGACTCTCTGGAACCCCCTGTGGGGGAATGTCAGCT
CTCCTGAAGGCTGGGAGCTCCTCATTCTGCCCTGTCTGCCTCTACGTAAGCGGAAGGGATGGGA
CATAATGGGACAGGAGGGCTGATTCCCAAGGAGAATCTGAATTCTCTACCCCATTCAATCCCAG
AAAGAGGGAAGAAGGGAGGGATGGGGCCAGCCAAGAGCTGACCCACCCCCAAACTTGACAATCA
CCCACACTCCTGACTCCTGGGTCTTGGGTGAGTCCAAGTGTGTGGCTGTTGATTTGTTTTCATT
ATTTCTTTCTGTGCTGTACGGTGATGCTTTCTAGTATTCTGCACATTCAGAAAAGTCCTCGAGA
TTCTTACGAGTTTGGTTTGAAAACTCTTTCACTATATTTGTTGTAAAGAGGTTTACTATTAAAA
GAAAAAAGAACATGTTTCTGATACCTCA

hide sequence

RefSeq Acc Id:

XM_039103203 ⟹ XP_038959131

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,883 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103204 ⟹ XP_038959132

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103205 ⟹ XP_038959133

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103206 ⟹ XP_038959134

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103207 ⟹ XP_038959135

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XM_039103208 ⟹ XP_038959136

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

RefSeq Acc Id:

XR_005500377

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	173,606,054 - 173,635,620 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_110487	(Get FASTA)	NCBI Sequence Viewer
	XP_006232833	(Get FASTA)	NCBI Sequence Viewer
	XP_017446616	(Get FASTA)	NCBI Sequence Viewer
	XP_017446617	(Get FASTA)	NCBI Sequence Viewer
	XP_017446619	(Get FASTA)	NCBI Sequence Viewer
	XP_038959131	(Get FASTA)	NCBI Sequence Viewer
	XP_038959132	(Get FASTA)	NCBI Sequence Viewer
	XP_038959133	(Get FASTA)	NCBI Sequence Viewer
	XP_038959134	(Get FASTA)	NCBI Sequence Viewer
	XP_038959135	(Get FASTA)	NCBI Sequence Viewer
	XP_038959136	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81790	(Get FASTA)	NCBI Sequence Viewer
	CAA06531	(Get FASTA)	NCBI Sequence Viewer
	EDM00734	(Get FASTA)	NCBI Sequence Viewer
	O89038	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_110487 ⟸ NM_030860

- UniProtKB:

O89038 (UniProtKB/Swiss-Prot), A0A0G2JSU7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFS
SMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQPPQPQPQ
QPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAA
RPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK

hide sequence

RefSeq Acc Id:

XP_006232833 ⟸ XM_006232771

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

XP_006232834 ⟸ XM_006232772

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIEALHKKHRECESPEVDEAFALTPQTEEKYKKIDEEFDKMMQSY
RLASSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSP
GLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPTH
NTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLLS
QGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQP
PQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPP
AVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTL
K

hide sequence

RefSeq Acc Id:

XP_006232835 ⟸ XM_006232773

- Peptide Label:

isoform X4

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIEALHKKHRECESPEVDEAFALTPQTEEKYKKIDEEFDKMMQSY
RLASSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSP
GLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPTH
NTQLGAPSRKPDLRVITSQGGKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSS
MPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQPPQPQPQQ
PPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAAR
PEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK

hide sequence

RefSeq Acc Id:

XP_017446617 ⟸ XM_017591128

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

XP_017446616 ⟸ XM_017591127

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

XP_017446620 ⟸ XM_017591131

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFS
SMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQPPQPQPQ
QPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAA
RPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK

hide sequence

RefSeq Acc Id:

XP_017446619 ⟸ XM_017591130

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

XP_017446618 ⟸ XM_017591129

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDK
VLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLF
RRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVS
PGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPT
HNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL
SQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQ
PPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPP
PAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWT
LK

hide sequence

RefSeq Acc Id:

ENSRNOP00000041061 ⟸ ENSRNOT00000051394

RefSeq Acc Id:	XP_038959136 ⟸ XM_039103208
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038959133 ⟸ XM_039103205
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038959132 ⟸ XM_039103204
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038959134 ⟸ XM_039103206
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038959135 ⟸ XM_039103207
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038959131 ⟸ XM_039103203
- Peptide Label:	isoform X1

Protein Domains

MADS-box

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691429

Promoter ID:

EPDNEW_R1953

Type:

initiation region

Name:

Mef2d_1

Description:

myocyte enhancer factor 2D

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	187,512,170 - 187,512,230	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	206933931	206933932	C	T	snv	SR/JrHsd (MCW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), ZFDM (KyushuU), GK/Ox (KNAW), RCS/Kyo (KyushuU), ZF (KyushuU), SR/JrHsd (KNAW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	187530914	187530915	C	T	snv	SR/JrHsd (MCW), GK/Ox (RGD), SR/JrHsd (RGD), LL/MavRrrc (RGD), LH/MavRrrc (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	180239804	180239805	C	T	snv	SR/JrHsd (MCW), GK/Ox (ICL), SR/JrHsd (ICL), LL/MavRrrc (ICL), LH/MavRrrc (ICL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621489	AgrOrtholog
Ensembl Genes	ENSRNOG00000031778	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000041061	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000051394	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.40.1810.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134848	IMAGE-MGC_LOAD
InterPro	HJURP_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MADS_MEF2-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TF_MADSbox	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TF_MADSbox_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:81518	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93400	IMAGE-MGC_LOAD
NCBI Gene	81518	ENTREZGENE
Pfam	HJURP_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SRF-TF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mef2d	PhenoGen
PRINTS	MADSDOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	MADS_BOX_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MADS_BOX_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	MADS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF55455	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JSU7	ENTREZGENE, UniProtKB/TrEMBL
	MEF2D_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q66HL8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Mef2d	myocyte enhancer factor 2D			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Mef2d	myocyte enhancer factor 2D			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_physical_interaction	interacts with mitogen-activated protein kinase (MAP kinase), ERK5/BMK1	633239
gene_product	member of the superfamily of transcription factors containing MADS domain	633239

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD