Gba (glucosylceramidase beta) - Rat Genome Database

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Gene: Gba (glucosylceramidase beta) Rattus norvegicus
Analyze
Symbol: Gba
Name: glucosylceramidase beta
RGD ID: 1589149
Description: Enables glucosylceramidase activity. Involved in several processes, including regulation of water loss via skin; response to dexamethasone; and skin morphogenesis. Located in lysosome. Human ortholog(s) of this gene implicated in Gaucher's disease (multiple); Lewy body dementia; Parkinson's disease (multiple); and Parkinsonism. Orthologous to human GBA1 (glucosylceramidase beta 1); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 17beta-hydroxy-5alpha-androstan-3-one; 3,3',5-triiodo-L-thyronine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glucocerebrosidase; glucosidase, beta, acid; glucosylceramidase; LOC684536; lysosomal acid glucosylceramidase; MGC188451; similar to Glucosylceramidase precursor (Beta-glucocerebrosidase) (Acid beta-glucosidase) (D-glucosyl-N-acylsphingosine glucohydrolase)
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22174,609,437 - 174,615,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,609,403 - 174,618,263 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,755,295 - 181,761,307 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02179,777,667 - 179,783,679 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02174,377,514 - 174,383,527 (+)NCBIRnor_WKY
Rnor_6.02188,511,781 - 188,522,602 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,516,582 - 188,522,601 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,931,042 - 207,937,062 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2168,551,737 - 168,557,757 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
antigen processing and presentation  (ISO)
autophagosome organization  (ISO)
autophagy  (ISO)
beta-glucoside catabolic process  (IDA)
brain morphogenesis  (ISO)
cell death in response to oxidative stress  (ISO)
cell maturation  (ISO)
cellular response to starvation  (ISO)
cellular response to tumor necrosis factor  (ISO)
central nervous system development  (ISO)
ceramide biosynthetic process  (ISO)
cerebellar Purkinje cell layer formation  (ISO)
cholesterol metabolic process  (IEA,ISO)
determination of adult lifespan  (ISO)
establishment of skin barrier  (IMP)
glucosylceramide catabolic process  (IBA,ISO)
glucosylceramide metabolic process  (ISO)
hematopoietic stem cell proliferation  (ISO)
homeostasis of number of cells  (ISO)
lipid glycosylation  (ISO)
lipid storage  (ISO)
lymphocyte migration  (ISO)
lysosome organization  (ISO)
microglia differentiation  (ISO)
microglial cell proliferation  (ISO)
mitochondrion organization  (ISO)
mitophagy  (ISO)
motor behavior  (ISO)
negative regulation of interleukin-6 production  (ISO)
negative regulation of MAP kinase activity  (ISO)
negative regulation of neuron apoptotic process  (ISO)
negative regulation of neuron death  (ISO)
negative regulation of protein metabolic process  (ISO)
negative regulation of protein-containing complex assembly  (ISO)
nervous system process  (ISO)
neuromuscular process  (ISO)
neuron apoptotic process  (ISO)
neuron projection development  (ISO)
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization  (ISO)
positive regulation of neuronal action potential  (ISO)
positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (ISO)
positive regulation of protein dephosphorylation  (ISO)
positive regulation of protein lipidation  (ISO)
positive regulation of protein metabolic process  (ISO)
positive regulation of protein-containing complex disassembly  (ISO)
positive regulation of proteolysis involved in protein catabolic process  (ISO)
proteasome-mediated ubiquitin-dependent protein catabolic process  (ISO)
pyramidal neuron differentiation  (ISO)
regulation of membrane potential  (ISO)
regulation of protein metabolic process  (ISO)
regulation of TOR signaling  (ISO)
respiratory electron transport chain  (ISO)
response to dexamethasone  (IDA)
response to estrogen  (IDA)
response to pH  (IDA)
response to testosterone  (IDA)
response to thyroid hormone  (IDA)
skin epidermis development  (IMP)
sphingosine biosynthetic process  (ISO)
T cell differentiation in thymus  (ISO)
termination of signal transduction  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Alterations of glucosylceramide-beta-glucosidase levels in the skin of patients with psoriasis vulgaris. Alessandrini F, etal., J Invest Dermatol. 2004 Dec;123(6):1030-6.
