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Gene: Ciart (circadian associated repressor of transcription) Rattus norvegicus
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Symbol: Ciart
Name: circadian associated repressor of transcription
Description: Predicted to have E-box binding activity and RNA polymerase II distal enhancer sequence-specific DNA binding activity. Predicted to be involved in circadian regulation of gene expression; locomotor rhythm; and negative regulation of transcription, DNA-templated. Predicted to localize to the nucleus. Orthologous to human CIART (circadian associated repressor of transcription); INTERACTS WITH ammonium chloride; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: circadian-associated transcriptional repressor; hypothetical gene supported by NM_017187; hypothetical protein LOC365871; LOC365871; LOC690012; RGD1566380; similar to High mobility group protein 2 (HMG-2); uncharacterized protein LOC365871
Orthologs:
Homo sapiens (human) : CIART (circadian associated repressor of transcription)  HGNC  Alliance
Mus musculus (house mouse) : Ciart (circadian associated repressor of transcription)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ciart (circadian associated repressor of transcription)
Pan paniscus (bonobo/pygmy chimpanzee) : CIART (circadian associated repressor of transcription)
Canis lupus familiaris (dog) : CIART (circadian associated repressor of transcription)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ciart (circadian associated repressor of transcription)
Sus scrofa (pig) : CIART (circadian associated repressor of transcription)
Chlorocebus sabaeus (African green monkey) : CIART (circadian associated repressor of transcription)
Heterocephalus glaber (naked mole-rat) : Ciart (circadian associated repressor of transcription)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02197,987,705 - 197,991,198 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2197,987,705 - 197,991,574 (-)Ensembl
Rnor_5.02217,478,839 - 217,482,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,659,555 - 190,663,895 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2175,949,238 - 175,952,732 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ciart
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1566380
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.