Syt11 (synaptotagmin 11) - Rat Genome Database

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Gene: Syt11 (synaptotagmin 11) Ictidomys tridecemlineatus
Analyze
Symbol: Syt11
Name: synaptotagmin 11
RGD ID: 12468566
Description: ENCODES a protein that exhibits beta-tubulin binding (ortholog); identical protein binding (ortholog); SNARE binding (ortholog); INVOLVED IN autophagy (ortholog); calcium ion regulated lysosome exocytosis (ortholog); establishment of vesicle localization (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN axon (ortholog); cell body (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: synaptotagmin-11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,092,808 - 26,112,972 (+)NCBI
SpeTri2.0NW_0049365805,123,196 - 5,142,976 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Syt11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,092,808 - 26,112,972 (+)NCBI
SpeTri2.0NW_0049365805,123,196 - 5,142,976 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1155,859,567 - 155,885,199 (+)EnsemblGRCh38hg38GRCh38
GRCh381155,859,502 - 155,885,199 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371155,829,358 - 155,854,990 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,095,924 - 154,121,470 (+)NCBINCBI36hg18NCBI36
Build 341152,642,372 - 152,667,908NCBI
Celera1128,902,166 - 128,927,893 (+)NCBI
Cytogenetic Map1q22NCBI
HuRef1127,190,717 - 127,215,698 (+)NCBIHuRef
CHM1_11157,225,282 - 157,251,010 (+)NCBICHM1_1
Syt11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,652,006 - 88,682,466 (-)NCBIGRCm39mm39
GRCm39 Ensembl388,652,007 - 88,682,471 (-)Ensembl
GRCm38388,744,699 - 88,775,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,744,700 - 88,775,164 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,548,623 - 88,576,521 (-)NCBIGRCm37mm9NCBIm37
MGSCv36388,831,629 - 88,858,467 (-)NCBImm8
Celera388,789,281 - 88,807,170 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.96NCBI
Syt11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22174,206,032 - 174,232,540 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2174,206,191 - 174,231,964 (-)Ensembl
Rnor_6.02188,112,301 - 188,138,180 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,112,286 - 188,138,177 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,511,186 - 207,537,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,874,372 - 180,897,792 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12180,823,880 - 180,847,884 (-)NCBI
Celera2168,153,180 - 168,176,598 (-)NCBICelera
Cytogenetic Map2q34NCBI
Syt11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,054,721 - 2,074,526 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,054,720 - 2,074,526 (+)NCBIChiLan1.0ChiLan1.0
SYT11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11135,026,032 - 135,046,943 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,026,032 - 135,046,943 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01131,193,999 - 131,218,752 (+)NCBIMhudiblu_PPA_v0panPan3
SYT11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,910,102 - 41,929,020 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,912,920 - 41,929,617 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,399,356 - 41,418,052 (-)NCBI
ROS_Cfam_1.0741,777,012 - 41,795,715 (-)NCBI
UMICH_Zoey_3.1741,557,540 - 41,576,236 (-)NCBI
UNSW_CanFamBas_1.0741,611,188 - 41,629,888 (-)NCBI
UU_Cfam_GSD_1.0741,895,351 - 41,914,056 (-)NCBI
SYT11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,139,347 - 94,163,050 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,139,345 - 94,163,091 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,885,467 - 102,906,314 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYT11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,993,426 - 8,019,256 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl207,992,988 - 8,019,238 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660387,299,080 - 7,325,012 (-)NCBIVero_WHO_p1.0
Syt11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248851,246,768 - 1,266,418 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013361100   ⟹   XP_013216554
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,092,810 - 26,112,972 (+)NCBI
SpeTri2.0NW_0049365805,123,196 - 5,142,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287690   ⟹   XP_040143624
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,092,808 - 26,112,972 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013216554 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143624 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013216554   ⟸   XM_013361100
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040143624   ⟸   XM_040287690
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene Syt11 ENTREZGENE