Syt11 (synaptotagmin 11) - Rat Genome Database

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Gene: Syt11 (synaptotagmin 11) Rattus norvegicus
Analyze
Symbol: Syt11
Name: synaptotagmin 11
RGD ID: 62042
Description: Predicted to enable several functions, including beta-tubulin binding activity; phosphatidylserine binding activity; and ubiquitin protein ligase binding activity. Involved in negative regulation of cellular component organization and negative regulation of dopamine secretion. Located in several cellular components, including inhibitory synapse; postsynaptic density; and synaptic vesicle. Is active in several cellular components, including Schaffer collateral - CA1 synapse; presynaptic active zone membrane; and synaptic vesicle membrane. Orthologous to human SYT11 (synaptotagmin 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: synaptotagmin XI; synaptotagmin-11; sytXI
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22174,206,032 - 174,232,540 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,206,191 - 174,231,964 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,352,326 - 181,378,249 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02179,374,685 - 179,400,612 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02173,974,721 - 174,000,654 (-)NCBIRnor_WKY
Rnor_6.02188,112,301 - 188,138,180 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,112,286 - 188,138,177 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,511,186 - 207,537,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,874,372 - 180,897,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,823,880 - 180,847,884 (-)NCBI
Celera2168,153,180 - 168,176,598 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzoates  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
clozapine  (EXP)
cocaine  (EXP,ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
diethyl phthalate  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gamma-tocopherol  (ISO)
haloperidol  (EXP)
levonorgestrel  (ISO)
Licochalcone B  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nickel atom  (ISO)
nitrofen  (EXP)
ozone  (EXP,ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
propanal  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
temozolomide  (ISO)
testosterone undecanoate  (ISO)
thapsigargin  (ISO)
tocopherol  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The autosomal recessive juvenile Parkinson disease gene product, parkin, interacts with and ubiquitinates synaptotagmin XI. Huynh DP, etal., Hum Mol Genet. 2003 Oct 15;12(20):2587-97. Epub 2003 Aug 12.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Regulation of KIF1A-Driven Dense Core Vesicle Transport: Ca2+/CaM Controls DCV Binding and Liprin-α/TANC2 Recruits DCVs to Postsynaptic Sites. Stucchi R, etal., Cell Rep. 2018 Jul 17;24(3):685-700. doi: 10.1016/j.celrep.2018.06.071.
9. The evolutionary pressure to inactivate. A subclass of synaptotagmins with an amino acid substitution that abolishes Ca2+ binding. von Poser C, etal., J Biol Chem 1997 May 30;272(22):14314-9.
10. Synaptotagmin-11 inhibits clathrin-mediated and bulk endocytosis. Wang C, etal., EMBO Rep. 2016 Jan;17(1):47-63. doi: 10.15252/embr.201540689. Epub 2015 Nov 20.
11. Synaptotagmin-11 is a critical mediator of parkin-linked neurotoxicity and Parkinson's disease-like pathology. Wang C, etal., Nat Commun. 2018 Jan 8;9(1):81. doi: 10.1038/s41467-017-02593-y.
12. Developmental expression and subcellular distribution of synaptotagmin 11 in rat hippocampus. Yeo H, etal., Neuroscience. 2012 Dec 6;225:35-43. doi: 10.1016/j.neuroscience.2012.08.062. Epub 2012 Sep 7.
Additional References at PubMed
PMID:11171101   PMID:12477932   PMID:15340165   PMID:22871113   PMID:23303671   PMID:24882364   PMID:25063865   PMID:26450452   PMID:27278822   PMID:28686317   PMID:30808661  


Genomics

Comparative Map Data
Syt11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22174,206,032 - 174,232,540 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,206,191 - 174,231,964 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,352,326 - 181,378,249 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02179,374,685 - 179,400,612 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02173,974,721 - 174,000,654 (-)NCBIRnor_WKY
Rnor_6.02188,112,301 - 188,138,180 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,112,286 - 188,138,177 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,511,186 - 207,537,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,874,372 - 180,897,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,823,880 - 180,847,884 (-)NCBI
Celera2168,153,180 - 168,176,598 (-)NCBICelera
Cytogenetic Map2q34NCBI
SYT11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,859,567 - 155,885,199 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1155,859,567 - 155,885,199 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,829,358 - 155,854,990 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,095,924 - 154,121,470 (+)NCBINCBI36Build 36hg18NCBI36
Build 341152,642,372 - 152,667,908NCBI
Celera1128,902,166 - 128,927,893 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,190,717 - 127,215,698 (+)NCBIHuRef
CHM1_11157,225,282 - 157,251,010 (+)NCBICHM1_1
T2T-CHM13v2.01154,998,435 - 155,023,315 (+)NCBIT2T-CHM13v2.0
Syt11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,652,006 - 88,682,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,652,007 - 88,682,471 (-)EnsemblGRCm39 Ensembl
GRCm38388,744,699 - 88,775,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,744,700 - 88,775,164 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,548,623 - 88,576,521 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,831,629 - 88,858,467 (-)NCBIMGSCv36mm8
Celera388,789,281 - 88,807,170 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.96NCBI
Syt11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,054,721 - 2,074,526 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,054,720 - 2,074,526 (+)NCBIChiLan1.0ChiLan1.0
SYT11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11135,026,032 - 135,046,943 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,026,032 - 135,046,943 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01131,193,999 - 131,218,752 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SYT11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,910,102 - 41,929,020 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,912,920 - 41,929,617 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,399,356 - 41,418,052 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,777,012 - 41,795,715 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,777,014 - 41,795,668 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,557,540 - 41,576,236 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,611,188 - 41,629,888 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,895,351 - 41,914,056 (-)NCBIUU_Cfam_GSD_1.0
Syt11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,092,808 - 26,112,972 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,129,865 - 5,142,885 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365805,123,196 - 5,142,976 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,139,347 - 94,163,049 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,139,345 - 94,163,091 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,885,467 - 102,906,314 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYT11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,993,426 - 8,019,256 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,992,988 - 8,019,238 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,299,080 - 7,325,012 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,246,719 - 1,266,420 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,246,768 - 1,266,418 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Syt11
92 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:321
Count of miRNA genes:191
Interacting mature miRNAs:229
Transcripts:ENSRNOT00000027474
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072175950118Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2152413072175950118Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072175950118Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072175950118Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2152413072175950118Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072175950118Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
61473Bp19Blood pressure QTL 196.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921175950118Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
7488904Bp363Blood pressure QTL 3630.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2172982062175950118Rat

Markers in Region
BF388304  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22174,221,186 - 174,221,339 (+)MAPPERmRatBN7.2
Rnor_6.02188,127,456 - 188,127,608NCBIRnor6.0
Rnor_5.02207,526,341 - 207,526,493UniSTSRnor5.0
RGSC_v3.42180,887,068 - 180,887,220UniSTSRGSC3.4
Celera2168,165,873 - 168,166,025UniSTS
RH 3.4 Map21152.01UniSTS
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 74 26
Low 3 43 34 19 19 19 8 11 35 15 11 8
Below cutoff 22 22 22

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000027474   ⟹   ENSRNOP00000027474
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2174,206,191 - 174,231,964 (-)Ensembl
Rnor_6.0 Ensembl2188,112,286 - 188,138,177 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107218   ⟹   ENSRNOP00000091028
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2174,206,191 - 174,223,273 (-)Ensembl
RefSeq Acc Id: NM_031667   ⟹   NP_113855
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22174,208,491 - 174,231,911 (-)NCBI
Rnor_6.02188,114,760 - 188,138,180 (-)NCBI
Rnor_5.02207,511,186 - 207,537,292 (-)NCBI
RGSC_v3.42180,874,372 - 180,897,792 (-)RGD
Celera2168,153,180 - 168,176,598 (-)RGD
Sequence:
RefSeq Acc Id: XM_006232748   ⟹   XP_006232810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22174,206,032 - 174,232,540 (-)NCBI
Rnor_6.02188,112,301 - 188,138,172 (-)NCBI
Rnor_5.02207,511,186 - 207,537,292 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_113855   ⟸   NM_031667
- UniProtKB: Q505J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232810   ⟸   XM_006232748
- Peptide Label: isoform X1
- UniProtKB: Q925B6 (UniProtKB/Swiss-Prot),   O08835 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027474   ⟸   ENSRNOT00000027474
RefSeq Acc Id: ENSRNOP00000091028   ⟸   ENSRNOT00000107218
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08835-F1-model_v2 AlphaFold O08835 1-430 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691451
Promoter ID:EPDNEW_R1976
Type:initiation region
Name:Syt11_1
Description:synaptotagmin 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02188,138,200 - 188,138,260EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62042 AgrOrtholog
BioCyc Gene G2FUF-52464 BioCyc
Ensembl Genes ENSRNOG00000020279 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000027474 ENTREZGENE
  ENSRNOP00000027474.4 UniProtKB/TrEMBL
  ENSRNOP00000091028.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027474 ENTREZGENE
  ENSRNOT00000027474.4 UniProtKB/TrEMBL
  ENSRNOT00000107218.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7315033 IMAGE-MGC_LOAD
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYT11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:60568 UniProtKB/TrEMBL
MGC_CLONE MGC:105395 IMAGE-MGC_LOAD
NCBI Gene 60568 ENTREZGENE
PANTHER PTHR10024:SF115 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Syt11 PhenoGen
PRINTS C2DOMAIN UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6APP2_RAT UniProtKB/TrEMBL
  O08835 ENTREZGENE
  Q505J5 ENTREZGENE, UniProtKB/TrEMBL
  Q925B6 ENTREZGENE
  SYT11_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q925B6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Syt11  synaptotagmin 11  Syt11  synaptotagmin XI  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Syt11  synaptotagmin XI    synaptotagmin 11  Name updated 1299863 APPROVED
2002-06-10 Syt11  synaptotagmin 11      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains has a single transmembrane domain and two cytoplasmic C2-domains 730034
gene_expression mRNA highly expresed in brain 730034
gene_process may have calcium-independent function, as calcium-binding site in C2A domain appears to be inactive 730034