S100a6 (S100 calcium binding protein A6) - Rat Genome Database

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Gene: S100a6 (S100 calcium binding protein A6) Rattus norvegicus
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Symbol: S100a6
Name: S100 calcium binding protein A6
RGD ID: 620264
Description: Enables calcium ion binding activity and monoatomic ion transmembrane transporter activity. Predicted to be involved in cellular response to virus. Predicted to be located in several cellular components, including cytoplasmic side of plasma membrane; nuclear envelope; and ruffle. Predicted to be active in nucleus and perinuclear region of cytoplasm. Orthologous to human S100A6 (S100 calcium binding protein A6); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: calcium binding protein A6 (calcyclin); calcyclin; prolactin receptor-associated protein; protein S100-A6; S100 calcium binding protein A6 (calcyclin); S100 calcium-binding protein A6
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,398,189 - 178,399,763 (+)NCBIGRCr8
mRatBN7.22176,100,619 - 176,102,181 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,100,899 - 176,102,180 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,241,176 - 183,242,401 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,263,442 - 181,264,667 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,863,300 - 175,864,525 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02190,007,013 - 190,008,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2190,007,216 - 190,008,511 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,441,142 - 209,442,605 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,895,080 - 182,896,305 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,845,185 - 182,846,411 (+)NCBI
Celera2170,035,682 - 170,036,907 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
S100a6Ratgastrointestinal stromal tumor  ISORGD:13540558554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
S100a6Ratimmunodeficiency 42  ISORGD:13540558554872ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete more ...ClinVarPMID:28492532
S100a6RatMHC class II deficiency  ISORGD:13540558554872ClinVar Annotator: match by term: MHC class II deficiencyClinVarPMID:28492532
S100a6Ratparathyroid carcinoma  ISORGD:13540558554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
S100a6Ratsevere congenital neutropenia 3  ISORGD:13540558554872ClinVar Annotator: match by term: Kostmann syndromeClinVarPMID:28492532
S100a6Ratsevere congenital neutropenia 5  ISORGD:13540558554872ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndromeClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
S100a6RatAnimal Mammary Neoplasms  ISORGD:135405511554173CTD Direct Evidence: marker/mechanismCTDPMID:16316942
S100a6Ratcarcinoma  ISORGD:135405511554173CTD Direct Evidence: marker/mechanismCTDPMID:16316942
S100a6RatExperimental Diabetes Mellitus  ISORGD:135405511554173CTD Direct Evidence: marker/mechanismCTDPMID:16123366
S100a6RatExperimental Liver Cirrhosis  ISORGD:135405511554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
S100a6RatExperimental Mammary Neoplasms  ISORGD:135405511554173CTD Direct Evidence: marker/mechanismCTDPMID:16316942
S100a6Ratintracranial vasospasm  ISORGD:135405511554173CTD Direct Evidence: marker/mechanismCTDPMID:12186470
S100a6Ratmedulloblastoma  ISORGD:135405511554173CTD Direct Evidence: marker/mechanismCTDPMID:17579622
S100a6Rattype 2 diabetes mellitus  ISORGD:135405511554173CTD Direct Evidence: marker/mechanismCTDPMID:16123366