2. Characterization of the activation of rat liver beta-glucosidase by sialosylgangliotetraosylceramide. Basu A and Glew RH, J Biol Chem. 1985 Oct 25;260(24):13067-73.
3. Genes associated with Parkinson's disease: regulation of autophagy and beyond. Beilina A and Cookson MR, J Neurochem. 2015 Jul 30. doi: 10.1111/jnc.13266.
4. Gene-wise association of variants in four lysosomal storage disorder genes in neuropathologically confirmed Lewy body disease. Clark LN, etal., PLoS One. 2015 May 1;10(5):e0125204. doi: 10.1371/journal.pone.0125204. eCollection 2015.
5. Loss of beta-glucocerebrosidase activity does not affect alpha-synuclein levels or lysosomal function in neuronal cells. Dermentzaki G, etal., PLoS One. 2013 Apr 8;8(4):e60674. doi: 10.1371/journal.pone.0060674. Print 2013.
6. Molecular analysis of Turkish Gaucher disease patients: identification of novel mutations in glucocerebrosidase (GBA) gene. Emre S, etal., Eur J Med Genet. 2008 Jul-Aug;51(4):315-21. doi: 10.1016/j.ejmg.2008.02.004. Epub 2008 Mar 4.
7. Lysosomal beta-glucosidase of rat liver. Fabbro D, etal., Enzyme. 1984;31(2):122-7.
8. Spatial and temporal correlation between neuron loss and neuroinflammation in a mouse model of neuronopathic Gaucher disease. Farfel-Becker T, etal., Hum Mol Genet. 2011 Apr 1;20(7):1375-86. Epub 2011 Jan 20.
9. Functional consequences of a neutral pH in neonatal rat stratum corneum. Fluhr JW, etal., J Invest Dermatol. 2004 Jul;123(1):140-51.
10. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
11. Glucocerebrosidase is present in alpha-synuclein inclusions in Lewy body disorders. Goker-Alpan O, etal., Acta Neuropathol. 2010 Nov;120(5):641-9. Epub 2010 Sep 14.
12. Serine protease activity and residual LEKTI expression determine phenotype in Netherton syndrome. Hachem JP, etal., J Invest Dermatol. 2006 Jul;126(7):1609-21. Epub 2006 Apr 6.
13. Glucosylceramide metabolism is regulated during normal and hormonally stimulated epidermal barrier development in the rat. Hanley K, etal., J Lipid Res. 1997 Mar;38(3):576-84.
14. Association of the glucocerebrosidase N370S allele with Parkinson's disease in two separate Chinese Han populations of mainland China. Hu FY, etal., Eur J Neurol. 2010 Dec;17(12):1476-8. doi: 10.1111/j.1468-1331.2010.03097.x.
15. Impaired intracellular trafficking defines early Parkinson's disease. Hunn BH, etal., Trends Neurosci. 2015 Mar;38(3):178-88. doi: 10.1016/j.tins.2014.12.009. Epub 2015 Jan 29.
16. Large-scale screening of the Gaucher's disease-related glucocerebrosidase gene in Europeans with Parkinson's disease. Lesage S, etal., Hum Mol Genet. 2011 Jan 1;20(1):202-10. Epub 2010 Oct 14.
17. Mutations in the glucocerebrosidase gene confer a risk for Parkinson disease in North Africa. Lesage S, etal., Neurology. 2011 Jan 18;76(3):301-3.
18. Clinicogenetic study of GBA mutations in patients with familial Parkinson's disease. Li Y, etal., Neurobiol Aging. 2014 Apr;35(4):935.e3-8. doi: 10.1016/j.neurobiolaging.2013.09.019. Epub 2013 Oct 12.
19. Osteopenia in Gaucher disease develops early in life: response to imiglucerase enzyme therapy in children, adolescents and adults. Mistry PK, etal., Blood Cells Mol Dis. 2011 Jan 15;46(1):66-72. Epub 2010 Nov 26.
20. Systemic inflammation in glucocerebrosidase-deficient mice with minimal glucosylceramide storage. Mizukami H, etal., J Clin Invest. 2002 May;109(9):1215-21.
21. Glucocerebrosidase mutations are not a common risk factor for Parkinson disease in North Africa. Nishioka K, etal., Neurosci Lett. 2010 Jun 21;477(2):57-60. Epub 2009 Nov 27.
22. Glucocerebrosidase mutations in diffuse Lewy body disease. Nishioka K, etal., Parkinsonism Relat Disord. 2011 Jan;17(1):55-7.
23. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
24. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
25. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
26. GOA pipeline RGD automated data pipeline
27. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
28. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
29. Comprehensive gene review and curation RGD comprehensive gene curation
30. Detection of 12 new mutations in Gaucher disease Brazilian patients. Rozenberg R, etal., Blood Cells Mol Dis. 2006 Nov-Dec;37(3):204-9. Epub 2006 Oct 23.
31. Developmental changes of glycosidase activities in rat renal cortex. Schulze E, etal., Biomed Biochim Acta. 1986;45(5):601-9.
Additional References at PubMed
PMID:9201993   PMID:12477932   PMID:15916907   PMID:16293621   PMID:17187079   PMID:17897319   PMID:17954912   PMID:18022370   PMID:18346921   PMID:19279008   PMID:19279011   PMID:19710420  
PMID:20148966   PMID:21700325   PMID:22665763   PMID:23376485   PMID:23533145   PMID:23707074   PMID:24022302   PMID:24211208   PMID:24388731   PMID:25202012   PMID:25456120   PMID:26392287  
PMID:26724485   PMID:27378698   PMID:27789271  


Genomics

Comparative Map Data
Gba
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22174,609,437 - 174,615,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,609,403 - 174,618,263 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,755,295 - 181,761,307 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02179,777,667 - 179,783,679 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02174,377,514 - 174,383,527 (+)NCBIRnor_WKY
Rnor_6.02188,511,781 - 188,522,602 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,516,582 - 188,522,601 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,931,042 - 207,937,062 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2168,551,737 - 168,557,757 (+)NCBICelera
Cytogenetic Map2q34NCBI
GBA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,234,452 - 155,244,627 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1155,234,452 - 155,244,699 (-)EnsemblGRCh38hg38GRCh38
GRCh371155,204,243 - 155,214,418 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,470,867 - 153,481,112 (-)NCBINCBI36Build 36hg18NCBI36
Celera1128,277,514 - 128,287,929 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1126,567,152 - 126,576,952 (-)NCBIHuRef
CHM1_11156,599,733 - 156,610,147 (-)NCBICHM1_1
T2T-CHM13v2.01154,373,009 - 154,383,185 (-)NCBIT2T-CHM13v2.0
Gba
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,110,223 - 89,116,180 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,110,235 - 89,116,273 (+)EnsemblGRCm39 Ensembl
GRCm38389,202,905 - 89,208,873 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,202,928 - 89,208,966 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,006,850 - 89,012,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,288,867 - 89,294,608 (+)NCBIMGSCv36mm8
Celera389,236,609 - 89,242,363 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.01NCBI
Gba1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,682,097 - 1,689,376 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,682,097 - 1,689,373 (-)NCBIChiLan1.0ChiLan1.0
GBA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,317,704 - 42,322,285 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,317,862 - 42,322,864 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,808,580 - 41,813,161 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,186,904 - 42,191,488 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,186,929 - 42,191,486 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,966,726 - 41,971,306 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,020,650 - 42,025,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,304,204 - 42,308,788 (+)NCBIUU_Cfam_GSD_1.0
Gba1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,685,030 - 25,690,379 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,715,408 - 4,720,798 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365804,715,869 - 4,720,752 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GBA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,584,134 - 94,609,745 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,583,905 - 94,606,689 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,366,844 - 103,389,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap4q21NCBI
GBA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,598,110 - 8,631,517 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,598,628 - 8,630,990 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,943,329 - 7,948,511 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gba1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,315,142 - 2,321,327 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,315,371 - 2,321,327 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gba
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:160
Interacting mature miRNAs:186
Transcripts:ENSRNOT00000074727
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072175950118Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2152413072175950118Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072175950118Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072175950118Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2152413072175950118Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072175950118Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
61473Bp19Blood pressure QTL 196.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921175950118Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
7488904Bp363Blood pressure QTL 3630.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2172982062175950118Rat
61457Niddm8Non-insulin dependent diabetes mellitus QTL 84.10.01blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2174543008175950118Rat

Markers in Region
RH137121  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22174,615,528 - 174,615,722 (+)MAPPERmRatBN7.2
Rnor_6.02188,522,674 - 188,522,867NCBIRnor6.0
Rnor_5.02207,937,134 - 207,937,327UniSTSRnor5.0
Celera2168,557,829 - 168,558,022UniSTS
RH 3.4 Map21155.7UniSTS
Cytogenetic Map2q34UniSTS
RH141384  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22174,615,404 - 174,615,575 (+)MAPPERmRatBN7.2
Rnor_6.02188,522,550 - 188,522,720NCBIRnor6.0
Rnor_5.02207,937,010 - 207,937,180UniSTSRnor5.0
Celera2168,557,705 - 168,557,875UniSTS
RH 3.4 Map21156.4UniSTS
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 57 41 19 41 1 74 35 38 11
Low 10 8 10 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000074727   ⟹   ENSRNOP00000063935
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2174,609,403 - 174,618,263 (+)Ensembl
Rnor_6.0 Ensembl2188,516,582 - 188,522,601 (+)Ensembl
RefSeq Acc Id: NM_001127639   ⟹   NP_001121111
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22174,609,437 - 174,615,457 (+)NCBI
Rnor_6.02188,516,582 - 188,522,602 (+)NCBI
Rnor_5.02207,931,042 - 207,937,062 (+)NCBI
Celera2168,551,737 - 168,557,757 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001121111 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66732 (Get FASTA)   NCBI Sequence Viewer  
  EDM00662 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001121111   ⟸   NM_001127639
- Peptide Label: precursor
- UniProtKB: B2RYC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000063935   ⟸   ENSRNOT00000074727
Protein Domains
Glyco_hydro_30   Glyco_hydro_30C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYC9-F1-model_v2 AlphaFold B2RYC9 1-515 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691461
Promoter ID:EPDNEW_R1986
Type:initiation region
Name:Gba_1
Description:glucosylceramidase beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02188,516,552 - 188,516,612EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589149 AgrOrtholog
BioCyc Gene G2FUF-52439 BioCyc
Ensembl Genes ENSRNOG00000049281 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000063935 ENTREZGENE
  ENSRNOP00000063935.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074727 ENTREZGENE
  ENSRNOT00000074727.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7934870 IMAGE-MGC_LOAD
InterPro GH30_C UniProtKB/TrEMBL
  Glyco_hydro_30 UniProtKB/TrEMBL
  Glyco_hydro_30_TIM-barrel UniProtKB/TrEMBL
  Glyco_hydro_catalytic_core UniProtKB/TrEMBL
KEGG Report rno:684536 UniProtKB/TrEMBL
MGC_CLONE MGC:188451 IMAGE-MGC_LOAD
NCBI Gene 684536 ENTREZGENE
PANTHER Glyco_hydro_30 UniProtKB/TrEMBL
Pfam Glyco_hydro_30 UniProtKB/TrEMBL
  Glyco_hydro_30C UniProtKB/TrEMBL
PhenoGen Gba PhenoGen
PRINTS GLHYDRLASE30 UniProtKB/TrEMBL
Superfamily-SCOP Glyco_hydro_cat UniProtKB/TrEMBL
UniProt B2RYC9 ENTREZGENE, UniProtKB/TrEMBL
  M0R3L8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Gba  glucosylceramidase beta  Gba  glucosidase, beta, acid  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-23 Gba  glucosidase, beta, acid  LOC684536  similar to Glucosylceramidase precursor (Beta-glucocerebrosidase) (Acid beta-glucosidase) (D-glucosyl-N-acylsphingosine glucohydrolase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC684536  similar to Glucosylceramidase precursor (Beta-glucocerebrosidase) (Acid beta-glucosidase) (D-glucosyl-N-acylsphingosine glucohydrolase)      Symbol and Name status set to provisional 70820 PROVISIONAL