Pip5k1a (phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha) - Rat Genome Database

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Gene: Pip5k1a (phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha) Rattus norvegicus
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Symbol: Pip5k1a
Name: phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha
RGD ID: 1306127
Description: Predicted to enable 1-phosphatidylinositol-4-phosphate 5-kinase activity and kinase binding activity. Predicted to be involved in several processes, including activation of GTPase activity; focal adhesion assembly; and ruffle assembly. Predicted to act upstream of or within fibroblast migration and phosphatidylinositol biosynthetic process. Predicted to be located in several cellular components, including lamellipodium; nuclear speck; and ruffle membrane. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Predicted to be active in plasma membrane. Orthologous to human PIP5K1A (phosphatidylinositol-4-phosphate 5-kinase type 1 alpha); PARTICIPATES IN Arf family mediated signaling pathway; E-cadherin signaling pathway; phosphoinositide metabolic pathway; INTERACTS WITH acrylamide; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 68 kDa type I phosphatidylinositol 4-phosphate 5-kinase; LOC365865; phosphatidylinositol 4-phosphate 5-kinase type I alpha; phosphatidylinositol 4-phosphate 5-kinase type-1 alpha; phosphatidylinositol-4-phosphate 5-kinase type-1 alpha; phosphatidylinositol-4-phosphate 5-kinase, type 1 beta; phosphatidylinositol-4-phosphate 5-kinase, type I, alpha; PIP5K1-alpha; Pip5k1b; PIP5KIalpha; ptdIns(4)P-5-kinase 1 alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22182,628,299 - 182,671,584 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,628,300 - 182,671,598 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,292,988 - 190,336,170 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02188,089,077 - 188,132,194 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02182,925,465 - 182,968,650 (-)NCBIRnor_WKY
Rnor_6.02196,227,669 - 196,270,949 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,227,670 - 196,270,826 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,722,370 - 215,765,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,962,527 - 190,005,684 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12189,923,204 - 189,966,433 (-)NCBI
Celera2175,165,145 - 175,208,290 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Diacylglycerol kinase zeta regulates phosphatidylinositol 4-phosphate 5-kinase Ialpha by a novel mechanism. Luo B, etal., Cell Signal. 2004 Aug;16(8):891-7. doi: 10.1016/j.cellsig.2004.01.010.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8798574   PMID:15870270   PMID:18288197   PMID:18305108   PMID:20622009   PMID:20660631   PMID:21423176   PMID:27739494   PMID:32686865  


Genomics

Comparative Map Data
Pip5k1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22182,628,299 - 182,671,584 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,628,300 - 182,671,598 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,292,988 - 190,336,170 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02188,089,077 - 188,132,194 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02182,925,465 - 182,968,650 (-)NCBIRnor_WKY
Rnor_6.02196,227,669 - 196,270,949 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,227,670 - 196,270,826 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,722,370 - 215,765,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,962,527 - 190,005,684 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12189,923,204 - 189,966,433 (-)NCBI
Celera2175,165,145 - 175,208,290 (-)NCBICelera
Cytogenetic Map2q34NCBI
PIP5K1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,195,419 - 151,249,531 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1151,197,949 - 151,249,536 (+)EnsemblGRCh38hg38GRCh38
GRCh371151,171,028 - 151,222,007 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,437,696 - 149,488,629 (+)NCBINCBI36Build 36hg18NCBI36
Build 341147,984,144 - 148,035,078NCBI
Celera1124,286,312 - 124,337,297 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,549,129 - 122,599,938 (+)NCBIHuRef
CHM1_11152,566,349 - 152,617,334 (+)NCBICHM1_1
T2T-CHM13v2.01150,322,285 - 150,373,243 (+)NCBIT2T-CHM13v2.0
Pip5k1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,965,841 - 95,014,241 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,965,841 - 95,014,241 (-)EnsemblGRCm39 Ensembl
GRCm38395,058,530 - 95,106,930 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,058,530 - 95,106,930 (-)EnsemblGRCm38mm10GRCm38
MGSCv37394,863,517 - 94,910,780 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,144,999 - 95,192,262 (-)NCBIMGSCv36mm8
Celera396,490,835 - 96,538,184 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
Pip5k1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588555,821 - 605,723 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955588555,818 - 605,459 (+)NCBIChiLan1.0ChiLan1.0
PIP5K1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11130,195,974 - 130,246,198 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,195,974 - 130,246,198 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01126,547,793 - 126,598,618 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PIP5K1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,257,017 - 60,295,866 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,257,332 - 60,295,866 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,700,905 - 59,739,406 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,273,137 - 61,312,006 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,273,153 - 61,312,003 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,102,170 - 60,140,685 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,187,481 - 60,226,180 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,915,268 - 60,954,258 (+)NCBIUU_Cfam_GSD_1.0
Pip5k1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,369,145 - 22,417,998 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,399,954 - 1,446,769 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365801,399,492 - 1,448,398 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIP5K1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,012,945 - 98,056,815 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,012,941 - 98,062,166 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,265,724 - 107,314,945 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIP5K1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,439,726 - 12,490,331 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603812,017,486 - 12,069,455 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pip5k1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,616,121 - 18,658,286 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,616,095 - 18,658,016 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pip5k1a
137 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:225
Count of miRNA genes:148
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000028609
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat

Markers in Region
RH127674  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,628,385 - 182,628,565 (+)MAPPERmRatBN7.2
Rnor_6.02196,227,756 - 196,227,935NCBIRnor6.0
Rnor_5.02215,722,457 - 215,722,636UniSTSRnor5.0
RGSC_v3.42189,962,614 - 189,962,793UniSTSRGSC3.4
Celera2175,165,232 - 175,165,411UniSTS
RH 3.4 Map21199.0UniSTS
Cytogenetic Map2q34UniSTS
RH143262  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,664,652 - 182,664,805 (+)MAPPERmRatBN7.2
Rnor_6.02196,264,019 - 196,264,171NCBIRnor6.0
Rnor_5.02215,758,447 - 215,758,599UniSTSRnor5.0
RGSC_v3.42189,998,877 - 189,999,029UniSTSRGSC3.4
Celera2175,201,483 - 175,201,635UniSTS
RH 3.4 Map21193.11UniSTS
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 36 20 19 20 6 9 74 35 41 11 6
Low 9 21 21 21 2 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000028609   ⟹   ENSRNOP00000028609
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2182,628,300 - 182,671,477 (-)Ensembl
Rnor_6.0 Ensembl2196,227,670 - 196,270,826 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113159   ⟹   ENSRNOP00000093572
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2182,633,245 - 182,647,835 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117151   ⟹   ENSRNOP00000097963
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2182,628,300 - 182,671,461 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119756   ⟹   ENSRNOP00000086696
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2182,628,300 - 182,671,598 (-)Ensembl
RefSeq Acc Id: NM_001042621   ⟹   NP_001036086
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22182,628,299 - 182,671,461 (-)NCBI
Rnor_6.02196,227,669 - 196,270,826 (-)NCBI
Rnor_5.02215,722,370 - 215,765,396 (-)NCBI
RGSC_v3.42189,962,527 - 190,005,684 (-)RGD
Celera2175,165,145 - 175,208,290 (-)RGD
Sequence:
RefSeq Acc Id: XM_008761315   ⟹   XP_008759537
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22182,628,299 - 182,671,584 (-)NCBI
Rnor_6.02196,227,669 - 196,270,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761316   ⟹   XP_008759538
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22182,628,299 - 182,671,584 (-)NCBI
Rnor_6.02196,227,669 - 196,270,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102779   ⟹   XP_038958707
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22182,628,299 - 182,671,584 (-)NCBI
RefSeq Acc Id: XM_039102780   ⟹   XP_038958708
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22182,628,299 - 182,671,584 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001036086   ⟸   NM_001042621
- UniProtKB: D3ZSI8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008759538   ⟸   XM_008761316
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A5T8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759537   ⟸   XM_008761315
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000028609   ⟸   ENSRNOT00000028609
RefSeq Acc Id: XP_038958708   ⟸   XM_039102780
- Peptide Label: isoform X2
- UniProtKB: A0A8L2QH45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958707   ⟸   XM_039102779
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000086696   ⟸   ENSRNOT00000119756
RefSeq Acc Id: ENSRNOP00000093572   ⟸   ENSRNOT00000113159
RefSeq Acc Id: ENSRNOP00000097963   ⟸   ENSRNOT00000117151
Protein Domains
PIPK

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSI8-F1-model_v2 AlphaFold D3ZSI8 1-546 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691537
Promoter ID:EPDNEW_R2062
Type:initiation region
Name:Pip5k1a_1
Description:phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02196,270,913 - 196,270,973EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306127 AgrOrtholog
BioCyc Gene G2FUF-52116 BioCyc
BioCyc Pathway PWY-6351 [D-myo-inositol (1,4,5)-trisphosphate biosynthesis] BioCyc
  PWY-6352 [3-phosphoinositide biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000021068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000028609 ENTREZGENE
  ENSRNOP00000028609.5 UniProtKB/TrEMBL
  ENSRNOP00000086696 ENTREZGENE
  ENSRNOP00000086696.1 UniProtKB/TrEMBL
  ENSRNOP00000093572.1 UniProtKB/TrEMBL
  ENSRNOP00000097963 ENTREZGENE
  ENSRNOP00000097963.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028609 ENTREZGENE
  ENSRNOT00000028609.5 UniProtKB/TrEMBL
  ENSRNOT00000113159.1 UniProtKB/TrEMBL
  ENSRNOT00000117151 ENTREZGENE
  ENSRNOT00000117151.1 UniProtKB/TrEMBL
  ENSRNOT00000119756 ENTREZGENE
  ENSRNOT00000119756.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.800.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PInositol-4-P-5-kinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PInositol-4-P-5-kinase_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PInositol-4-P-5-kinase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 365865 ENTREZGENE
PANTHER PTHR23086 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PIP5K UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pip5k1a PhenoGen
PROSITE PIPK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PIPKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A5T8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJ67_RAT UniProtKB/TrEMBL
  A0A8I6ANU4_RAT UniProtKB/TrEMBL
  A0A8L2QH45 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSI8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Pip5k1a  phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha   Pip5k1a_predicted  phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha (predicted)  'predicted' is removed 2292626 APPROVED
2007-03-22 Pip5k1a_predicted  phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha (predicted)  Pip5k1b_predicted  phosphatidylinositol-4-phosphate 5-kinase, type 1 beta (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-12 Pip5k1b_predicted  phosphatidylinositol-4-phosphate 5-kinase, type 1 beta (predicted)      Symbol and Name status set to approved 70820 APPROVED