Hormad1 (HORMA domain containing 1)

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Gene: Hormad1 (HORMA domain containing 1) Chinchilla lanigera

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Symbol:

Hormad1

Name:

HORMA domain containing 1

RGD ID:

8971636

Description:

INVOLVED IN blastocyst development (ortholog); homologous chromosome pairing at meiosis (ortholog); meiotic cell cycle (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); male infertility (ortholog); FOUND IN chromosome (ortholog); condensed nuclear chromosome (ortholog); cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

HORMA domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	132,711 - 152,720 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	130,214 - 155,381 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

male infertility (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst development (ISO)

homologous chromosome pairing at meiosis (ISO)

meiotic cell cycle (ISO)

meiotic DNA double-strand break formation (ISO)

meiotic recombination checkpoint signaling (ISO)

meiotic sister chromatid cohesion (ISO)

oogenesis (ISO)

regulation of homologous chromosome segregation (ISO)

spermatogenesis (ISO)

synaptonemal complex assembly (ISO)

Cellular Component

chromosome (ISO)

condensed nuclear chromosome (ISO)

cytoplasm (ISO)

nucleus (ISO)

synaptonemal complex (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Hormad1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	132,711 - 152,720 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	130,214 - 155,381 (+)	NCBI	ChiLan1.0	ChiLan1.0

HORMAD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	150,698,060 - 150,720,895 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	150,698,060 - 150,720,895 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	150,670,536 - 150,693,371 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	148,937,166 - 148,959,976 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	147,483,614 - 147,506,425	NCBI
Celera	1	123,786,303 - 123,808,779 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	122,049,001 - 122,071,505 (-)	NCBI		HuRef
CHM1_1	1	152,066,257 - 152,088,752 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	149,822,136 - 149,844,650 (-)	NCBI		T2T-CHM13v2.0

Hormad1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	95,466,988 - 95,495,174 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	95,466,988 - 95,494,982 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	95,559,677 - 95,587,863 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	95,559,677 - 95,587,671 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	95,363,599 - 95,391,593 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	95,645,081 - 95,673,075 (+)	NCBI		MGSCv36	mm8
Celera	3	96,991,098 - 97,019,301 (+)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	40.74	NCBI

Hormad1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	185,803,572 - 185,841,449 (+)	NCBI		GRCr8
mRatBN7.2	2	183,115,815 - 183,152,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	183,116,716 - 183,152,383 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	190,781,559 - 190,817,221 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	188,577,091 - 188,612,738 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	183,414,086 - 183,449,748 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	197,681,820 - 197,720,197 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	197,682,000 - 197,719,254 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	217,171,290 - 217,207,727 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,469,109 - 190,504,779 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	175,647,573 - 175,683,232 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

HORMAD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	99,105,140 - 99,132,248 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	98,858,838 - 98,882,673 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	126,054,585 - 126,077,361 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	129,704,287 - 129,726,691 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	129,704,451 - 129,726,691 (-)	Ensembl	panpan1.1		panPan2

HORMAD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	59,860,527 - 59,883,031 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	59,860,934 - 59,882,980 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	59,306,247 - 59,328,768 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	60,876,169 - 60,898,732 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	60,876,576 - 60,898,682 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	59,706,187 - 59,728,704 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	59,789,944 - 59,812,477 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	60,518,036 - 60,540,556 (-)	NCBI		UU_Cfam_GSD_1.0

Hormad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	21,902,830 - 21,926,483 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	933,365 - 954,486 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	933,123 - 956,201 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HORMAD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	98,449,891 - 98,469,650 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	98,447,298 - 98,469,650 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	107,698,514 - 107,718,272 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HORMAD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	12,560,724 - 12,580,628 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hormad1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	18,379,745 - 18,403,745 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	18,379,154 - 18,403,456 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013511410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001232970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01013438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01013439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01013440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01209109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000018973 ⟹ ENSCLAP00000018788

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955413	132,711 - 152,720 (+)	Ensembl

RefSeq Acc Id:

XM_013511410 ⟹ XP_013366864

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	131,233 - 153,306 (+)	NCBI

Sequence:

show sequence

TTCGCGTCCAGCATCTGGCTTAAAACGGCTGCGTCGGCGCCCTCAGCAGATGAGCGCCTTGCGG
ACTCCCGGCGTGCCTTGCGCAGCTCTTGGCGGGAAAGGTGACCTCCAGCAGGGTCGAAGGTCAC
TGTTGCGCCAGGTCGTGCCGCTGGCGACCGTTGAAGGAAAGCGCATGCGCCTCAGGAGAGCGCG
TGCCGCGTCGTGCAGTTCGTCTGGTCGCCAGCTCGCCTCACACTTTACGTTGATTTAAAGAAAG
CACTTTATCAGAAGAAAGATGGCCACAGCACAGTTGCAGAGGACTTCCATGAGTACGTTGGTAT
TTCCCAGTAAGATATCAACCGAGCAGCAGTCTTTGGTGTTAGTGAAGAGGCTCCTGGCAGTTTC
AGTATCCTGCATCACATATTTGAGAGGAATATTTCCAGAGTGTGCTTATGGAACAAGATATTTA
GATGATCTTTGTGTCAAAATTCTGAGAGAAGATAAAAATTGTCCAGGATCTACACAGTTAGTGA
AATGGATGCTGGGATGCTATGATGCTTTACAAAAAAAATATCTAAGGATGGTTGTTCTAGCTGT
ATACACCAATCCAGAAGACCCTCAAACAATTTCAGAATGTTACCAGTTTAAATTCAAGTACACC
AAAAATGGACCTGTTATGGACTTTATAAGTAAAAATCAAAGCAGTGAATCTAGCATGTCATCTG
CTGACACCAAGAAAGCAAGTATTCTCCTCATTCGAAAGATTTATGTACTAATGCAAAATCTGGG
ACCTTTACCAAATGATGTTTGCTTGACCATGAAACTTTTTTACTATGATGAAGTTACACCCCCA
GATTACCAGCCTCCTGGTTTTAAGGATGGTGATTGTGAAGGAGTCACATTTGAAGGGGAGCCTA
TGTACTTAAATGTGGGAGAAGTTCCAACACCTTTTCATACCTTCAGAGTAAAAGTGACCACTGA
GAAAGAACGAATGGAAAATGTTGATTCATCTATACTATTACCAAAACGATTAAAAACACCACTT
CAGAAAATCCTGGTGGACAAAGATGACTCAGAAGATGAACAGGAGCTTTATATAAGTGATGATT
TTGACTTTGAAACTAAAATGGAAGAACAGAAAAAATACCCTGGAGCTTCTAAAACTGGAGAACC
AAATGTAATTATGGAGGAAGATGAAATTATGAGGTGTAAAGAAAGTCCAAATCTTTCAATTTCT
CATTTTCAGGTTGAACAGTTAGTTAATAAAACATCTGAACTTGATGTATCTGAAAGCAAAACAC
GAAGTGGAAAAATCTTTCAGAATAAAATGGCACATGGAAACCAACCAATTAAATCTTCTAAAGA
AACTCGGAAGAGAACTCAACCTGCATCTGGGAAAACAGTCTTCCATCACTTTGATTTTTCTAGT
CAAGAGTCTGTGCCCAAAAGGAGAAAGTTCAGTGAACCAAAGGAACATATGTAAAATTACTTTT
TCTTCTGCACATTTGGAAAGTTCTCATTATTTAAAGTAAAAAAGTGCTCTATTACTATTATAAG
GTGTGTTCTTCTCTAGCTCTGAAAATTTGTATGCAGCCTTAAGCAGTTCATATACTAAAATGAA
GTTTTTGGCCATTACATTGTGGTCCTTAATTTTACCTAAGATAAATCTAAGAATTTTGAACAAA
CCCAAAAGCACAAATGTAGCACAAATGCTGTTCTTTATCTACTCTATGTCCATCTATCTTCCAT
GTTAGTGGATGCTTTCTTTAAATCTGTATTAACTTAAAATTCTATAATGCAAACCACTTTTTGA
AGTAATGTTTATTTTGGTATTAAAACTTTGTAGGATTCACTTTTTTCCTTTTGTTAAAACTATA
CCATATAACTAGCTGTTTTTGTCATTGTGTTATTATTAAGACAATTTTCTTCTATATATTGATA
TATTGTATTGACATATATAATGTACAACTTAAAAATTGGTACTTGGCTTTTTTAAACTTTTTTT
ACTACAGGACAAAAAGATGACTGGTTTTTTAAAGACAAAATAAAATTGCTCAGTTTGGAGATTG

hide sequence

RefSeq Acc Id:

XM_013511411 ⟹ XP_013366865

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	130,214 - 153,306 (+)	NCBI

Sequence:

show sequence

ATGGTGGCACACACTTGGAATCCCAGAACTTGGGAGGCTGAGGAATGTAGAGCGGGGAAGCAAT
CGGTTTCCCGAAGACAAAGGAGACCCGAAGGTGGAAATGGAACGCGTATCGGCTCCGATTTTTT
CAGAAAGCAATCAGAAATTCATACGATGAATTAAAAGGTGACTGGGAACACTATGGTTGATTTA
AAGAAAGCACTTTATCAGAAGAAAGATGGCCACAGCACAGTTGCAGAGGACTTCCATGAGTACG
TTGGTATTTCCCAGTAAGATATCAACCGAGCAGCAGTCTTTGGTGTTAGTGAAGAGGCTCCTGG
CAGTTTCAGTATCCTGCATCACATATTTGAGAGGAATATTTCCAGAGTGTGCTTATGGAACAAG
ATATTTAGATGATCTTTGTGTCAAAATTCTGAGAGAAGATAAAAATTGTCCAGGATCTACACAG
TTAGTGAAATGGATGCTGGGATGCTATGATGCTTTACAAAAAAAATATCTAAGGATGGTTGTTC
TAGCTGTATACACCAATCCAGAAGACCCTCAAACAATTTCAGAATGTTACCAGTTTAAATTCAA
GTACACCAAAAATGGACCTGTTATGGACTTTATAAGTAAAAATCAAAGCAGTGAATCTAGCATG
TCATCTGCTGACACCAAGAAAGCAAGTATTCTCCTCATTCGAAAGATTTATGTACTAATGCAAA
ATCTGGGACCTTTACCAAATGATGTTTGCTTGACCATGAAACTTTTTTACTATGATGAAGTTAC
ACCCCCAGATTACCAGCCTCCTGGTTTTAAGGATGGTGATTGTGAAGGAGTCACATTTGAAGGG
GAGCCTATGTACTTAAATGTGGGAGAAGTTCCAACACCTTTTCATACCTTCAGAGTAAAAGTGA
CCACTGAGAAAGAACGAATGGAAAATGTTGATTCATCTATACTATTACCAAAACGATTAAAAAC
ACCACTTCAGAAAATCCTGGTGGACAAAGATGACTCAGAAGATGAACAGGAGCTTTATATAAGT
GATGATTTTGACTTTGAAACTAAAATGGAAGAACAGAAAAAATACCCTGGAGCTTCTAAAACTG
GAGAACCAAATGTAATTATGGAGGAAGATGAAATTATGAGGTGTAAAGAAAGTCCAAATCTTTC
AATTTCTCATTTTCAGGTTGAACAGTTAGTTAATAAAACATCTGAACTTGATGTATCTGAAAGC
AAAACACGAAGTGGAAAAATCTTTCAGAATAAAATGGCACATGGAAACCAACCAATTAAATCTT
CTAAAGAAACTCGGAAGAGAACTCAACCTGCATCTGGGAAAACAGTCTTCCATCACTTTGATTT
TTCTAGTCAAGAGTCTGTGCCCAAAAGGAGAAAGTTCAGTGAACCAAAGGAACATATGTAAAAT
TACTTTTTCTTCTGCACATTTGGAAAGTTCTCATTATTTAAAGTAAAAAAGTGCTCTATTACTA
TTATAAGGTGTGTTCTTCTCTAGCTCTGAAAATTTGTATGCAGCCTTAAGCAGTTCATATACTA
AAATGAAGTTTTTGGCCATTACATTGTGGTCCTTAATTTTACCTAAGATAAATCTAAGAATTTT
GAACAAACCCAAAAGCACAAATGTAGCACAAATGCTGTTCTTTATCTACTCTATGTCCATCTAT
CTTCCATGTTAGTGGATGCTTTCTTTAAATCTGTATTAACTTAAAATTCTATAATGCAAACCAC
TTTTTGAAGTAATGTTTATTTTGGTATTAAAACTTTGTAGGATTCACTTTTTTCCTTTTGTTAA
AACTATACCATATAACTAGCTGTTTTTGTCATTGTGTTATTATTAAGACAATTTTCTTCTATAT
ATTGATATATTGTATTGACATATATAATGTACAACTTAAAAATTGGTACTTGGCTTTTTTAAAC
TTTTTTTACTACAGGACAAAAAGATGACTGGTTTTTTAAAGACAAAATAAAATTGCTCAGTTTG
GAGATTG

hide sequence

RefSeq Acc Id:

XM_013511412 ⟹ XP_013366866

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	130,706 - 153,306 (+)	NCBI

Sequence:

show sequence

TAGTGAATATGAAAGCCCTTTGTCAGAGAGGACAAAATATTTATTTCACTATTTTTGATCCTGA
AAACAGGGTTCCAGTCCTTATTCTTCTCCTAATTGAGTAGCTTGAGGTAAATCTCTTTATATCT
GGGGTAGCCATTTCCTCTATAAAGACATCGAAGTTTATGAACAGTAATTATATATGTATTTATA
CTATGGATACGATTTATTTGTATATGTAACAATCGGTAAAGTAAGTTTGTACTTCTGGAAAATC
TCCAACTCCCTACCTACTATTTTGTTTCTAAATGAGATGCAGATTATTGGGACAGCTACCCATT
GTCCCCACAGGAATGTAGAGCGGGGAAGCAATCGGTTTCCCGAAGACAAAGGAGACCCGAAGGT
GGAAATGGAACGCGTATCGGCTCCGATTTTTTCAGAAAGCAATCAGAAATTCATACGATGAATT
AAAAGGTGACTGGGAACACTATGGTTGATTTAAAGAAAGCACTTTATCAGAAGAAAGATGGCCA
CAGCACAGTTGCAGAGGACTTCCATGAGTACGTTGGTATTTCCCAGTAAGATATCAACCGAGCA
GCAGTCTTTGGTGTTAGTGAAGAGGCTCCTGGCAGTTTCAGTATCCTGCATCACATATTTGAGA
GGAATATTTCCAGAGTGTGCTTATGGAACAAGATATTTAGATGATCTTTGTGTCAAAATTCTGA
GAGAAGATAAAAATTGTCCAGGATCTACACAGTTAGTGAAATGGATGCTGGGATGCTATGATGC
TTTACAAAAAAAATATCTAAGGATGGTTGTTCTAGCTGTATACACCAATCCAGAAGACCCTCAA
ACAATTTCAGAATGTTACCAGTTTAAATTCAAGTACACCAAAAATGGACCTGTTATGGACTTTA
TAAGTAAAAATCAAAGCAGTGAATCTAGCATGTCATCTGCTGACACCAAGAAAGCAAGTATTCT
CCTCATTCGAAAGATTTATGTACTAATGCAAAATCTGGGACCTTTACCAAATGATGTTTGCTTG
ACCATGAAACTTTTTTACTATGATGAAGTTACACCCCCAGATTACCAGCCTCCTGGTTTTAAGG
ATGGTGATTGTGAAGGAGTCACATTTGAAGGGGAGCCTATGTACTTAAATGTGGGAGAAGTTCC
AACACCTTTTCATACCTTCAGAGTAAAAGTGACCACTGAGAAAGAACGAATGGAAAATGTTGAT
TCATCTATACTATTACCAAAACGATTAAAAACACCACTTCAGAAAATCCTGGTGGACAAAGATG
ACTCAGAAGATGAACAGGAGCTTTATATAAGTGATGATTTTGACTTTGAAACTAAAATGGAAGA
ACAGAAAAAATACCCTGGAGCTTCTAAAACTGGAGAACCAAATGTAATTATGGAGGAAGATGAA
ATTATGAGGTGTAAAGAAAGTCCAAATCTTTCAATTTCTCATTTTCAGGTTGAACAGTTAGTTA
ATAAAACATCTGAACTTGATGTATCTGAAAGCAAAACACGAAGTGGAAAAATCTTTCAGAATAA
AATGGCACATGGAAACCAACCAATTAAATCTTCTAAAGAAACTCGGAAGAGAACTCAACCTGCA
TCTGGGAAAACAGTCTTCCATCACTTTGATTTTTCTAGTCAAGAGTCTGTGCCCAAAAGGAGAA
AGTTCAGTGAACCAAAGGAACATATGTAAAATTACTTTTTCTTCTGCACATTTGGAAAGTTCTC
ATTATTTAAAGTAAAAAAGTGCTCTATTACTATTATAAGGTGTGTTCTTCTCTAGCTCTGAAAA
TTTGTATGCAGCCTTAAGCAGTTCATATACTAAAATGAAGTTTTTGGCCATTACATTGTGGTCC
TTAATTTTACCTAAGATAAATCTAAGAATTTTGAACAAACCCAAAAGCACAAATGTAGCACAAA
TGCTGTTCTTTATCTACTCTATGTCCATCTATCTTCCATGTTAGTGGATGCTTTCTTTAAATCT
GTATTAACTTAAAATTCTATAATGCAAACCACTTTTTGAAGTAATGTTTATTTTGGTATTAAAA
CTTTGTAGGATTCACTTTTTTCCTTTTGTTAAAACTATACCATATAACTAGCTGTTTTTGTCAT
TGTGTTATTATTAAGACAATTTTCTTCTATATATTGATATATTGTATTGACATATATAATGTAC
AACTTAAAAATTGGTACTTGGCTTTTTTAAACTTTTTTTACTACAGGACAAAAAGATGACTGGT
TTTTTAAAGACAAAATAAAATTGCTCAGTTTGGAGATTG

hide sequence

RefSeq Acc Id:

XR_001232970

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	131,233 - 155,381 (+)	NCBI

Sequence:

show sequence

TTCGCGTCCAGCATCTGGCTTAAAACGGCTGCGTCGGCGCCCTCAGCAGATGAGCGCCTTGCGG
ACTCCCGGCGTGCCTTGCGCAGCTCTTGGCGGGAAAGGTGACCTCCAGCAGGGTCGAAGGTCAC
TGTTGCGCCAGGTCGTGCCGCTGGCGACCGTTGAAGGAAAGCGCATGCGCCTCAGGAGAGCGCG
TGCCGCGTCGTGCAGTTCGTCTGGTCGCCAGCTCGCCTCACACTTTACGTTGATTTAAAGAAAG
CACTTTATCAGAAGAAAGATGGCCACAGCACAGTTGCAGAGGACTTCCATGAGTACGTTGGTAT
TTCCCAGTAAGATATCAACCGAGCAGCAGTCTTTGGTGTTAGTGAAGAGGCTCCTGGCAGTTTC
AGTATCCTGCATCACATATTTGAGAGGAATATTTCCAGAGTGTGCTTATGGAACAAGATATTTA
GATGATCTTTGTGTCAAAATTCTGAGAGAAGATAAAAATTGTCCAGGATCTACACAGTTAGTGA
AATGGATGCTGGGATGCTATGATGCTTTACAAAAAAAATATCTAAGGATGGTTGTTCTAGCTGT
ATACACCAATCCAGAAGACCCTCAAACAATTTCAGAATGTTACCAGTTTAAATTCAAGTACACC
AAAAATGGACCTGTTATGGACTTTATAAGTAAAAATCAAAGCAGTGAATCTAGCATGTCATCTG
CTGACACCAAGAAAGCAAGTATTCTCCTCATTCGAAAGATTTATGTACTAATGCAAAATCTGGG
ACCTTTACCAAATGATGTTTGCTTGACCATGAAACTTTTTTACTATGATGAAGTTACACCCCCA
GATTACCAGCCTCCTGGTTTTAAGGATGGTGATTGTGAAGGAGTCACATTTGAAGGGGAGCCTA
TGTACTTAAATGTGGGAGAAGTTCCAACACCTTTTCATACCTTCAGAGTAAAAGTGACCACTGA
GAAAGAACGAATGGAAAATGTTGATTCATCTATACTATTACCAAAACGATTAAAAACACCACTT
CAGAAAATCCTGGTGGACAAAGATGACTCAGAAGATGAACAGGAGCTTTATATAAGTGATGATT
TTGACTTTGAAACTAAAATGGAAGAACAGAAAAAATACCCTGGAGCTTCTAAAACTGGAGAACC
AAATGTAATTATGGAGGAAGATGAAATTATGAGGTGTAAAGAAAGTCCAAATCTTTCAATTTCT
CATTTTCAGGTTGAACAGTTAGTTAATAAAACATCTGAACTTGATGTATCTGAAAGCAAAACAC
GAAGTGGAAAAATCTTTCAGAATAAAATGGCACATGGAAACCAACCAATTAAATCTTCTAAAGA
AACTCGGAAGAGAACTCAACCTGCATCTGGGAAAACAGTCTTCCATCACTTTGATTTTTCTAGT
CAAGAGTCTGTGCCCAAAAGGAGAAAGTTCAGTGAACCAAAGGAACATATGTAAAATTACTTTT
TCTTCTGCACATTTGGAAAGTTCTCATTATTTAAAGTAAAAAAGTGCTCTATTACTATTATAAG
GCTCTCTCATTGGATTGATCAGCTGTCATGTTGAACCTAAACCTGCCTCTTTTTTGGTGATGTT
TGTCTGGATCGCAACCTAATAGCAGGGGGAAGAGCCTCCCCTTGTAAGCTCCGATTGGCTGAAG
TCAGTCTTAGTGGTTTCTGATTGGTCCTATGAAGAAACACCAAGCATGTATTTATTGAGCAGTT
ACAGCGTTAAAGGCATTGTGCTAGTTGCTATGGAGAATATAAAACCCAAGAAGACAATACTTTG
C

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Protein Sequences


Protein RefSeqs	XP_013366864	(Get FASTA)	NCBI Sequence Viewer
	XP_013366865	(Get FASTA)	NCBI Sequence Viewer
	XP_013366866	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018788
	ENSCLAP00000018788.1

RefSeq Acc Id:

XP_013366865 ⟸ XM_013511411

- UniProtKB:

A0A8C2VX33 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATAQLQRTSMSTLVFPSKISTEQQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVK
ILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFKYTKNGPVM
DFISKNQSSESSMSSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPG
FKDGDCEGVTFEGEPMYLNVGEVPTPFHTFRVKVTTEKERMENVDSSILLPKRLKTPLQKILVD
KDDSEDEQELYISDDFDFETKMEEQKKYPGASKTGEPNVIMEEDEIMRCKESPNLSISHFQVEQ
LVNKTSELDVSESKTRSGKIFQNKMAHGNQPIKSSKETRKRTQPASGKTVFHHFDFSSQESVPK
RRKFSEPKEHM

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RefSeq Acc Id:

XP_013366866 ⟸ XM_013511412

- UniProtKB:

A0A8C2VX33 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATAQLQRTSMSTLVFPSKISTEQQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVK
ILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFKYTKNGPVM
DFISKNQSSESSMSSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPG
FKDGDCEGVTFEGEPMYLNVGEVPTPFHTFRVKVTTEKERMENVDSSILLPKRLKTPLQKILVD
KDDSEDEQELYISDDFDFETKMEEQKKYPGASKTGEPNVIMEEDEIMRCKESPNLSISHFQVEQ
LVNKTSELDVSESKTRSGKIFQNKMAHGNQPIKSSKETRKRTQPASGKTVFHHFDFSSQESVPK
RRKFSEPKEHM

hide sequence

RefSeq Acc Id:

XP_013366864 ⟸ XM_013511410

- UniProtKB:

A0A8C2VX33 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATAQLQRTSMSTLVFPSKISTEQQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVK
ILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFKYTKNGPVM
DFISKNQSSESSMSSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPG
FKDGDCEGVTFEGEPMYLNVGEVPTPFHTFRVKVTTEKERMENVDSSILLPKRLKTPLQKILVD
KDDSEDEQELYISDDFDFETKMEEQKKYPGASKTGEPNVIMEEDEIMRCKESPNLSISHFQVEQ
LVNKTSELDVSESKTRSGKIFQNKMAHGNQPIKSSKETRKRTQPASGKTVFHHFDFSSQESVPK
RRKFSEPKEHM

hide sequence

Ensembl Acc Id:

ENSCLAP00000018788 ⟸ ENSCLAT00000018973

Protein Domains

HORMA

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012872	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018973	ENTREZGENE
	ENSCLAT00000018973.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.900.10	UniProtKB/TrEMBL
InterPro	HORMA_dom	UniProtKB/TrEMBL
	HORMA_dom_sf	UniProtKB/TrEMBL
	HORMA_MeioticProgression	UniProtKB/TrEMBL
NCBI Gene	Hormad1	ENTREZGENE
PANTHER	HORMA DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	HORMA DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	HORMA	UniProtKB/TrEMBL
PROSITE	HORMA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56019	UniProtKB/TrEMBL
UniProt	A0A8C2VX33	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar