Hormad1 (HORMA domain containing 1)

Gene: Hormad1 (HORMA domain containing 1) Rattus norvegicus

Analyze

Symbol:

Hormad1

Name:

HORMA domain containing 1

RGD ID:

1564960

Description:

Predicted to be involved in several processes, including meiosis I cell cycle process; meiotic sister chromatid cohesion; and regulation of cell cycle process. Predicted to act upstream of or within homologous chromosome pairing at meiosis. Predicted to be located in cytoplasm and synaptonemal complex. Orthologous to human HORMAD1 (HORMA domain containing 1); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; furan.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

HORMA domain-containing protein 1; LOC365868; RGD1564960; similar to HORMA domain containing 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HORMAD1 (HORMA domain containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Treefam
Mus musculus (house mouse):	Hormad1 (HORMA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hormad1 (HORMA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HORMAD1 (HORMA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HORMAD1 (HORMA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hormad1 (HORMA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HORMAD1 (HORMA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HORMAD1 (HORMA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hormad1 (HORMA domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MICU3 (mitochondrial calcium uptake family member 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	HORMAD1 (HORMA domain containing 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hormad1 (HORMA domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hormad1 (HORMA domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HOP1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	him-3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PhylomeDB)
Caenorhabditis elegans (roundworm):	htp-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PhylomeDB)
Caenorhabditis elegans (roundworm):	htp-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	hormad1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder)

Related Pseudogenes:

Hormad1-ps1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	185,803,572 - 185,841,449 (+)	NCBI		GRCr8
mRatBN7.2	2	183,115,815 - 183,152,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	183,116,716 - 183,152,383 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	190,781,559 - 190,817,221 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	188,577,091 - 188,612,738 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	183,414,086 - 183,449,748 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	197,681,820 - 197,720,197 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	197,682,000 - 197,719,254 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	217,171,290 - 217,207,727 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,469,109 - 190,504,779 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	175,647,573 - 175,683,232 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

male infertility (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

5-aza-2'-deoxycytidine (ISO)

all-trans-retinoic acid (ISO)

bisphenol A (EXP)

Bisphenol A diglycidyl ether (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

Dibutyl phosphate (ISO)

epoxiconazole (ISO)

furan (EXP)

ketoconazole (EXP)

linsidomine (EXP)

mono(2-ethylhexyl) phthalate (ISO)

sodium arsenite (ISO)

Theaflavin 3,3'-digallate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst development (ISO,ISS)

homologous chromosome pairing at meiosis (ISO)

meiotic cell cycle (IEA,ISO,ISS)

meiotic DNA double-strand break formation (ISO,ISS)

meiotic recombination checkpoint signaling (ISO,ISS)

meiotic sister chromatid cohesion (ISO,ISS)

oogenesis (IEA,ISO,ISS)

regulation of homologous chromosome segregation (ISO,ISS)

spermatogenesis (IEA,ISO,ISS)

synaptonemal complex assembly (ISO,ISS)

Cellular Component

chromosome (IEA,ISO,ISS)

condensed nuclear chromosome (ISO)

cytoplasm (ISO)

nucleus (IEA,ISO,ISS)

synaptonemal complex (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19686734	PMID:19851446	PMID:21079677	PMID:21478856	PMID:22164254	PMID:22530760	PMID:22549958	PMID:22854038

Genomics

Comparative Map Data

Hormad1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	185,803,572 - 185,841,449 (+)	NCBI		GRCr8
mRatBN7.2	2	183,115,815 - 183,152,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	183,116,716 - 183,152,383 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	190,781,559 - 190,817,221 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	188,577,091 - 188,612,738 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	183,414,086 - 183,449,748 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	197,681,820 - 197,720,197 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	197,682,000 - 197,719,254 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	217,171,290 - 217,207,727 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,469,109 - 190,504,779 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	175,647,573 - 175,683,232 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

HORMAD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	150,698,060 - 150,720,895 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	150,698,060 - 150,720,895 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	150,670,536 - 150,693,371 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	148,937,166 - 148,959,976 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	147,483,614 - 147,506,425	NCBI
Celera	1	123,786,303 - 123,808,779 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	122,049,001 - 122,071,505 (-)	NCBI		HuRef
CHM1_1	1	152,066,257 - 152,088,752 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	149,822,136 - 149,844,650 (-)	NCBI		T2T-CHM13v2.0

Hormad1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	95,466,988 - 95,495,174 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	95,466,988 - 95,494,982 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	95,559,677 - 95,587,863 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	95,559,677 - 95,587,671 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	95,363,599 - 95,391,593 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	95,645,081 - 95,673,075 (+)	NCBI		MGSCv36	mm8
Celera	3	96,991,098 - 97,019,301 (+)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	40.74	NCBI

Hormad1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	132,711 - 152,720 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	130,214 - 155,381 (+)	NCBI	ChiLan1.0	ChiLan1.0

HORMAD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	99,105,140 - 99,132,248 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	98,858,838 - 98,882,673 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	126,054,585 - 126,077,361 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	129,704,287 - 129,726,691 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	129,704,451 - 129,726,691 (-)	Ensembl	panpan1.1		panPan2

HORMAD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	59,860,527 - 59,883,031 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	59,860,934 - 59,882,980 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	59,306,247 - 59,328,768 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	60,876,169 - 60,898,732 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	60,876,576 - 60,898,682 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	59,706,187 - 59,728,704 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	59,789,944 - 59,812,477 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	60,518,036 - 60,540,556 (-)	NCBI		UU_Cfam_GSD_1.0

Hormad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	21,902,830 - 21,926,483 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	933,365 - 954,486 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	933,123 - 956,201 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HORMAD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	98,449,891 - 98,469,650 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	98,447,298 - 98,469,650 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	107,698,514 - 107,718,272 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HORMAD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	12,560,724 - 12,580,628 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hormad1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	18,379,745 - 18,403,745 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	18,379,154 - 18,403,456 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hormad1
57 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	24
Count of miRNA genes:	22
Interacting mature miRNAs:	23
Transcripts:	ENSRNOT00000066821
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Markers in Region

Hormad1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	54,135,250 - 54,135,589 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	55,900,937 - 55,901,275	NCBI	Rnor6.0
Rnor_5.0	20	57,503,457 - 57,503,795	UniSTS	Rnor5.0
RGSC_v3.4	20	55,216,277 - 55,216,615	UniSTS	RGSC3.4
Cytogenetic Map	20	q13	UniSTS
Cytogenetic Map	2	q34	UniSTS

UniSTS:547513

Rat Assembly	Chr	Position (strand)	Source
Celera	20	46,035,137 - 46,035,283	UniSTS
Cytogenetic Map	20	q13	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											15
Low			2		8		2	2	9	31	19	1	2
Below cutoff	3	4	21	7	11	7	6	8	52	4	5	9	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066821 ⟹ ENSRNOP00000063863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	183,116,716 - 183,152,383 (+)	Ensembl
Rnor_6.0 Ensembl	2	197,682,000 - 197,719,254 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097125 ⟹ ENSRNOP00000081261

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	183,118,618 - 183,152,383 (+)	Ensembl

RefSeq Acc Id:

NM_001108949 ⟹ NP_001102419

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,805,672 - 185,841,333 (+)	NCBI
mRatBN7.2	2	183,116,716 - 183,152,383 (+)	NCBI
Rnor_6.0	2	197,682,000 - 197,719,254 (+)	NCBI
Rnor_5.0	2	217,171,290 - 217,207,727 (+)	NCBI
RGSC_v3.4	2	190,469,109 - 190,504,779 (+)	RGD
Celera	2	175,647,573 - 175,683,232 (+)	RGD

Sequence:

show sequence

GCCGCACTTCGAGCCTCTTCCCTGTCGCTGCTGGACGCTTCTCTCAGGCGTTGTGTAAAAAAAT
ATTTCTTGGAAGATGGCCACTATGCAGTTGCGGAGGACAGCTTCTATGAGTGCATTGGTATTTC
CTAATAAGATATCAACCGAGCAGCAGTCTTTGATGTTTGTGAAGAGGCTCCTGGCTGTTTCAGT
ATCCTGCATTACCTATTTGAGAGGAATATTTCCAGAACGTGCTTATGGGACAAGATATCTGGAT
GATCTCTGTGTCAAAATTCTGAAAGAAGATAAAAATTGTCCAGGTTCTTCACAGCTAGTTAAGT
GGATGCTAGGATGCTATGATGCTCTACAGAAGAAATATCTAAGGATGATCATTCTAGCCGTATA
TACCAATCCAGAAGATCCTCAGACAATTTCAGAATGTTACCAGTTTAAATTCAAGTACACCAAA
AATGGACCAATCATGGACTTTATAAGCAAAAATCAAAACAATAAATCTAGTACAACATCTGCTG
ACACCAAGAAAGCAAGTATTCTCCTCATTCGGAAGATTTATGTCCTAATGCAAAATCTAGGGCC
ATTACCTAATGATGTTTGTCTGACCATGAAACTTTTTTACTACGATGAAGTTACACCCCCAGAT
TACCAGCCACCAGGTTTTAAGGATGGTGATTGTGAAGGAGTAATATTTGATGGGGACCCTACAT
ACTTAAATGTGGGAGAAGTCCCAACACCTTTTCACACCTTCAGATTAAAAGTGACCACTGAGAA
GGAACGAATGGAAAATATTGATTCAGCCATACTAACACCAAAAGATTCAAAAATACCATTTCAA
AAAATTCTAATGGACAAAGATGATGTAGAAGATGAAAATCATAATAATTTTGATATTAAAACTA
AAATGAACGAACAGAATGAAAACTCTGGAACTTCTGAAATCAAAGAACCAAATTTAGATTGTAA
GGAAGAAGAAATTATGCAATTCAAAAAGAACCAAAGTTCTTCAATTTCTCAGTGTCAGGTTGAA
CAGTTAATCAGTAAAACATCTGAACTTGATGTGTCTGAAAGCAAAACAAGAAGTGGAAAAATCT
TTCAGTGTAAAATGGTAAATGGAAATCAACAAGGACAAATTTCTAAAGAAAATCGGAAGAGAAG
TCTTCGTCAATCTGGGAAAACAGTCCTTCATATCTTGGAATCTTCTAGTCAAGAGTCGGTGCTG
AAGAGAAGGAGAGTTAGTGAACCAAATGAACATACCTAAAAATTATTTTTCTTATGCAGATTAC
AGTTCTCAACATTTAAACTAACATGCTGTATTATTTGAAGGTGTGCCTTCTGTACTGCTGAAAA
TTACTTTGTAGTTCACAGTTATTAATCTAATGAAAGTTTTAGCTATTATATTGTGTCTACCTGT
GATAAATCCAAGGGAACTTTTGACTAAACAAAAATACAAATGTCATCAATTCTGCTCATATCCA
CTGAATACAACCTGCCTTCCATTTTAAAGAAAACTTTTTATAAAATGTGTTAAGTTTTAAGACC
CTCTAAAACCATTGTTTATTCTGGCATTGAAATTTTGTAAGGATTCACTTTTTACTTATGTTAA
AACTGTACCATTTAATTGGTGCTATTAAAATAATGTTTGC

hide sequence

RefSeq Acc Id:

XM_006232951 ⟹ XP_006233013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,803,572 - 185,841,449 (+)	NCBI
mRatBN7.2	2	183,116,156 - 183,152,052 (+)	NCBI
Rnor_6.0	2	197,681,820 - 197,720,197 (+)	NCBI
Rnor_5.0	2	217,171,290 - 217,207,727 (+)	NCBI

Sequence:

show sequence

CCTAACTGTAGTGAGGCCTTGGCCTGCAGGGGACAGCGCTGAAGCCTTGCTGTGAGCCTAGCTC
CCAGCAGGCCTTGCGCAGCTTTTGGCGGGAATAGTGGTCTCACCTGCGGTCAAAGGGCGTGACA
CGTGCCAGCGACAGTTAAGGCGCATGCGCATTGAGCACATGCTGACAGGAGCGCCGCACTTCGA
GCCTCTTCCCTGTCGCTGCTGGACGCTTCTCTCAGGCGTTGTGTAAAGCTTTCTCAGCATAGCC
CTCGCTGTCCTAGATCTCCCTCTGTAGACCAGGCTGGCTTCTAACTCGTAGAGATCCACCTGCT
TCTGCCTCCCAAGTACCAGGATTAAAGAAAATATTTCTTGGAAGATGGCCACTATGCAGTTGCG
GAGGACAGCTTCTATGAGTGCATTGGTATTTCCTAATAAGATATCAACCGAGCAGCAGTCTTTG
ATGTTTGTGAAGAGGCTCCTGGCTGTTTCAGTATCCTGCATTACCTATTTGAGAGGAATATTTC
CAGAACGTGCTTATGGGACAAGATATCTGGATGATCTCTGTGTCAAAATTCTGAAAGAAGATAA
AAATTGTCCAGGTTCTTCACAGCTAGTTAAGTGGATGCTAGGATGCTATGATGCTCTACAGAAG
AAATATCTAAGGATGATCATTCTAGCCGTATATACCAATCCAGAAGATCCTCAGACAATTTCAG
AATGTTACCAGTTTAAATTCAAGTACACCAAAAATGGACCAATCATGGACTTTATAAGCAAAAA
TCAAAACAATAAATCTAGTACAACATCTGCTGACACCAAGAAAGCAAGTATTCTCCTCATTCGG
AAGATTTATGTCCTAATGCAAAATCTAGGGCCATTACCTAATGATGTTTGTCTGACCATGAAAC
TTTTTTACTACGATGAAGTTACACCCCCAGATTACCAGCCACCAGGTTTTAAGGATGGTGATTG
TGAAGGAGTAATATTTGATGGGGACCCTACATACTTAAATGTGGGAGAAGTCCCAACACCTTTT
CACACCTTCAGATTAAAAGTGACCACTGAGAAGGAACGAATGGAAAATATTGATTCAGCCATAC
TAACACCAAAAGATTCAAAAATACCATTTCAAAAAATTCTAATGGACAAAGATGATGTAGAAGA
TGAAAATCATAATAATTTTGATATTAAAACTAAAATGAACGAACAGAATGAAAACTCTGGAACT
TCTGAAATCAAAGAACCAAATTTAGATTGTAAGGAAGAAGAAATTATGCAATTCAAAAAGAACC
AAAGTTCTTCAATTTCTCAGTGTCAGGTTGAACAGTTAATCAGTAAAACATCTGAACTTGATGT
GTCTGAAAGCAAAACAAGAAGTGGAAAAATCTTTCAGTGTAAAATGGTAAATGGAAATCAACAA
GGACAAATTTCTAAAGAAAATCGGAAGAGAAGTCTTCGTCAATCTGGGAAAACAGTCCTTCATA
TCTTGGAATCTTCTAGTCAAGAGTCGGTGCTGAAGAGAAGGAGAGTTAGTGAACCAAATGAACA
TACCTAAAAATTATTTTTCTTATGCAGATTACAGTTCTCAACATTTAAACTAACATGCTGTATT
ATTTGAAGGTGTGCCTTCTGTACTGCTGAAAATTACTTTGTAGTTCACAGTTATTAATCTAATG
AAAGTTTTAGCTATTATATTGTGTCTACCTGTGATAAATCCAAGGGAACTTTTGACTAAACAAA
AATACAAATGTCATCAATTCTGCTCATATCCACTGAATACAACCTGCCTTCCATTTTAAAGAAA
ACTTTTTATAAAATGTGTTAAGTTTTAAGACCCTCTAAAACCATTGTTTATTCTGGCATTGAAA
TTTTGTAAGGATTCACTTTTTACTTATGTTAAAACTGTACCATTTAATTGGTGCTATTAAAATA
ATGTTTGCTATTTTGATATAGTGTGTTATTAGCATGATGTATATGCCATACTACTTTTAAATGT
GTGTTTAGAGCAAAAAGATGATTAGAAATGGCTAATAAAAAGATTGGCATTTTACTACCATGAT
TAAGATACTCAGTGTGCAGGGTCTTTCAGGGCTTCTAATTGTTACTTAATACAGTAGAAAGTGT
TCCGCTATTAATTTTGAGAGAATTTAGGTAAGTATTATCCTACAAGAGTTGAACACATTTTAAA
ACTTTTGAATGGTAGTGTGAACAATTGCTTTGCGGAGAGATCTAGGACCTAGCCCCAGCTTGAT
ACCTGCTTCCTTTCCTTCAGGGAAGACCTAAAACTTTGATCTGTTTCTGTATTGAAATTTTAGC
AGCCATATTCCAAAATGTACACTAGCCTCAGGATTATAAAAATGCTCTGTAGGGATGTTATGTG
TGTAATTGTAGGAATGTACCCATGCTGTTCAGTGTAAACCGGATAATGTCTACAAACTGAGTCA
GATCAGGTTTTTCTAAAGGCAAAGTTAAGCCCTCAGACTTTACTCTTAGCCTTAATGTTGTTTG
GATACCAACATTTCTTTTCCAGTAGTGTCAATACAGACAGAAATACACCTGCTACACTGAAATT
GGCCAACAGAATCCTTTCGTGATTGGCAACACTTGTTATCTCACAGAATACTTTGATTGGGTGA
TTTCATTGGGGTGGGACGCAGCCTTTTTCTCGCTGCCACTGAGGTTCTTTCATTGGATATACCA
GCTGTCAGGTTGAACCCAAACCGGCCTCTTTTGGTGATGTTTGTCTGGATCGCAACACAATAGC
CGGGAGGACCACCCCTTGTAAGCTCCGATTGGCTAGACTCAAACGTAGGGGTTTCTGATTGGCT
CAATGAAGAAACACCAAGGTAGGTTGCCTAGTGATCCTGAGGAAGCTGATGTGTT

hide sequence

RefSeq Acc Id:

XM_039102781 ⟹ XP_038958709

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,803,572 - 185,841,449 (+)	NCBI
mRatBN7.2	2	183,116,156 - 183,152,052 (+)	NCBI

RefSeq Acc Id:

XM_039102782 ⟹ XP_038958710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,820,565 - 185,841,449 (+)	NCBI
mRatBN7.2	2	183,131,723 - 183,152,052 (+)	NCBI

RefSeq Acc Id:

XM_039102783 ⟹ XP_038958711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,803,572 - 185,830,402 (+)	NCBI
mRatBN7.2	2	183,115,815 - 183,141,447 (+)	NCBI

RefSeq Acc Id:

XM_063282273 ⟹ XP_063138343

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	185,803,572 - 185,841,449 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102419	(Get FASTA)	NCBI Sequence Viewer
	XP_006233013	(Get FASTA)	NCBI Sequence Viewer
	XP_038958709	(Get FASTA)	NCBI Sequence Viewer
	XP_038958710	(Get FASTA)	NCBI Sequence Viewer
	XP_038958711	(Get FASTA)	NCBI Sequence Viewer
	XP_063138343	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZWE7	(Get FASTA)	NCBI Sequence Viewer
	EDL85702	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063863.1
	ENSRNOP00000081261.1
	ENSRNOP00055045194
	ENSRNOP00060017825
	ENSRNOP00065032441

RefSeq Acc Id:

NP_001102419 ⟸ NM_001108949

- UniProtKB:

D3ZZR2 (UniProtKB/Swiss-Prot), D3ZWE7 (UniProtKB/Swiss-Prot), A0A8I5ZSL6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATMQLRRTASMSALVFPNKISTEQQSLMFVKRLLAVSVSCITYLRGIFPERAYGTRYLDDLCV
KILKEDKNCPGSSQLVKWMLGCYDALQKKYLRMIILAVYTNPEDPQTISECYQFKFKYTKNGPI
MDFISKNQNNKSSTTSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPP
GFKDGDCEGVIFDGDPTYLNVGEVPTPFHTFRLKVTTEKERMENIDSAILTPKDSKIPFQKILM
DKDDVEDENHNNFDIKTKMNEQNENSGTSEIKEPNLDCKEEEIMQFKKNQSSSISQCQVEQLIS
KTSELDVSESKTRSGKIFQCKMVNGNQQGQISKENRKRSLRQSGKTVLHILESSSQESVLKRRR
VSEPNEHT

hide sequence

RefSeq Acc Id:	XP_006233013 ⟸ XM_006232951
- Peptide Label:	isoform X1
- UniProtKB:	D3ZZR2 (UniProtKB/Swiss-Prot), D3ZWE7 (UniProtKB/Swiss-Prot), A0A8I5ZSL6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATMQLRRTASMSALVFPNKISTEQQSLMFVKRLLAVSVSCITYLRGIFPERAYGTRYLDDLCV KILKEDKNCPGSSQLVKWMLGCYDALQKKYLRMIILAVYTNPEDPQTISECYQFKFKYTKNGPI MDFISKNQNNKSSTTSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPP GFKDGDCEGVIFDGDPTYLNVGEVPTPFHTFRLKVTTEKERMENIDSAILTPKDSKIPFQKILM DKDDVEDENHNNFDIKTKMNEQNENSGTSEIKEPNLDCKEEEIMQFKKNQSSSISQCQVEQLIS KTSELDVSESKTRSGKIFQCKMVNGNQQGQISKENRKRSLRQSGKTVLHILESSSQESVLKRRR VSEPNEHT hide sequence

Ensembl Acc Id:

ENSRNOP00000063863 ⟸ ENSRNOT00000066821

RefSeq Acc Id:	XP_038958711 ⟸ XM_039102783
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038958709 ⟸ XM_039102781
- Peptide Label:	isoform X1
- UniProtKB:	D3ZWE7 (UniProtKB/Swiss-Prot), D3ZZR2 (UniProtKB/Swiss-Prot), A0A8I5ZSL6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958710 ⟸ XM_039102782
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000081261 ⟸ ENSRNOT00000097125

RefSeq Acc Id:	XP_063138343 ⟸ XM_063282273
- Peptide Label:	isoform X1
- UniProtKB:	D3ZZR2 (UniProtKB/Swiss-Prot), D3ZWE7 (UniProtKB/Swiss-Prot), A0A8I5ZSL6 (UniProtKB/TrEMBL)

Protein Domains

HORMA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWE7-F1-model_v2	AlphaFold	D3ZWE7	1-392	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691550

Promoter ID:

EPDNEW_R2075

Type:

multiple initiation site

Name:

Hormad1_1

Description:

HORMA domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	197,682,006 - 197,682,066	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564960	AgrOrtholog
BioCyc Gene	G2FUF-52089	BioCyc
Ensembl Genes	ENSRNOG00000021160	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055031559	UniProtKB/Swiss-Prot
	ENSRNOG00060013194	UniProtKB/Swiss-Prot
	ENSRNOG00065023323	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000066821.2	UniProtKB/Swiss-Prot
	ENSRNOT00000097125.1	UniProtKB/TrEMBL
	ENSRNOT00055054676	UniProtKB/Swiss-Prot
	ENSRNOT00060022491	UniProtKB/Swiss-Prot
	ENSRNOT00065039897	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.900.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	HORMA_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HORMA_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:365868	UniProtKB/Swiss-Prot
NCBI Gene	365868	ENTREZGENE
PANTHER	HORMA DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	HORMA DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	HORMA DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	HORMA DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	HORMA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Hormad1	PhenoGen
PROSITE	HORMA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021160	RatGTEx
	ENSRNOG00055031559	RatGTEx
	ENSRNOG00060013194	RatGTEx
	ENSRNOG00065023323	RatGTEx
Superfamily-SCOP	SSF56019	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZSL6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZWE7	ENTREZGENE
	D3ZZR2	ENTREZGENE
	HORM1_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	D3ZZR2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Hormad1	HORMA domain containing 1	Hormad1_predicted	HORMA domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Hormad1_predicted	HORMA domain containing 1 (predicted)	RGD1564960_predicted	similar to HORMA domain containing 1 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1564960_predicted	similar to HORMA domain containing 1 (predicted)	LOC365868	similar to HORMA domain containing 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC365868	similar to HORMA domain containing 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar