Hormad1-ps1 (HORMA domain containing 1, pseudogene 1) - Rat Genome Database

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Gene: Hormad1-ps1 (HORMA domain containing 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Hormad1-ps1
Name: HORMA domain containing 1, pseudogene 1
RGD ID: 1592289
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC294552; LOC689473; RGD1307086; similar to HORMA domain containing 1; similar to RIKEN cDNA 4921522K05
Related Functional Gene: Hormad1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82055,716,991 - 55,718,455 (-)NCBIGRCr8
mRatBN7.22054,134,853 - 54,136,407 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.02055,900,681 - 55,901,918 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02057,503,262 - 57,504,438 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42055,216,082 - 55,217,258 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2046,034,710 - 46,035,946 (+)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Hormad1-ps1
10 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat

Markers in Region
Hormad1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22054,135,250 - 54,135,589 (+)MAPPERmRatBN7.2
Rnor_6.02055,900,937 - 55,901,275NCBIRnor6.0
Rnor_5.02057,503,457 - 57,503,795UniSTSRnor5.0
RGSC_v3.42055,216,277 - 55,216,615UniSTSRGSC3.4
Cytogenetic Map20q13UniSTS
Cytogenetic Map2q34UniSTS
UniSTS:547513  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2046,035,137 - 46,035,283UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map2q34UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_597484
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02055,900,676 - 55,901,918 (-)NCBI
RefSeq Acc Id: XR_599474
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2046,034,710 - 46,035,951 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3223 BioCyc
NCBI Gene 689473 ENTREZGENE
PhenoGen Hormad1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Hormad1-ps1  HORMA domain containing 1, pseudogene 1  LOC689473  similar to HORMA domain containing 1  Symbol and Name Changed 1299863 APPROVED
2009-06-15 LOC689473  similar to HORMA domain containing 1  RGD1307086  similar to RIKEN cDNA 4921522K05   Data merged from RGD:1307086 1643240 APPROVED
2009-06-15 LOC689473  similar to HORMA domain containing 1  LOC683286  similar to HORMA domain containing 1  Data merged from RGD:1589197 1643240 APPROVED
2008-04-30 RGD1307086  similar to RIKEN cDNA 4921522K05   RGD1307086_predicted  similar to RIKEN cDNA 4921522K05 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC689473  similar to HORMA domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683286  similar to HORMA domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1307086_predicted  similar to RIKEN cDNA 4921522K05 (predicted)  LOC294552_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294552_predicted  similar to RIKEN cDNA 4921522K05 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL