HORMAD1 (HORMA domain containing 1) - Rat Genome Database

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Gene: HORMAD1 (HORMA domain containing 1) Pan paniscus
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Symbol: HORMAD1
Name: HORMA domain containing 1
RGD ID: 11920607
Description: INVOLVED IN blastocyst development (ortholog); homologous chromosome pairing at meiosis (ortholog); meiotic DNA double-strand break formation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN condensed nuclear chromosome (ortholog); cytoplasm (ortholog); synaptonemal complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HORMA domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,105,140 - 99,132,248 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,858,838 - 98,882,673 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,054,585 - 126,077,361 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,704,287 - 129,726,691 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,704,451 - 129,726,691 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
HORMAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,105,140 - 99,132,248 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,858,838 - 98,882,673 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,054,585 - 126,077,361 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,704,287 - 129,726,691 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,704,451 - 129,726,691 (-)Ensemblpanpan1.1panPan2
HORMAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,698,060 - 150,720,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,698,060 - 150,720,895 (-)EnsemblGRCh38hg38GRCh38
GRCh371150,670,536 - 150,693,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,937,166 - 148,959,976 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,483,614 - 147,506,425NCBI
Celera1123,786,303 - 123,808,779 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,049,001 - 122,071,505 (-)NCBIHuRef
CHM1_11152,066,257 - 152,088,752 (-)NCBICHM1_1
T2T-CHM13v2.01149,822,136 - 149,844,650 (-)NCBIT2T-CHM13v2.0
Hormad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,466,988 - 95,495,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,466,988 - 95,494,982 (+)EnsemblGRCm39 Ensembl
GRCm38395,559,677 - 95,587,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,559,677 - 95,587,671 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,363,599 - 95,391,593 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,645,081 - 95,673,075 (+)NCBIMGSCv36mm8
Celera396,991,098 - 97,019,301 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Hormad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,803,572 - 185,841,449 (+)NCBIGRCr8
mRatBN7.22183,115,815 - 183,152,383 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,116,716 - 183,152,383 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,781,559 - 190,817,221 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,577,091 - 188,612,738 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,414,086 - 183,449,748 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02197,681,820 - 197,720,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2197,682,000 - 197,719,254 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,171,290 - 217,207,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,469,109 - 190,504,779 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2175,647,573 - 175,683,232 (+)NCBICelera
Cytogenetic Map2q34NCBI
Hormad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413132,711 - 152,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955413130,214 - 155,381 (+)NCBIChiLan1.0ChiLan1.0
HORMAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,860,527 - 59,883,031 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,860,934 - 59,882,980 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,306,247 - 59,328,768 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,876,169 - 60,898,732 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,876,576 - 60,898,682 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,706,187 - 59,728,704 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,789,944 - 59,812,477 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,518,036 - 60,540,556 (-)NCBIUU_Cfam_GSD_1.0
Hormad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,902,830 - 21,926,483 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580933,365 - 954,486 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580933,123 - 956,201 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HORMAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,449,891 - 98,469,650 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,447,298 - 98,469,650 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,698,514 - 107,718,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HORMAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,560,724 - 12,580,628 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hormad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,379,745 - 18,403,745 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,379,154 - 18,403,456 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000007841   ⟹   ENSPPAP00000001592
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1129,704,451 - 129,726,691 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000007849   ⟹   ENSPPAP00000001595
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1129,704,842 - 129,725,337 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000007884   ⟹   ENSPPAP00000001603
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1129,704,842 - 129,725,337 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000007895   ⟹   ENSPPAP00000001608
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1129,704,842 - 129,723,339 (-)Ensembl
RefSeq Acc Id: XM_034934796   ⟹   XP_034790687
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2199,105,140 - 99,132,248 (+)NCBI
NHGRI_mPanPan1198,858,838 - 98,882,673 (+)NCBI
Mhudiblu_PPA_v01126,054,633 - 126,077,361 (-)NCBI
RefSeq Acc Id: XM_055101712   ⟹   XP_054957687
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2199,105,140 - 99,132,248 (+)NCBI
NHGRI_mPanPan1198,858,838 - 98,882,673 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034790687 (Get FASTA)   NCBI Sequence Viewer  
  XP_054957687 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001592.1
  ENSPPAP00000001595.1
  ENSPPAP00000001603.1
  ENSPPAP00000001608.1
RefSeq Acc Id: XP_034790687   ⟸   XM_034934796
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZDG5 (UniProtKB/TrEMBL),   A0A2R8ZG43 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000001592   ⟸   ENSPPAT00000007841
RefSeq Acc Id: ENSPPAP00000001595   ⟸   ENSPPAT00000007849
RefSeq Acc Id: ENSPPAP00000001608   ⟸   ENSPPAT00000007895
RefSeq Acc Id: ENSPPAP00000001603   ⟸   ENSPPAT00000007884
RefSeq Acc Id: XP_054957687   ⟸   XM_055101712
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZG43 (UniProtKB/TrEMBL)
Protein Domains
HORMA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000006843 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000007841.1 UniProtKB/TrEMBL
  ENSPPAT00000007849.1 UniProtKB/TrEMBL
  ENSPPAT00000007884.1 UniProtKB/TrEMBL
  ENSPPAT00000007895.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.900.10 UniProtKB/TrEMBL
InterPro HORMA_dom UniProtKB/TrEMBL
  HORMA_dom_sf UniProtKB/TrEMBL
NCBI Gene HORMAD1 ENTREZGENE
PANTHER HORMA DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  HORMA DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam HORMA UniProtKB/TrEMBL
PROSITE HORMA UniProtKB/TrEMBL
Superfamily-SCOP SSF56019 UniProtKB/TrEMBL
UniProt A0A2R8Z9D1_PANPA UniProtKB/TrEMBL
  A0A2R8ZDG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZG43 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZG48_PANPA UniProtKB/TrEMBL