Etv3l (ETS variant transcription factor 3 like) - Rat Genome Database

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Gene: Etv3l (ETS variant transcription factor 3 like) Rattus norvegicus
Analyze
Symbol: Etv3l
Name: ETS variant transcription factor 3 like
RGD ID: 1562620
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ETV3L (ETS variant transcription factor 3 like); INTERACTS WITH bisphenol A; vinclozolin; 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ETS translocation variant 3-like protein; ets variant 3-like; ets variant gene 3-like; LOC499651; RGD1562620; similar to FLJ16478 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,289,442 - 175,302,347 (+)NCBIGRCr8
mRatBN7.22172,991,616 - 173,004,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2172,991,833 - 173,004,436 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,139,977 - 180,152,793 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,162,309 - 178,175,131 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02172,751,700 - 172,764,511 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02186,899,060 - 186,911,913 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2186,899,324 - 186,911,903 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,303,795 - 206,316,657 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42179,591,716 - 179,604,304 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2166,943,368 - 166,955,920 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Etv3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,289,442 - 175,302,347 (+)NCBIGRCr8
mRatBN7.22172,991,616 - 173,004,424 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2172,991,833 - 173,004,436 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,139,977 - 180,152,793 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,162,309 - 178,175,131 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02172,751,700 - 172,764,511 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02186,899,060 - 186,911,913 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2186,899,324 - 186,911,903 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,303,795 - 206,316,657 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42179,591,716 - 179,604,304 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2166,943,368 - 166,955,920 (+)NCBICelera
Cytogenetic Map2q34NCBI
ETV3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,092,043 - 157,099,808 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,092,043 - 157,112,412 (-)EnsemblGRCh38hg38GRCh38
GRCh371157,061,835 - 157,069,600 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361155,328,460 - 155,336,224 (-)NCBINCBI36Build 36hg18NCBI36
Celera1130,133,025 - 130,140,792 (-)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1128,420,120 - 128,427,886 (-)NCBIHuRef
CHM1_11158,458,229 - 158,465,994 (-)NCBICHM1_1
T2T-CHM13v2.01156,228,899 - 156,236,665 (-)NCBIT2T-CHM13v2.0
Etv3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39387,457,364 - 87,468,412 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl387,457,406 - 87,468,416 (+)EnsemblGRCm39 Ensembl
GRCm38387,549,887 - 87,561,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl387,550,099 - 87,561,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv37387,358,681 - 87,364,132 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36387,640,686 - 87,646,489 (+)NCBIMGSCv36mm8
MGSCv36388,337,358 - 88,346,483 (+)NCBIMGSCv36mm8
Celera387,587,703 - 87,593,636 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.19NCBI
Etv3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555453,121,363 - 3,132,748 (-)NCBIChiLan1.0ChiLan1.0
ETV3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2192,740,797 - 92,752,945 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1192,475,542 - 92,487,234 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01132,434,699 - 132,443,330 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11136,256,336 - 136,264,100 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1136,256,336 - 136,264,100 (-)Ensemblpanpan1.1panPan2
ETV3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1740,986,870 - 40,991,742 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl740,980,558 - 40,991,739 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha740,468,274 - 40,479,932 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0740,843,435 - 40,855,101 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl740,843,347 - 40,854,119 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1740,625,752 - 40,637,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0740,678,656 - 40,690,319 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0740,962,001 - 40,973,653 (+)NCBIUU_Cfam_GSD_1.0
Etv3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,175,706 - 27,183,010 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365806,206,656 - 6,213,243 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETV3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1493,005,259 - 93,011,259 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24101,463,709 - 101,469,951 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ETV3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1206,774,316 - 6,783,521 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl206,774,898 - 6,781,445 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,049,826 - 6,057,226 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Etv3l
38 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:463
Count of miRNA genes:217
Interacting mature miRNAs:254
Transcripts:ENSRNOT00000057490
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
61473Bp19Blood pressure QTL 196.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921175950118Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072175950118Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
7488904Bp363Blood pressure QTL 3630.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2172982062175950118Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072175950118Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2152413072175950118Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072175950118Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072175950118Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2152413072175950118Rat

Markers in Region
D2Rat155  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22172,982,062 - 172,982,266 (+)MAPPERmRatBN7.2
Rnor_6.02186,889,035 - 186,889,238NCBIRnor6.0
Rnor_5.02206,293,779 - 206,293,982UniSTSRnor5.0
RGSC_v3.42179,581,946 - 179,582,150RGDRGSC3.4
RGSC_v3.42179,581,947 - 179,582,150UniSTSRGSC3.4
RGSC_v3.12179,532,053 - 179,532,256RGD
Celera2166,933,605 - 166,933,808UniSTS
RH 3.4 Map21138.1RGD
RH 3.4 Map21138.1UniSTS
SHRSP x BN Map270.0898UniSTS
SHRSP x BN Map270.0898RGD
FHH x ACI Map276.5599RGD
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low 4 11 7
Below cutoff 1 24 4 5 2 2 21 7 2 2

Sequence


RefSeq Acc Id: ENSRNOT00000057490   ⟹   ENSRNOP00000054300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2172,991,833 - 173,004,436 (+)Ensembl
Rnor_6.0 Ensembl2186,899,324 - 186,911,903 (+)Ensembl
RefSeq Acc Id: NM_001395641   ⟹   NP_001382570
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82175,289,513 - 175,302,319 (+)NCBI
mRatBN7.22172,991,616 - 173,004,424 (+)NCBI
RefSeq Acc Id: NM_001395642   ⟹   NP_001382571
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82175,289,513 - 175,302,319 (+)NCBI
mRatBN7.22172,991,616 - 173,004,424 (+)NCBI
RefSeq Acc Id: XM_063282372   ⟹   XP_063138442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82175,289,442 - 175,302,347 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001382570 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382571 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138442 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI27526 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000054300
  ENSRNOP00000054300.4
RefSeq Acc Id: ENSRNOP00000054300   ⟸   ENSRNOT00000057490
RefSeq Acc Id: NP_001382571   ⟸   NM_001395642
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001382570   ⟸   NM_001395641
- Peptide Label: isoform 1
- UniProtKB: F7FJQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138442   ⟸   XM_063282372
- Peptide Label: isoform X1
Protein Domains
ETS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7FJQ8-F1-model_v2 AlphaFold F7FJQ8 1-238 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562620 AgrOrtholog
BioCyc Gene G2FUF-52547 BioCyc
Ensembl Genes ENSRNOG00000043511 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057490 ENTREZGENE
  ENSRNOT00000057490.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114610 IMAGE-MGC_LOAD
InterPro Ets UniProtKB/TrEMBL
  ETS_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:499651 UniProtKB/TrEMBL
MGC_CLONE MGC:156768 IMAGE-MGC_LOAD
NCBI Gene 499651 ENTREZGENE
PANTHER ETS TRANSLOCATION VARIANT 3-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR11849 UniProtKB/TrEMBL
Pfam Ets UniProtKB/TrEMBL
PhenoGen Etv3l PhenoGen
PRINTS ETSDOMAIN UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000043511 RatGTEx
SMART ETS UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0JPP2_RAT UniProtKB/TrEMBL
  F7FJQ8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-20 Etv3l  ETS variant transcription factor 3 like  Etv3l  ets variant 3-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Etv3l  ets variant 3-like  Etv3l  ets variant gene 3-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-31 Etv3l  ets variant gene 3-like  RGD1562620_predicted  similar to FLJ16478 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562620_predicted  similar to FLJ16478 protein (predicted)  LOC499651  similar to FLJ16478 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499651  similar to FLJ16478 protein      Symbol and Name status set to provisional 70820 PROVISIONAL