Tpm3 (tropomyosin 3) - Rat Genome Database

Name: Tpm3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Tpm3 (tropomyosin 3) Rattus norvegicus

Analyze

Symbol:

Tpm3

Name:

tropomyosin 3

RGD ID:

621546

Description:

Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Located in brush border. Human ortholog(s) of this gene implicated in congenital myopathy 4A and nemaline myopathy 1. Orthologous to human TPM3 (tropomyosin 3); PARTICIPATES IN dilated cardiomyopathy pathway; hypertrophic cardiomyopathy pathway; thyroid cancer pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

gamma-tropomyosin; nonmuscle tropomyosin 5; TM30nm; Tpm5; tropomyosin 3, gamma; tropomyosin alpha-3 chain; tropomyosin non-muscle; tropomyosin-3; tropomyosin-5

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TPM3 (tropomyosin 3)	RGD	RGD
Mus musculus (house mouse):	Tpm3 (tropomyosin 3, gamma)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Tpm3 (tropomyosin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100977130 (tropomyosin alpha-3 chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TPM3 (tropomyosin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tpm3 (tropomyosin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TPM3 (tropomyosin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TPM3 (tropomyosin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tpm3 (tropomyosin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TPM1 (tropomyosin 1)	HGNC	OrthoDB
Homo sapiens (human):	KLHL2 (kelch like family member 2)	HGNC	OMA
Homo sapiens (human):	TNNC1 (troponin C1, slow skeletal and cardiac type)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TPM3 (tropomyosin 3)	Alliance	DIOPT (HGNC)
Mus musculus (house mouse):	Tpm3-rs7 (tropomyosin 3, related sequence 7)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	tpm3 (tropomyosin 3)	Alliance	DIOPT (OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	lev-11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Tm1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Tm2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	TPM1	Alliance	DIOPT (OMA\|PANTHER)

Allele / Splice:

Tpm3_v1 Tpm3_v3 Tpm3_v2

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	175,517,198 - 175,545,014 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,517,226 - 175,545,013 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	182,663,687 - 182,691,187 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	180,686,074 - 180,713,576 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,286,696 - 175,314,195 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,423,534 - 189,451,340 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,423,559 - 189,451,029 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,303,994 - 182,324,994 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,254,141 - 182,273,295 (+)	NCBI
Celera	2	169,456,120 - 169,483,632 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenocarcinoma (ISO)

Animal Mammary Neoplasms (ISO)

carcinoma (ISO)

Charcot-Marie-Tooth disease type 2 (ISO)

Colonic Neoplasms (ISO)

congenital myopathy 4A (ISO)

congenital structural myopathy (ISO)

Experimental Liver Cirrhosis (ISO)

Experimental Mammary Neoplasms (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

myopathy (ISO)

nemaline myopathy (ISO)

nemaline myopathy 1 (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Stomach Neoplasms (ISO)

thyroid gland papillary carcinoma (ISO)

Thyroid Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (EXP)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (EXP)

acetamide (EXP)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

beta-hexachlorocyclohexane (ISO)

bexarotene (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (EXP)

buspirone (EXP)

butanal (ISO)

caffeine (ISO)

cannabidiol (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

ciglitazone (EXP)

ciguatoxin CTX1B (ISO)

cisplatin (EXP,ISO)

clofibrate (ISO)

clozapine (ISO)

cobalt dichloride (EXP)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dimethyl sulfoxide (EXP)

diuron (ISO)

doxorubicin (EXP,ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gallic acid (ISO)

gamma-hexachlorocyclohexane (EXP)

genistein (ISO)

gentamycin (EXP)

hyaluronic acid (EXP)

hydrazine (EXP)

hydrogen peroxide (EXP)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

levofloxacin (EXP)

lipopolysaccharide (EXP)

mesalamine (ISO)

methapyrilene (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

N-nitrosomorpholine (EXP)

N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine (EXP)

nefazodone (EXP)

nickel atom (ISO)

ochratoxin A (EXP,ISO)

ozone (ISO)

paracetamol (ISO)

PCB138 (ISO)

penconazole (ISO)

perfluorooctanoic acid (EXP)

phenethyl isothiocyanate (ISO)

PhIP (EXP)

pirinixic acid (EXP,ISO)

ranitidine (EXP)

resveratrol (ISO)

sodium arsenite (EXP,ISO)

sodium dichromate (EXP)

sodium fluoride (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

sulfasalazine (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thapsigargin (EXP)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

triticonazole (EXP)

trovafloxacin (EXP)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IBA)

muscle contraction (IBA)

Cellular Component

actin cytoskeleton (ISO)

actin filament (IBA)

brush border (IDA)

cleavage furrow (ISO)

cortical cytoskeleton (ISO)

cytoplasm (ISO)

cytoskeleton (IEA)

cytosol (IEA,ISO)

growth cone (ISO)

neuron projection (ISO)

podosome (ISO)

stress fiber (IEA,ISO)

Molecular Function

actin binding (IEA)

actin filament binding (IBA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

dilated cardiomyopathy pathway (IEA)

hypertrophic cardiomyopathy pathway (IEA)

thyroid cancer pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of novel alternatively spliced isoforms of the tropomyosin-encoding gene, TMnm, in the rat cochlea.	Beisel KW and Kennedy JE, Gene 1994 Jun 10;143(2):251-6.
2.	WNT10A/ß-catenin pathway in tumorigenesis of papillary thyroid carcinoma.	Dong T, etal., Oncol Rep. 2017 Aug;38(2):1287-1294. doi: 10.3892/or.2017.5777. Epub 2017 Jul 3.
3.	Splicing of two internal and four carboxyl-terminal alternative exons in nonmuscle tropomyosin 5 pre-mRNA is independently regulated during development.	Dufour C, etal., J Biol Chem 1998 Jul 17;273(29):18547-55.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	A mutation in the alpha tropomyosin gene TPM3 associated with autosomal dominant nemaline myopathy.	Laing NG, etal., Nat Genet. 1995 Jan;9(1):75-9.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	A new role for the architecture of microvillar actin bundles in apical retention of membrane proteins.	Revenu C, etal., Mol Biol Cell. 2012 Jan;23(2):324-36. doi: 10.1091/mbc.E11-09-0765. Epub 2011 Nov 23.
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:8674141	PMID:9473354	PMID:15068339	PMID:15888546	PMID:16236705	PMID:16765662	PMID:16854843	PMID:20131911	PMID:20458337	PMID:21036167	PMID:22749829	PMID:22871113
PMID:24625528	PMID:25369766	PMID:25931508	PMID:29476059	PMID:30053369	PMID:33341060	PMID:36880246

Genomics

Comparative Map Data

Tpm3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	175,517,198 - 175,545,014 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,517,226 - 175,545,013 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	182,663,687 - 182,691,187 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	180,686,074 - 180,713,576 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,286,696 - 175,314,195 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,423,534 - 189,451,340 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,423,559 - 189,451,029 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,303,994 - 182,324,994 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,254,141 - 182,273,295 (+)	NCBI
Celera	2	169,456,120 - 169,483,632 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

TPM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	154,155,308 - 154,192,100 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	154,155,308 - 154,194,648 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	154,127,784 - 154,164,576 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	152,394,404 - 152,431,233 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	127,199,522 - 127,236,328 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	125,491,124 - 125,527,939 (-)	NCBI		HuRef
CHM1_1	1	155,524,124 - 155,560,933 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	153,292,536 - 153,329,333 (-)	NCBI		T2T-CHM13v2.0

Tpm3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	89,979,958 - 90,008,209 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	89,979,956 - 90,008,209 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	90,072,651 - 90,100,902 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,072,649 - 90,100,902 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	89,876,616 - 89,904,526 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,158,621 - 90,186,531 (+)	NCBI		MGSCv36	mm8
Celera	3	90,109,227 - 90,137,142 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.2	NCBI

Tpm3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	715,280 - 746,575 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	715,860 - 746,580 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100977130
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	95,383,171 - 95,413,437 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	129,511,914 - 129,538,703 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	133,126,641 - 133,153,318 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	133,126,641 - 133,161,894 (-)	Ensembl	panpan1.1		panPan2

TPM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,039,360 - 43,067,297 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	43,039,382 - 43,067,296 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,535,529 - 42,557,676 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	42,909,915 - 42,937,862 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	42,885,880 - 42,937,862 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	42,694,385 - 42,716,552 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	42,747,421 - 42,769,582 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,031,793 - 43,053,953 (+)	NCBI		UU_Cfam_GSD_1.0

Tpm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,829,962 - 24,859,535 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,860,190 - 3,889,978 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936580	3,860,185 - 3,893,251 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TPM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	95,542,473 - 95,572,938 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	95,542,329 - 95,572,946 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,459,666 - 104,490,146 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TPM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	9,630,056 - 9,669,819 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	9,638,678 - 9,653,039 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	8,999,639 - 9,027,826 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tpm3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	3,109,436 - 3,139,789 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	3,109,360 - 3,139,664 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tpm3
87 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	793
Count of miRNA genes:	298
Interacting mature miRNAs:	374
Transcripts:	ENSRNOT00000023567, ENSRNOT00000023605, ENSRNOT00000029076
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	175950118	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	152413072	175950118	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	175950118	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	175950118	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	175950118	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	175950118	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
61473	Bp19	Blood pressure QTL 19	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	175950118	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
7488904	Bp363	Blood pressure QTL 363		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	172982062	175950118	Rat
61457	Niddm8	Non-insulin dependent diabetes mellitus QTL 8	4.1	0.01	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	2	174543008	175950118	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Markers in Region

RH133983

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	2	q34	UniSTS

U04541

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	175,535,863 - 175,535,990 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	189,442,192 - 189,442,318	NCBI	Rnor6.0
Rnor_5.0	2	208,875,232 - 208,875,358	UniSTS	Rnor5.0
RGSC_v3.4	2	182,316,145 - 182,316,271	UniSTS	RGSC3.4
Celera	2	169,474,783 - 169,474,909	UniSTS
Cytogenetic Map	2	q34	UniSTS

AW529957

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	175,542,718 - 175,542,893 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	189,449,045 - 189,449,219	NCBI	Rnor6.0
Rnor_5.0	2	208,882,085 - 208,882,259	UniSTS	Rnor5.0
RGSC_v3.4	2	182,322,998 - 182,323,172	UniSTS	RGSC3.4
Celera	2	169,481,636 - 169,481,810	UniSTS
RH 3.4 Map	2	1164.6	UniSTS
Cytogenetic Map	2	q34	UniSTS

RH141892

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	10	74	35	41	11	8
Low								1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001301285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001301286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_057208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_173111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF053359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF053360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF053361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L24775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L24776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L24777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S82383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X72859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000023567 ⟹ ENSRNOP00000023567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,523,702 - 175,545,013 (+)	Ensembl
Rnor_6.0 Ensembl	2	189,430,041 - 189,451,029 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000023605 ⟹ ENSRNOP00000023605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,523,752 - 175,542,897 (+)	Ensembl
Rnor_6.0 Ensembl	2	189,430,083 - 189,449,223 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000029076 ⟹ ENSRNOP00000035561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,517,226 - 175,535,991 (+)	Ensembl
Rnor_6.0 Ensembl	2	189,423,559 - 189,442,319 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101614 ⟹ ENSRNOP00000094091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,517,226 - 175,545,013 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101991 ⟹ ENSRNOP00000097306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,523,725 - 175,545,006 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112248 ⟹ ENSRNOP00000079275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,527,429 - 175,545,006 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114156 ⟹ ENSRNOP00000085183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,517,226 - 175,545,006 (+)	Ensembl

RefSeq Acc Id:

NM_001301285 ⟹ NP_001288214

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,226 - 175,535,995 (+)	NCBI
Rnor_6.0	2	189,423,559 - 189,442,323 (+)	NCBI
Celera	2	169,456,120 - 169,474,914 (+)	NCBI

Sequence:

show sequence

GACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCCAGTTCTCCAGTGTTCACAGGTGAAC
CCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAAAAAAATGCAGATGCTGAAGTTAGAC
AAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCTGAGCAGAAGCAGGCAGAAGAAAGAA
GCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGGGACAGAGGATGAGCT
GGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAAGCTGGAGCTAGCAGAGAAGAAGGCA
GCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGG
ACCGCGCCCAGGAGCGCCTCGCCACTGCTTTGCAGAAGCTGGAGGAAGCGGAGAAGGCTGCTGA
TGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCTCTAAAAGATGAAGAAAAGATGGAG
CTCCAGGAAATCCAGCTGAAGGAAGCAAAGCGCATTGCAGAAGAGGCAGACAGGAAGTATGAAG
AGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGCGCCGAGCT
GGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAATCT
CTTGAGGCTCAGGCGGAGAAGTACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTC
TTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTTTGCTGAAAGATCGGTAGCCAAACT
GGAAAAGACCATTGATGACTTGGAAGATGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATT
AGCGACGGGCTGGACCACGTCCTCAATGACATGACCTCTATATAAACTGTCACCGTTTCTGCTC
TGTTCTGGATCTACCCCCCTTTCCTTGGGGAACCCAACACCCCACTCGCTCTGGATTCCATTTG
GGTCAGCCTGGCTGGTTCCCACAGCCTTAGGACTGAAGGGCCTGGGGCGGGGCACAAAGCAATT
TACATATTTGCTTTCACCCCCATATTAAAATGTTAAGCTGCCAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001301286 ⟹ NP_001288215

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,523,752 - 175,535,995 (+)	NCBI
Rnor_6.0	2	189,430,083 - 189,442,323 (+)	NCBI
Celera	2	169,462,644 - 169,474,914 (+)	NCBI

Sequence:

show sequence

AGCAGCTGGGTAGGCACCATGGCCGGGAGCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGG
TTCTGCAGCAGCAGGCTGATGATGCGGAGGAGAGGGCTGAGCGCCTCCAGCGGGAAGTGGAGGG
AGAAAGGCGGGCCCGGGAGCAGGCTGAAGCTGAGGTGGCTTCCTTGAACCGTAGGATCCAGCTG
GTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAG
CGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCTCTAAAAGA
TGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAGAAGAGGCA
GACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATCATTGAAGGAGACTTGGAACGCACGG
AGGAACGCGCCGAGCTGGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCAC
CAACAACCTCAAATCTCTTGAGGCTCAGGCGGAGAAGTACTCTCAAAAAGAAGACAAGTATGAA
GAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTTTGCTGAAA
GATCGGTAGCCAAGCTGGAAAAGACCATTGATGACTTGGAAGATGAGCTCTATGCCCAGAAACT
GAAGTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCTCTATATAAACT
GACACCGTTTCTGCTCTGTCCTGGATCTACCCCCCTTTCCTTGGGGAACCCAACACCCCACTCG
CTCTGGATTCCATTTGGGTCAGCCTGGCTGGTTCCCACAGCCTTAGGACTGAAGGGCCTGGGGC
GGGGCACAAAGCAATTTACATATTTGCTTTCACCCCCATATTAAAATGTTAAGCTGCCAAAAAA
AAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_057208 ⟹ NP_476556

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,523,752 - 175,542,910 (+)	NCBI
Rnor_6.0	2	189,430,083 - 189,449,236 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI
RGSC_v3.4	2	182,303,994 - 182,324,994 (+)	RGD
Celera	2	169,462,644 - 169,481,827 (+)	NCBI

Sequence:

show sequence

AGCAGCTGGGTAGGCACCATGGCCGGGAGCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGG
TTCTGCAGCAGCAGGCTGATGATGCGGAGGAGAGGGCTGAGCGCCTCCAGCGGGAAGTGGAGGG
AGAAAGGCGGGCCCGGGAGCAGGCTGAAGCTGAGGTGGCTTCCTTGAACCGTAGGATCCAGCTG
GTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAG
CGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCTCTAAAAGA
TGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAGAAGAGGCA
GACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATCATTGAAGGAGACTTGGAACGCACGG
AGGAACGCGCCGAGCTGGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCAC
CAACAACCTCAAATCTCTTGAGGCTCAGGCGGAGAAGTACTCTCAAAAAGAAGACAAGTATGAA
GAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTTTGCTGAAA
GATCGGTAGCCAAGCTGGAAAAGACCATTGATGACTTGGAAGAGCGTCTCTACAGCCAACTTGA
GCGAAACCGCCTGCTTTCTAATGAGCTGAAGCTAACGCTGCATGGTCTTTGTGACTGACGGGCC
GGGCTCCCTGATGCCCAGTAAACCCACACCACTGACCTGGACCCAGCCAAAAGCTGACTGCCTT
TTAAAAAGTCACTGTTCGCCCTAAGCAAGTTGCTTTTTAATGAGGGCAGCTAGACTACTGTTGA
TTTCCTGGCAGCCCCCTTCAAGTTGCAATGGCTATTTCTATTCTAGAAGAGATTGTGGGTGATG
AAGATGGGGCCTGGGAGGTTTAGTGCAGAACTTGAAAACCGTTAGCTGCAGCCCTCTCACCTGT
ATACTGACTGTAGGGTTTGCTCACCTGCATGGTTATTTTCTAACAATAAAAACA

hide sequence

RefSeq Acc Id:

NM_173111 ⟹ NP_775134

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,523,710 - 175,544,715 (+)	NCBI
Rnor_6.0	2	189,430,041 - 189,451,041 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI
RGSC_v3.4	2	182,303,994 - 182,324,994 (+)	RGD
Celera	2	169,462,602 - 169,483,632 (+)	NCBI

Sequence:

show sequence

GCTACAACGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGAAGCAGCTGGGTAGGCACCATGG
CCGGGAGCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCTGATGA
TGCGGAGGAGAGGGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGGGCCCGGGAGCAG
GCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCG
CCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGTTGCTGATGAGAG
TGAGAGAGGTATGAAGGTGATTGAAAACCGGGCTCTAAAAGATGAAGAAAAGATGGAGCTCCAG
GAAATCCAGCTGAAGGAAGCAAAGCACATTGCAGAAGAGGCAGACAGGAAGTATGAAGAGGTGG
CTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGCGCCGAGCTGGCAGA
GTCCCGTTGCCGAGAGATGGATGAGCAGATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGT
GCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTG
ATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTTTGCTGAAAGATCGGTAGCCAAACTGGAAAA
GACCATTGATGACTTGGAAGATAAGCTGAAGTGCACCAAAGAGGAGCATCTCTGTACACAAAGG
ATGCTGGACCAGACCCTGCTGGACCTGAACGAGATGTAGACCTTCCCCATCCCTGCCCTGCCCT
GCGGCCGCTCCTCCCTCTGACCTTGACTCCGCCTGAGGCCAGCCTCCCTGAAGCTGGCTTGAAA
CTGAGGGCTGATCTTTTTAACTGAAGGCTGCTTTCCCTCCTGCCACCCCTCTTACCCCTCTTGT
CTTTTTCATCAAAACTGTGTCAGCCTCTTCCCAGAGTTCCAGCTGGAGGGTCTGAACACTCTTT
GGGAATCAATATTTAAGGGAATGTGAGCACAGCGCAAAGTGTCCTCAATGCAGTTGTGATATGC
ACATTGTGATTACTTTTTGTCTTAGCAACCATTTTAACATTCCAAGCACTTGGCAGCTTGGTGC
AGCACATCTTAGCCTAATGGATACCGTCTCTCCATGGAGGAGAAACACAGGAATGGGCCTGCTT
ACTGAGAGCCAGCAGAGCCCAGGCAGACTCCACTGTGGAGACCTCAGTGCTCTGTACCAAGTCT
TAGCCAAACAACAGGGTTCTAGGAAGTTAGCCAAAAACAAAAACCATTCCGGTCTGTGAAGGAA
AACAGCTTTGATATCTTTGAACAACTTTACACTTATTTTTAGTTTTGACTTTTTCCGTCCGATG
TGACCAAATAGGAGAGTGAGACATCTGAGACGCCCCCGCCTCCCAGGGCCCTTGTGCATGTTAG
GCCAGCGTGCTACCGTTCACCCCCAGCCCTGAGCCCGAACTTGTCTCAGCTCTACCCCTTTCCC
AACTGCTCAGAAATGGATCATGCTGCCCCTTAGTGTTGTGGTGACCTCTTAGTGTTCACCTGCC
CCAAGGGAGACGGAAAAGGAAATTATGTTTGTGCCACTGATTTAGCCACATGAAAGTCATCTCA
TTGCTCTTTCCTGAAGCTGCTGTCTCTAAAGTGCCATCTCTTTGTGCTTTGTATCAGTCAGTGC
TGGAGAAATCTTGAATAGCTTATGTTTAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232568 ⟹ XP_006232630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,207 - 175,545,014 (+)	NCBI
Rnor_6.0	2	189,423,535 - 189,451,340 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

GCTCAAACTTGGGGAAGTTTGAGTGACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCCA
GTTCTCCAGTGTTCACAGGTGAACCCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAAA
AAAATGCAGATGCTGAAGTTAGACAAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCTG
AGCAGAAGCAGGCAGAAGAAAGAAGCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGAA
GCTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAAG
CTGGAGCTAGCAGAGAAGAAGGCAGCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGA
TCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCT
GGAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCT
CTAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAG
AAGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGA
ACGCACGGAGGAACGCGCCGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAGATCAGA
CTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACA
AGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTT
TGCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATTGATGACTTGGAAGATAAGCTGAAGTGC
ACCAAAGAGGAGCATCTCTGTACACAAAGGATGCTGGACCAGACCCTGCTGGACCTGAACGAGA
TGTAGACCTTCCCCATCCCTGCCCTGCCCTGCGGCCGCTCCTCCCTCTGACCTTGACTCCGCCT
GAGGCCAGCCTCCCTGAAGCTGGCCTTGAAACTGAGGGCTGATCTTTTTAACTGAAGGCTGCTT
TCCCTCCTGCCACCCCTCTTACCCCTCTTGTCTTTTTCACAAAACTGTGTCAGCCTCTTCCCAG
AGTTCCAGCTGGAGGGCTGAACACCTTTGGGAACAATATTTAAGGGAATGTGAGCACAGCGCAA
AGTGTCCTCAATGCAGTTGTGATATGCACATTGTGATTACTTTTTGTCTTAGCAACCATTTTTA
ACATTCCAAGCACTTGTGCAGCTTGGAGCAGCACATCTTAGCCTAATGGATACCGTCTCTCCAT
GGAGGAGAAACACAGGAATGGGCCTGCCTTACTGAGAGCCAGCAGAGCCCAGGCAGACTCCACT
GTGGGAGACCTCAGTGCTCTGTACCAAGTCTTAGCCAAACAACAGGGATTCTAGGAAGTTAGCC
AAAAACAAAAACCATTCCGGTCTGTGAAGGTTTTCAGCTTTGATATCTTTGAACAACTTTACAC
TTATTTTTAGTTTTGACTTTTTCCGTCCGATGTGACCAAATAGGAGAGTGAGACATCTGAGACG
CCCCCGCCTCCCAGGGCCCTTGTGCATGTTAGGCCAGCGTGCTACCGTTCACCCCCAGCCCTGA
GCCCGAACTTGTCTCAGCTCTACCCCTTTCCCAACTGCTCAGAAATGGATCATGCTGCCCCTTA
GTGTTGTGGTGACCTCTTAGTGTTCACCTGCCCCCAAGGGAGACGGAAAAGGAAATTATGTTTG
TGCCACTGATTTAGCCACATGAAAGTCATCTCATTGCTCTTTCCTGAAGCTGCTGTCTCTAAAG
TGCCATCTCTTTGTGCTTTGTATCAGTCAGTGCTGGAGAAATCTTGAATAGCTTATGTTTAAAA
AAAAAAAAGAACTTTTTAAATTTTATATTATTTTGAAATTGTTTTTGGGGGGTTAGGTTACCTT
GGCCAACCCACTGGCTGTGAGAATTCTTTGCAGTCTATGGGCTAGTGGTGTGCTGATCTTTCAA
GTGTCCCCACCCAATTGCCATGTTCAGGTGGTTTCTTCTCAGCCTGTTAGGTGGGCGCCCTGCA
GATTCCTGGCTTGTTTGTACTCCTCCAACCGGAGAAAGAGAACCCTGTAGTGCAACTGTTTTGA
TACTGAATAGTGACAAGTGACATTTTGAATAAAGAACCAGTCCCTCCATGA

hide sequence

RefSeq Acc Id:

XM_006232569 ⟹ XP_006232631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,204 - 175,545,014 (+)	NCBI
Rnor_6.0	2	189,423,536 - 189,450,110 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

CTCAAACTTGGGGAAGTTTGAGTGACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCCAG
TTCTCCAGTGTTCACAGGTGAACCCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAAAA
AAATGCAGATGCTGAAGTTAGACAAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCTGA
GCAGAAGCAGGCAGAAGAAAGAAGCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGAAG
CTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAAGC
TGGAGCTAGCAGAGAAGAAGGCAGCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGAT
CCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTG
GAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCTC
TAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAGA
AGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAA
CGCACGGAGGAACGCGCCGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAGATCAGAC
TGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAA
GTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTTT
GCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATTGATGACTTGGAAGATGAGCTCTATGCCC
AGAAACTGAAGTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCTCTAT
ATAAGCTGAAGTGCACCAAAGAGGAGCATCTCTGTACACAAAGGATGCTGGACCAGACCCTGCT
GGACCTGAACGAGATGTAGACCTTCCCCATCCCTGCCCTGCCCTGCGGCCG

hide sequence

RefSeq Acc Id:

XM_006232570 ⟹ XP_006232632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,206 - 175,537,734 (+)	NCBI
Rnor_6.0	2	189,423,536 - 189,443,459 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

CTCAAACTTGGGGAAGTTTGAGTGACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCCAG
TTCTCCAGTGTTCACAGGTGAACCCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAAAA
AAATGCAGATGCTGAAGTTAGACAAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCTGA
GCAGAAGCAGGCAGAAGAAAGAAGCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGAAG
CTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAAGC
TGGAGCTAGCAGAGAAGAAGGCAGCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGAT
CCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTG
GAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCTC
TAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAGA
AGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAA
CGCACGGAGGAACGCGCCGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAGATCAGAC
TGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAA
GTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTTT
GCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATTGATGACTTGGAAGATGAGCTCTATGCCC
AGAAACTGAAGTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCTCTAT
ATAAACTGTCACCGTTTCTGCTCTGTTCTGGATCTACCCCCCTTTCCTTGGGGAACCCAACACC
CCACTCGCTCTGGATTCCATTTGGGTCAGCCTGGCTGGTTCCCACAGCCTTAGGACTGGAGGGC
CTGGGGCGGGGCACAAAGCAATTTACATATTTGCTTTCACCCCCATATTAAAATGTTAAGCTGC
CAAAAGCTTCGTGCCCTCCTGCATTTGTGTATTGACAAAGCTGTTGCTGCACAGACGAAGGAGC
CCTGCCGGTGTGAAGTGGGGACAGCTGGATTAGGCTTCCCCTCTCTGACTTCTGTACGATCAAA
GCTACTTTGTGTGTGTGTTTTTCTTTGTCACTTAAACTTGCTGATTAGAGTATTGTCAGAGTGA
CCAGTAAAGGCTCCTCGTGGTAGGAAGTCTGGTGCTATTCCTCAAGTCTTACTTCATTACTTGG
GAGTTCTTACATAGTCTACCCGGGCATTTTCATTCTTTTAGCCCCTCTCCTGTACAGTAAGATC
AGCAACCATTGAATTACCTCCTAATACACTCTGCCCTTTTGCCAAAGATTCAGATACTACATCC
TCAGGTACATCCTTAAAGTTGAGTAATAATATCATCCTGGCTCACAGAAGAACGTGTAGCATGG
TGGGTTGGATTCTTGACAGACGGGTGTTTCGTCTCCAAACTTTTCTCACTCACTTGAGGCTGCT
GCTGTTTGTTCTGCTTTGCTCTATGGTGAGGTAGCAAGCGCGTGGTGAATAATGGGAAAAAGAA
CCAATCGTGCATATTCCAAACAACGTACACACGAGGGTAATGACTTACTATTAAATGTCTACTA
GTGAGATTCTTGTTATGTACTGTAGAATTCAATCTCAACACTACACAGATAGATGTTCCAGTTT
ATACACAAGATAAATTTGGTATCACAGCTAAATACTGCATAGTATTTCAGTTTTCAGTATCCGG
GGCTACAAATGTGGCACTGGGAGAGTGTCCACCCAAGGTACACAAGGCTCTGAGTTTGAAACCC
AGTACCACAAAGAGAGAAAGGGAAGGTATAGCTACATAGAGAAGTTCTCTACCAAGCCAGATTC
CTTTGCCTACACATTCCTGCCACATAGCCTTTGAGATTAAGGAGAGATTGGTTTACTTGGCAGG
TCCTGGTGTTTTCTAGCTCTCCTGTCCTGATAGATAAGTGCAGCTGAGGAGCCTCCTTCACACA
GGCTGCTCTGAGTCTACAGGGTAAGCCCTAGGTTGAAGCTGCTGTGTGAGCCGCAATTAGTAAA
GTGTGAGGTGCTAATTGGGAGGGGAACTGGCTTCATGATGACCCCCCCCCCCC

hide sequence

RefSeq Acc Id:

XM_006232571 ⟹ XP_006232633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,204 - 175,534,950 (+)	NCBI
Rnor_6.0	2	189,423,535 - 189,441,278 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

GCTCAAACTTGGGGAAGTTTGAGTGACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCCA
GTTCTCCAGTGTTCACAGGTGAACCCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAAA
AAAATGCAGATGCTGAAGTTAGACAAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCTG
AGCAGAAGCAGGCAGAAGAAAGAAGCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGAA
GCTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAAG
CTGGAGCTAGCAGAGAAGAAGGCAGCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGA
TCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCT
GGAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCT
CTAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAG
AAGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGA
ACGCACGGAGGAACGCGCCGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAGATCAGA
CTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACA
AGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTT
TGCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATTGATGACTTGGAAGATGAGCTCTATGCC
CAGAAACTGAAGTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCTCTA
TGTAA

hide sequence

RefSeq Acc Id:

XM_006232572 ⟹ XP_006232634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,204 - 175,545,014 (+)	NCBI
Rnor_6.0	2	189,423,535 - 189,451,340 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

GCTCAAACTTGGGGAAGTTTGAGTGACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCCA
GTTCTCCAGTGTTCACAGGTGAACCCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAAA
AAAATGCAGATGCTGAAGTTAGACAAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCTG
AGCAGAAGCAGGCAGAAGAAAGAAGCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGAA
GCTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAAG
CTGGAGCTAGCAGAGAAGAAGGCAGCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGA
TCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCT
GGAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCT
CTAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAG
AAGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGA
ACGCACGGAGGAACGCGCCGAGCTGGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAG
AATGTCACCAACAACCTCAAATCTCTTGAGGCTCAGGCGGAGAAGTACTCTCAAAAAGAAGACA
AGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTT
TGCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATTGATGACTTGGAAGATAAGCTGAAGTGC
ACCAAAGAGGAGCATCTCTGTACACAAAGGATGCTGGACCAGACCCTGCTGGACCTGAACGAGA
TGTAGACCTTCCCCATCCCTGCCCTGCCCTGCGGCCGCTCCTCCCTCTGACCTTGACTCCGCCT
GAGGCCAGCCTCCCTGAAGCTGGCCTTGAAACTGAGGGCTGATCTTTTTAACTGAAGGCTGCTT
TCCCTCCTGCCACCCCTCTTACCCCTCTTGTCTTTTTCACAAAACTGTGTCAGCCTCTTCCCAG
AGTTCCAGCTGGAGGGCTGAACACCTTTGGGAACAATATTTAAGGGAATGTGAGCACAGCGCAA
AGTGTCCTCAATGCAGTTGTGATATGCACATTGTGATTACTTTTTGTCTTAGCAACCATTTTTA
ACATTCCAAGCACTTGTGCAGCTTGGAGCAGCACATCTTAGCCTAATGGATACCGTCTCTCCAT
GGAGGAGAAACACAGGAATGGGCCTGCCTTACTGAGAGCCAGCAGAGCCCAGGCAGACTCCACT
GTGGGAGACCTCAGTGCTCTGTACCAAGTCTTAGCCAAACAACAGGGATTCTAGGAAGTTAGCC
AAAAACAAAAACCATTCCGGTCTGTGAAGGTTTTCAGCTTTGATATCTTTGAACAACTTTACAC
TTATTTTTAGTTTTGACTTTTTCCGTCCGATGTGACCAAATAGGAGAGTGAGACATCTGAGACG
CCCCCGCCTCCCAGGGCCCTTGTGCATGTTAGGCCAGCGTGCTACCGTTCACCCCCAGCCCTGA
GCCCGAACTTGTCTCAGCTCTACCCCTTTCCCAACTGCTCAGAAATGGATCATGCTGCCCCTTA
GTGTTGTGGTGACCTCTTAGTGTTCACCTGCCCCCAAGGGAGACGGAAAAGGAAATTATGTTTG
TGCCACTGATTTAGCCACATGAAAGTCATCTCATTGCTCTTTCCTGAAGCTGCTGTCTCTAAAG
TGCCATCTCTTTGTGCTTTGTATCAGTCAGTGCTGGAGAAATCTTGAATAGCTTATGTTTAAAA
AAAAAAAAGAACTTTTTAAATTTTATATTATTTTGAAATTGTTTTTGGGGGGTTAGGTTACCTT
GGCCAACCCACTGGCTGTGAGAATTCTTTGCAGTCTATGGGCTAGTGGTGTGCTGATCTTTCAA
GTGTCCCCACCCAATTGCCATGTTCAGGTGGTTTCTTCTCAGCCTGTTAGGTGGGCGCCCTGCA
GATTCCTGGCTTGTTTGTACTCCTCCAACCGGAGAAAGAGAACCCTGTAGTGCAACTGTTTTGA
TACTGAATAGTGACAAGTGACATTTTGAATAAAGAACCAGTCCCTCCATGA

hide sequence

RefSeq Acc Id:

XM_006232573 ⟹ XP_006232635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,199 - 175,545,014 (+)	NCBI
Rnor_6.0	2	189,423,534 - 189,450,110 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

GGCTCAAACTTGGGGAAGTTTGAGTGACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCC
AGTTCTCCAGTGTTCACAGGTGAACCCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAA
AAAAATGCAGATGCTGAAGTTAGACAAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCT
GAGCAGAAGCAGGCAGAAGAAAGAAGCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGA
AGCTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAA
GCTGGAGCTAGCAGAGAAGAAGGCAGCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGG
ATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGC
TGGAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGC
TCTAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCA
GAAGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGG
AACGCACGGAGGAACGCGCCGAGCTGGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAA
GAATGTCACCAACAACCTCAAATCTCTTGAGGCTCAGGCGGAGAAGTACTCTCAAAAAGAAGAC
AAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGT
TTGCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATTGATGACTTGGAAGATGAGCTCTATGC
CCAGAAACTGAAGTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCTCT
ATATAAGCTGAAGTGCACCAAAGAGGAGCATCTCTGTACACAAAGGATGCTGGACCAGACCCTG
CTGGACCTGAACGAGATGTAGACCTTCCCCATCCCTGCCCTGCCCTGCGGCCG

hide sequence

RefSeq Acc Id:

XM_006232576 ⟹ XP_006232638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,203 - 175,542,924 (+)	NCBI
Rnor_6.0	2	189,423,536 - 189,449,989 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

CTCAAACTTGGGGAAGTTTGAGTGACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCCAG
TTCTCCAGTGTTCACAGGTGAACCCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAAAA
AAATGCAGATGCTGAAGTTAGACAAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCTGA
GCAGAAGCAGGCAGAAGAAAGAAGCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGAAG
CTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAAGC
TGGAGCTAGCAGAGAAGAAGGCAGCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGAT
CCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTG
GAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCTC
TAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAGA
AGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAA
CGCACGGAGGAACGCGCCGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAGATCAGAC
TGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAA
GTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTTT
GCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATTGATGACTTGGAAGAGCGTCTCTACAGCC
AACTTGAGCGAAACCGCCTGCTTTCTAATGAGCTGAAGCTAACGCTGCATGGTCTTTGTGACTG
ACGGGCAGGGCTCCCTGATGCCCAGTAAACCCACACCACTGACCTGGACCCAGCCAAAAGCTGA
CTGCCTTTTAAAAAGTCACTGTTCGCCCTAAGCAAGTTGCTTTTTAATGAGGGCAGCTAGACTA
CTGTTGATTTCCTGGCAGCCCCCTTCAAGTTGCAATGGCTATTTCTATTCTAGAAGAGATTGTG
GGTGATGAAGATGGGGCCTGGGAGGTTTAGTGCGGAACTTGGAAACCGTTAGCTGCAGCCCTCT
CACCTGTATACTGACTGTAGGGTTTGCTCACCTGCATGGTTATTTTCTAACAATAAAAACACTG
ACTTGACAAGATGTTGTAGCTGCTTCATCTGCAGGCCCAGGGACGGGCTCTTCTGACTGGGTGG
AAATGGGGATGGGAAAGACGGGTGTGTGCTGTGAAAATGGCCTGATTTGCGCGTTTTCTTCCCT
GAAGCTCTGTGGTTTACTTGCTAAGCAGGTGAATGCTTGGTGTCCCTCCACTGGCTTTCTTCCT
GATAGTTTTCCTTCTTGCTGCTTTTGTGTTTAGTTGTAAGTCACTGTCTGGGTCAGCTCTGTTA
ATAACTCTGCTAAAATCTCAATGGGGTTCTACTTAACAAGAATGCACCTGGGTAGTATTCCTGA
CTTAAACCTGAGGGCTCCTGTCCTCCCCACTTTGAAGAAGGTACCTACTGTAGGAGGATCTTGT
GCTCTTTACCTGAGATTTTGATCTGTCCTTGTCTGCTGTGGTCTTACTCTACTGTAGCATTTCA
AGTAGGTAATGACCTTCGGACAGAGCCAAAGAGTGGGTGGGTGCCTGGTGCTTTCTGCCGGATC
CTCTGGAGACTGAAAGCTGAATACCTTTTGGTTGCTTGTGGGAGGGAGAGGAAATGATAGATAA
GCCCAGTTCCCTCCCCCAGGTAGTAGAGAAAGTCCTTGGCTTTCAATAAGCAAGCCGGAGGTGC
CACCGAACCCAGGGGTGTGGTAGCTGCCTCCTGTAACTTTTTTGCAACTGGAACAAGTCTCAGA
ATGGGGAGAACTTGGAACCTTGTATAACGCTCTTCTTTATTATTCC

hide sequence

RefSeq Acc Id:

XM_006232577 ⟹ XP_006232639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,198 - 175,542,924 (+)	NCBI
Rnor_6.0	2	189,423,534 - 189,449,989 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

GGCTCAAACTTGGGGAAGTTTGAGTGACCCAGGCAGCAGCCCTTCCTTTCTGGCTCTAGCCTCC
AGTTCTCCAGTGTTCACAGGTGAACCCACCAACAGTCACAGCTCATGATGGAGGCCATCAAGAA
AAAAATGCAGATGCTGAAGTTAGACAAAGAGAATGTCCTGGACCGAGCTGAGCAAGCTGAAGCT
GAGCAGAAGCAGGCAGAAGAAAGAAGCAAACAGCTAGAGGATGAACTAGCAACCATGCAGAAGA
AGCTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAA
GCTGGAGCTAGCAGAGAAGAAGGCAGCGGATGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGG
ATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGC
TGGAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGC
TCTAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCA
GAAGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGG
AACGCACGGAGGAACGCGCCGAGCTGGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAA
GAATGTCACCAACAACCTCAAATCTCTTGAGGCTCAGGCGGAGAAGTACTCTCAAAAAGAAGAC
AAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGT
TTGCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATTGATGACTTGGAAGAGCGTCTCTACAG
CCAACTTGAGCGAAACCGCCTGCTTTCTAATGAGCTGAAGCTAACGCTGCATGGTCTTTGTGAC
TGACGGGCAGGGCTCCCTGATGCCCAGTAAACCCACACCACTGACCTGGACCCAGCCAAAAGCT
GACTGCCTTTTAAAAAGTCACTGTTCGCCCTAAGCAAGTTGCTTTTTAATGAGGGCAGCTAGAC
TACTGTTGATTTCCTGGCAGCCCCCTTCAAGTTGCAATGGCTATTTCTATTCTAGAAGAGATTG
TGGGTGATGAAGATGGGGCCTGGGAGGTTTAGTGCGGAACTTGGAAACCGTTAGCTGCAGCCCT
CTCACCTGTATACTGACTGTAGGGTTTGCTCACCTGCATGGTTATTTTCTAACAATAAAAACAC
TGACTTGACAAGATGTTGTAGCTGCTTCATCTGCAGGCCCAGGGACGGGCTCTTCTGACTGGGT
GGAAATGGGGATGGGAAAGACGGGTGTGTGCTGTGAAAATGGCCTGATTTGCGCGTTTTCTTCC
CTGAAGCTCTGTGGTTTACTTGCTAAGCAGGTGAATGCTTGGTGTCCCTCCACTGGCTTTCTTC
CTGATAGTTTTCCTTCTTGCTGCTTTTGTGTTTAGTTGTAAGTCACTGTCTGGGTCAGCTCTGT
TAATAACTCTGCTAAAATCTCAATGGGGTTCTACTTAACAAGAATGCACCTGGGTAGTATTCCT
GACTTAAACCTGAGGGCTCCTGTCCTCCCCACTTTGAAGAAGGTACCTACTGTAGGAGGATCTT
GTGCTCTTTACCTGAGATTTTGATCTGTCCTTGTCTGCTGTGGTCTTACTCTACTGTAGCATTT
CAAGTAGGTAATGACCTTCGGACAGAGCCAAAGAGTGGGTGGGTGCCTGGTGCTTTCTGCCGGA
TCCTCTGGAGACTGAAAGCTGAATACCTTTTGGTTGCTTGTGGGAGGGAGAGGAAATGATAGAT
AAGCCCAGTTCCCTCCCCCAGGTAGTAGAGAAAGTCCTTGGCTTTCAATAAGCAAGCCGGAGGT
GCCACCGAACCCAGGGGTGTGGTAGCTGCCTCCTGTAACTTTTTTGCAACTGGAACAAGTCTCA
GAATGGGGAGAACTTGGAACCTTGTATAACGCTCTTCTTTATTATTCC

hide sequence

RefSeq Acc Id:

XM_006232580 ⟹ XP_006232642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,523,329 - 175,534,950 (+)	NCBI
Rnor_6.0	2	189,429,984 - 189,441,278 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

CGGGTGAGTGAGTTCCGGTATTTCAGGGCGGAGCAGGCGGAAGTAGGGTGAAAAGCGGCTACAA
CGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGAAGCAGCTGGGTAGGCACCATGGCCGGGAG
CACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCTGATGATGCGGAG
GAGAGGGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGGGCCCGGGAGCAGGCTGAAG
CTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGA
GCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGA
GGTATGAAGGTGATTGAAAACCGGGCTCTAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCC
AGCTGAAGGAAGCAAAGCACATTGCAGAAGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAA
GTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGCGCCGAGCTGGCAGAGTCCCGT
TGCCGAGAGATGGATGAGCAGATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTG
AAGAAAAGTACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACT
CAAGGAGGCGGAGACCCGGGCTGAGTTTGCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATT
GATGACTTGGAAGATGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATTAGCGACGAGCTGG
ACCACGCCCTCAATGACATGACCTCTATGTAA

hide sequence

RefSeq Acc Id:

XM_006232581 ⟹ XP_006232643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,523,324 - 175,545,014 (+)	NCBI
Rnor_6.0	2	189,429,984 - 189,451,340 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

CGGGTGAGTGAGTTCCGGTATTTCAGGGCGGAGCAGGCGGAAGTAGGGTGAAAAGCGGCTACAA
CGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGAAGCAGCTGGGTAGGCACCATGGCCGGGAG
CACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCTGATGATGCGGAG
GAGAGGGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGGGCCCGGGAGCAGGCTGAAG
CTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGA
GCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCGGAGAAGGCTGCTGATGAGAGTGAGAGA
GGTATGAAGGTGATTGAAAACCGGGCTCTAAAAGATGAAGAAAAGATGGAGCTCCAGGAAATCC
AGCTGAAGGAAGCAAAGCACATTGCAGAAGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAA
GTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGCGCCGAGCTGGCAGAGTCTAAG
TGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAATCTCTTGAGGCTCAGG
CGGAGAAGTACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACT
CAAGGAGGCGGAGACCCGGGCTGAGTTTGCTGAAAGATCGGTAGCCAAACTGGAAAAGACCATT
GATGACTTGGAAGATAAGCTGAAGTGCACCAAAGAGGAGCATCTCTGTACACAAAGGATGCTGG
ACCAGACCCTGCTGGACCTGAACGAGATGTAGACCTTCCCCATCCCTGCCCTGCCCTGCGGCCG
CTCCTCCCTCTGACCTTGACTCCGCCTGAGGCCAGCCTCCCTGAAGCTGGCCTTGAAACTGAGG
GCTGATCTTTTTAACTGAAGGCTGCTTTCCCTCCTGCCACCCCTCTTACCCCTCTTGTCTTTTT
CACAAAACTGTGTCAGCCTCTTCCCAGAGTTCCAGCTGGAGGGCTGAACACCTTTGGGAACAAT
ATTTAAGGGAATGTGAGCACAGCGCAAAGTGTCCTCAATGCAGTTGTGATATGCACATTGTGAT
TACTTTTTGTCTTAGCAACCATTTTTAACATTCCAAGCACTTGTGCAGCTTGGAGCAGCACATC
TTAGCCTAATGGATACCGTCTCTCCATGGAGGAGAAACACAGGAATGGGCCTGCCTTACTGAGA
GCCAGCAGAGCCCAGGCAGACTCCACTGTGGGAGACCTCAGTGCTCTGTACCAAGTCTTAGCCA
AACAACAGGGATTCTAGGAAGTTAGCCAAAAACAAAAACCATTCCGGTCTGTGAAGGTTTTCAG
CTTTGATATCTTTGAACAACTTTACACTTATTTTTAGTTTTGACTTTTTCCGTCCGATGTGACC
AAATAGGAGAGTGAGACATCTGAGACGCCCCCGCCTCCCAGGGCCCTTGTGCATGTTAGGCCAG
CGTGCTACCGTTCACCCCCAGCCCTGAGCCCGAACTTGTCTCAGCTCTACCCCTTTCCCAACTG
CTCAGAAATGGATCATGCTGCCCCTTAGTGTTGTGGTGACCTCTTAGTGTTCACCTGCCCCCAA
GGGAGACGGAAAAGGAAATTATGTTTGTGCCACTGATTTAGCCACATGAAAGTCATCTCATTGC
TCTTTCCTGAAGCTGCTGTCTCTAAAGTGCCATCTCTTTGTGCTTTGTATCAGTCAGTGCTGGA
GAAATCTTGAATAGCTTATGTTTAAAAAAAAAAAAGAACTTTTTAAATTTTATATTATTTTGAA
ATTGTTTTTGGGGGGTTAGGTTACCTTGGCCAACCCACTGGCTGTGAGAATTCTTTGCAGTCTA
TGGGCTAGTGGTGTGCTGATCTTTCAAGTGTCCCCACCCAATTGCCATGTTCAGGTGGTTTCTT
CTCAGCCTGTTAGGTGGGCGCCCTGCAGATTCCTGGCTTGTTTGTACTCCTCCAACCGGAGAAA
GAGAACCCTGTAGTGCAACTGTTTTGATACTGAATAGTGACAAGTGACATTTTGAATAAAGAAC
CAGTCCCTCCATGA

hide sequence

RefSeq Acc Id:

XM_006232584 ⟹ XP_006232646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,522,643 - 175,542,924 (+)	NCBI
Rnor_6.0	2	189,429,980 - 189,449,989 (+)	NCBI
Rnor_5.0	2	208,856,598 - 208,884,385 (+)	NCBI

Sequence:

show sequence

CGGGCGGGTGAGTGAGTTCCGGTATTTCAGGGCGGAGCAGGCGGAAGTAGGGTGAAAAGCGGCT
ACAACGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGAAGCAGCTGGGTAGGCACCATGGCCG
GGAGCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCTGATGATGC
GGAGGAGAGGGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGGGCCCGGGAGCAGGCT
GAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCC
AGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCGGAGAAGGCTGCTGATGAGAGTGA
GAGAGGTATGAAGGTGATTGAAAACCGGGCTCTAAAAGATGAAGAAAAGATGGAGCTCCAGGAA
ATCCAGCTGAAGGAAGCAAAGCACATTGCAGAAGAGGCAGACAGGAAGTATGAAGAGGTGGCTC
GTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGCGCCGAGCTGGCAGAGTC
CCGTTGCCGAGAGATGGATGAGCAGATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCT
GCTGAAGAAAAGTACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATA
AACTCAAGGAGGCGGAGACCCGGGCTGAGTTTGCTGAAAGATCGGTAGCCAAACTGGAAAAGAC
CATTGATGACTTGGAAGAGCGTCTCTACAGCCAACTTGAGCGAAACCGCCTGCTTTCTAATGAG
CTGAAGCTAACGCTGCATGGTCTTTGTGACTGACGGGCAGGGCTCCCTGATGCCCAGTAAACCC
ACACCACTGACCTGGACCCAGCCAAAAGCTGACTGCCTTTTAAAAAGTCACTGTTCGCCCTAAG
CAAGTTGCTTTTTAATGAGGGCAGCTAGACTACTGTTGATTTCCTGGCAGCCCCCTTCAAGTTG
CAATGGCTATTTCTATTCTAGAAGAGATTGTGGGTGATGAAGATGGGGCCTGGGAGGTTTAGTG
CGGAACTTGGAAACCGTTAGCTGCAGCCCTCTCACCTGTATACTGACTGTAGGGTTTGCTCACC
TGCATGGTTATTTTCTAACAATAAAAACACTGACTTGACAAGATGTTGTAGCTGCTTCATCTGC
AGGCCCAGGGACGGGCTCTTCTGACTGGGTGGAAATGGGGATGGGAAAGACGGGTGTGTGCTGT
GAAAATGGCCTGATTTGCGCGTTTTCTTCCCTGAAGCTCTGTGGTTTACTTGCTAAGCAGGTGA
ATGCTTGGTGTCCCTCCACTGGCTTTCTTCCTGATAGTTTTCCTTCTTGCTGCTTTTGTGTTTA
GTTGTAAGTCACTGTCTGGGTCAGCTCTGTTAATAACTCTGCTAAAATCTCAATGGGGTTCTAC
TTAACAAGAATGCACCTGGGTAGTATTCCTGACTTAAACCTGAGGGCTCCTGTCCTCCCCACTT
TGAAGAAGGTACCTACTGTAGGAGGATCTTGTGCTCTTTACCTGAGATTTTGATCTGTCCTTGT
CTGCTGTGGTCTTACTCTACTGTAGCATTTCAAGTAGGTAATGACCTTCGGACAGAGCCAAAGA
GTGGGTGGGTGCCTGGTGCTTTCTGCCGGATCCTCTGGAGACTGAAAGCTGAATACCTTTTGGT
TGCTTGTGGGAGGGAGAGGAAATGATAGATAAGCCCAGTTCCCTCCCCCAGGTAGTAGAGAAAG
TCCTTGGCTTTCAATAAGCAAGCCGGAGGTGCCACCGAACCCAGGGGTGTGGTAGCTGCCTCCT
GTAACTTTTTTGCAACTGGAACAAGTCTCAGAATGGGGAGAACTTGGAACCTTGTATAACGCTC
TTCTTTATTATTCC

hide sequence

RefSeq Acc Id:

XM_039101595 ⟹ XP_038957523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,523,335 - 175,537,734 (+)	NCBI

RefSeq Acc Id:

XM_039101596 ⟹ XP_038957524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,523,326 - 175,545,014 (+)	NCBI

RefSeq Acc Id:

XM_039101597 ⟹ XP_038957525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,527,393 - 175,545,014 (+)	NCBI

RefSeq Acc Id:

XR_005500229

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	175,517,203 - 175,533,711 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001288214	(Get FASTA)	NCBI Sequence Viewer
	NP_001288215	(Get FASTA)	NCBI Sequence Viewer
	NP_476556	(Get FASTA)	NCBI Sequence Viewer
	NP_775134	(Get FASTA)	NCBI Sequence Viewer
	XP_006232630	(Get FASTA)	NCBI Sequence Viewer
	XP_006232631	(Get FASTA)	NCBI Sequence Viewer
	XP_006232632	(Get FASTA)	NCBI Sequence Viewer
	XP_006232633	(Get FASTA)	NCBI Sequence Viewer
	XP_006232634	(Get FASTA)	NCBI Sequence Viewer
	XP_006232635	(Get FASTA)	NCBI Sequence Viewer
	XP_006232638	(Get FASTA)	NCBI Sequence Viewer
	XP_006232639	(Get FASTA)	NCBI Sequence Viewer
	XP_006232642	(Get FASTA)	NCBI Sequence Viewer
	XP_006232643	(Get FASTA)	NCBI Sequence Viewer
	XP_006232646	(Get FASTA)	NCBI Sequence Viewer
	XP_038957523	(Get FASTA)	NCBI Sequence Viewer
	XP_038957524	(Get FASTA)	NCBI Sequence Viewer
	XP_038957525	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA21721	(Get FASTA)	NCBI Sequence Viewer
	AAA42263	(Get FASTA)	NCBI Sequence Viewer
	AAA42264	(Get FASTA)	NCBI Sequence Viewer
	AAB37701	(Get FASTA)	NCBI Sequence Viewer
	AAC27290	(Get FASTA)	NCBI Sequence Viewer
	AAC27291	(Get FASTA)	NCBI Sequence Viewer
	AAC27292	(Get FASTA)	NCBI Sequence Viewer
	CAA51382	(Get FASTA)	NCBI Sequence Viewer
	EDM00587	(Get FASTA)	NCBI Sequence Viewer
	EDM00588	(Get FASTA)	NCBI Sequence Viewer
	EDM00589	(Get FASTA)	NCBI Sequence Viewer
	EDM00590	(Get FASTA)	NCBI Sequence Viewer
	EDM00591	(Get FASTA)	NCBI Sequence Viewer
	EDM00592	(Get FASTA)	NCBI Sequence Viewer
	EDM00593	(Get FASTA)	NCBI Sequence Viewer
	Q63610	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_775134 ⟸ NM_173111
- Peptide Label:	isoform Tpm3.1cy
- UniProtKB:	Q63610 (UniProtKB/Swiss-Prot), Q63600 (UniProtKB/Swiss-Prot), Q63599 (UniProtKB/Swiss-Prot), Q63601 (UniProtKB/Swiss-Prot), A6J6J6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGSTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELD RAQERLATALQKLEEAEKVADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEE VARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKIL TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM hide sequence

RefSeq Acc Id:	NP_476556 ⟸ NM_057208
- Peptide Label:	isoform Tpm3.4cy
- UniProtKB:	Q63610 (UniProtKB/Swiss-Prot), A6J6J8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGSTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELD RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEE VARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKIL TDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKLTLHGLCD hide sequence

RefSeq Acc Id:

XP_006232639 ⟸ XM_006232577

- Peptide Label:

isoform X8

- Sequence:

show sequence

MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA
LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM
KVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCS
ELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD
LEERLYSQLERNRLLSNELKLTLHGLCD

hide sequence

RefSeq Acc Id:	XP_006232635 ⟸ XM_006232573
- Peptide Label:	isoform X6
- UniProtKB:	A0A140TAF0 (UniProtKB/TrEMBL), A6J6J5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM KVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCS ELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD LEDELYAQKLKYKAISDELDHALNDMTSI hide sequence

RefSeq Acc Id:

XP_006232631 ⟸ XM_006232569

- Peptide Label:

isoform X3

- Sequence:

show sequence

MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA
LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM
KVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCR
EMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD
LEDELYAQKLKYKAISDELDHALNDMTSI

hide sequence

RefSeq Acc Id:

XP_006232638 ⟸ XM_006232576

- Peptide Label:

isoform X7

- Sequence:

show sequence

MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA
LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM
KVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCR
EMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD
LEERLYSQLERNRLLSNELKLTLHGLCD

hide sequence

RefSeq Acc Id:

XP_006232632 ⟸ XM_006232570

- Peptide Label:

isoform X2

- Sequence:

show sequence

MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA
LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM
KVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCR
EMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD
LEDELYAQKLKYKAISDELDHALNDMTSI

hide sequence

RefSeq Acc Id:

XP_006232633 ⟸ XM_006232571

- Peptide Label:

isoform X4

- Sequence:

show sequence

MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA
LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM
KVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCR
EMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD
LEDELYAQKLKYKAISDELDHALNDMTSM

hide sequence

RefSeq Acc Id:	XP_006232630 ⟸ XM_006232568
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A144 (UniProtKB/TrEMBL), A6J6J4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM KVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCR EMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD LEDKLKCTKEEHLCTQRMLDQTLLDLNEM hide sequence

RefSeq Acc Id:

XP_006232634 ⟸ XM_006232572

- Peptide Label:

isoform X5

- Sequence:

show sequence

MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA
LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM
KVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCS
ELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD
LEDKLKCTKEEHLCTQRMLDQTLLDLNEM

hide sequence

RefSeq Acc Id:	XP_006232646 ⟸ XM_006232584
- Peptide Label:	isoform X13
- UniProtKB:	A0A8L2QDD9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGSTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELD RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEE VARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKIL TDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKLTLHGLCD hide sequence

RefSeq Acc Id:

XP_006232642 ⟸ XM_006232580

- Peptide Label:

isoform X11

- Sequence:

show sequence

MAGSTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELD
RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEE
VARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKIL
TDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSM

hide sequence

RefSeq Acc Id:

XP_006232643 ⟸ XM_006232581

- Peptide Label:

isoform X12

- Sequence:

show sequence

MAGSTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELD
RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEE
VARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKIL
TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLNEM

hide sequence

RefSeq Acc Id:

NP_001288214 ⟸ NM_001301285

- Peptide Label:

isoform Tpm3.12st

- Sequence:

show sequence

MMEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKYSEA
LKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM
KVIENRALKDEEKMELQEIQLKEAKRIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCS
ELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDD
LEDELYAQKLKYKAISDGLDHVLNDMTSI

hide sequence

RefSeq Acc Id:	NP_001288215 ⟸ NM_001301286
- Peptide Label:	isoform Tpm3.3cy
- UniProtKB:	Q63610 (UniProtKB/Swiss-Prot), A6J6K0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGSTTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELD RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEE VARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKIL TDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELDHALNDMTSI hide sequence

RefSeq Acc Id:

ENSRNOP00000023605 ⟸ ENSRNOT00000023605

RefSeq Acc Id:

ENSRNOP00000023567 ⟸ ENSRNOT00000023567

RefSeq Acc Id:

ENSRNOP00000035561 ⟸ ENSRNOT00000029076

RefSeq Acc Id:	XP_038957524 ⟸ XM_039101596
- Peptide Label:	isoform X10
- UniProtKB:	A0A8L2QDD2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038957523 ⟸ XM_039101595
- Peptide Label:	isoform X9
- UniProtKB:	A0A8L2QDD2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038957525 ⟸ XM_039101597
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6G322 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000097306 ⟸ ENSRNOT00000101991

RefSeq Acc Id:

ENSRNOP00000085183 ⟸ ENSRNOT00000114156

RefSeq Acc Id:

ENSRNOP00000079275 ⟸ ENSRNOT00000112248

RefSeq Acc Id:

ENSRNOP00000094091 ⟸ ENSRNOT00000101614

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63610-F1-model_v2	AlphaFold	Q63610	1-248	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621546	AgrOrtholog
BioCyc Gene	G2FUF-52369	BioCyc
Ensembl Genes	ENSRNOG00000017441	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000023567	ENTREZGENE
	ENSRNOP00000023567.6	UniProtKB/TrEMBL
	ENSRNOP00000023605	ENTREZGENE
	ENSRNOP00000023605.4	UniProtKB/TrEMBL
	ENSRNOP00000035561	ENTREZGENE
	ENSRNOP00000035561.5	UniProtKB/TrEMBL
	ENSRNOP00000079275	ENTREZGENE
	ENSRNOP00000079275.1	UniProtKB/TrEMBL
	ENSRNOP00000085183	ENTREZGENE
	ENSRNOP00000085183.1	UniProtKB/TrEMBL
	ENSRNOP00000094091	ENTREZGENE
	ENSRNOP00000094091.1	UniProtKB/TrEMBL
	ENSRNOP00000097306	ENTREZGENE
	ENSRNOP00000097306.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023567	ENTREZGENE
	ENSRNOT00000023567.9	UniProtKB/TrEMBL
	ENSRNOT00000023605	ENTREZGENE
	ENSRNOT00000023605.8	UniProtKB/TrEMBL
	ENSRNOT00000029076	ENTREZGENE
	ENSRNOT00000029076.6	UniProtKB/TrEMBL
	ENSRNOT00000101614	ENTREZGENE
	ENSRNOT00000101614.1	UniProtKB/TrEMBL
	ENSRNOT00000101991	ENTREZGENE
	ENSRNOT00000101991.1	UniProtKB/TrEMBL
	ENSRNOT00000112248	ENTREZGENE
	ENSRNOT00000112248.1	UniProtKB/TrEMBL
	ENSRNOT00000114156	ENTREZGENE
	ENSRNOT00000114156.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.170	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.5.340	UniProtKB/TrEMBL
	1.20.5.370	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Tropomyosin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	XRCC4-like_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:117557	UniProtKB/Swiss-Prot
NCBI Gene	117557	ENTREZGENE
PANTHER	TROPOMYOSIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TROPOMYOSIN 3, RELATED SEQUENCE 7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TROPOMYOSIN ALPHA-3 CHAIN	UniProtKB/TrEMBL
	TROPOMYOSIN-1, ISOFORMS 33/34	UniProtKB/TrEMBL
Pfam	Tropomyosin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tpm3	PhenoGen
PRINTS	TROPOMYOSIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	TROPOMYOSIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Tropomyosin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A140TAF0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A144	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B5K9_RAT	UniProtKB/TrEMBL
	A0A8I6G322	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QDD2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QDD9	ENTREZGENE, UniProtKB/TrEMBL
	A6J6J4	ENTREZGENE, UniProtKB/TrEMBL
	A6J6J5	ENTREZGENE, UniProtKB/TrEMBL
	A6J6J6	ENTREZGENE, UniProtKB/TrEMBL
	A6J6J8	ENTREZGENE, UniProtKB/TrEMBL
	A6J6K0	ENTREZGENE, UniProtKB/TrEMBL
	Q63599	ENTREZGENE
	Q63600	ENTREZGENE
	Q63601	ENTREZGENE
	Q63610	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q63599	UniProtKB/Swiss-Prot
	Q63600	UniProtKB/Swiss-Prot
	Q63601	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-03-27	Tpm3	tropomyosin 3	Tpm3	tropomyosin 3, gamma	Name changed	629549	APPROVED
2005-07-08	Tpm3	tropomyosin 3, gamma			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Tpm3	tropomyosin 3, gamma			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	more than 10 isoforms in brain	634228

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)