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Object Symbol
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Reference
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Source
Original Reference(s)
S100a6Rat(-)-epigallocatechin 3-gallate decreases expressionISORGD:13540556480464epigallocatechin gallate results in decreased expression of S100A6 proteinCTDPMID:31195006
S100a6Rat(1->4)-beta-D-glucan multiple interactionsISORGD:7321436480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of S100A6 mRNACTDPMID:36331819
S100a6Rat(S)-nicotine decreases expressionISORGD:7321436480464Nicotine results in decreased expression of S100A6 mRNACTDPMID:33640489
S100a6Rat1,1-dichloroethene increases expressionISORGD:7321436480464vinylidene chloride results in increased expression of S100A6 mRNACTDPMID:26682919
S100a6Rat1,2-dimethylhydrazine decreases expressionISORGD:73214364804641,2-Dimethylhydrazine results in decreased expression of S100A6 mRNACTDPMID:22206623
S100a6Rat1,3,5-trinitro-1,3,5-triazinane increases expressionEXP 6480464cyclonite results in increased expression of S100A6 mRNACTDPMID:25559034
S100a6Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of S100A6 mRNACTDPMID:25380136|PMID:30723492
S100a6Rat17alpha-ethynylestradiol increases expressionISORGD:7321436480464Ethinyl Estradiol results in increased expression of S100A6 mRNACTDPMID:17942748
S100a6Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of S100A6 mRNACTDPMID:15834898
S100a6Rat17alpha-ethynylestradiol multiple interactionsISORGD:7321436480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of S100A6 mRNACTDPMID:17942748
S100a6Rat17beta-estradiol multiple interactionsISORGD:13540556480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of S100A6 mRNACTDPMID:19619570
S100a6Rat17beta-estradiol multiple interactionsISORGD:7321436480464afimoxifene inhibits the reaction [Estradiol results in increased expression of S100A6 protein]; desmethylarzoxifene inhibits the more ...CTDPMID:26879975
S100a6Rat17beta-estradiol increases expressionISORGD:7321436480464Estradiol results in increased expression of S100A6 mRNA; Estradiol results in increased expression of S100A6 more ...CTDPMID:19484750|PMID:26879975|PMID:39298647
S100a6Rat17beta-estradiol affects expressionISORGD:13540556480464Estradiol affects the expression of S100A6 mRNACTDPMID:22574217
S100a6Rat17beta-estradiol decreases expressionISORGD:13540556480464Estradiol results in decreased expression of S100A6 mRNACTDPMID:23019147
S100a6Rat17beta-estradiol increases expressionISORGD:13540556480464Estradiol results in increased expression of S100A6 mRNACTDPMID:19619570
S100a6Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of S100A6 mRNACTDPMID:17010207
S100a6Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:13540556480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of S100A6 mRNACTDPMID:19619570
S100a6Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of S100A6 mRNACTDPMID:33387578
S100a6Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of S100A6 mRNACTDPMID:34747641

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Biological Process

  
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Original Reference(s)
S100a6Ratcellular response to virus involved_inISORGD:139964441624291 PMID:25480733RGDPMID:25480733
S100a6Ratmonoatomic ion transmembrane transport involved_inIEAGO:00150751600115GO_REF:0000108GOCGO_REF:0000108

Cellular Component
1 to 20 of 29 rows

  
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Original Reference(s)
S100a6Ratcytoplasm located_inISORGD:13540551624291 PMID:10913138, PMID:12601007RGDPMID:10913138|PMID:12601007
S100a6Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
S100a6Ratcytoplasm located_inIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
S100a6Ratcytoplasm located_inISORGD:139964441624291 PMID:25480733RGDPMID:25480733
S100a6Ratcytoplasmic side of plasma membrane located_inISSUniProtKB:P067031600115GO_REF:0000024UniProtGO_REF:0000024
S100a6Ratcytoplasmic side of plasma membrane located_inIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6Ratcytoplasmic side of plasma membrane located_inISORGD:13540551624291 PMID:19724273RGDPMID:19724273
S100a6Ratcytosol located_inISORGD:13540551624291 PMID:19724273RGDGO_REF:0000052|PMID:19724273
S100a6Ratcytosol located_inIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6Ratcytosol located_inISSUniProtKB:P067031600115GO_REF:0000024UniProtGO_REF:0000024
S100a6Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
S100a6Ratnuclear envelope located_inISORGD:13540551624291 PMID:12601007, PMID:12805373RGDPMID:12601007|PMID:12805373
S100a6Ratnuclear envelope located_inIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6Ratnuclear envelope located_inIEAUniProtKB-SubCell:SL-01781600115GO_REF:0000044UniProtGO_REF:0000044
S100a6Ratnucleus located_inISORGD:139964441624291 PMID:25480733RGDPMID:25480733
S100a6Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
S100a6Ratnucleus is_active_inIBAPANTHER:PTN001702104|UniProtKB:P067031600115GO_REF:0000033GO_CentralGO_REF:0000033
S100a6Ratnucleus located_inISORGD:13540551624291 PMID:10913138RGDPMID:10913138
S100a6Ratnucleus located_inIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
1 to 20 of 24 rows

  
Object Symbol
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Reference
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Source
Original Reference(s)
S100a6Ratcalcium ion binding  IDA 633924 RGD 
S100a6Ratcalcium ion binding enablesIEAUniProtKB:P14069|ensembl:ENSMUSP000000010511600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6Ratcalcium ion binding enablesIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6Ratcalcium ion binding enablesIEAInterPro:IPR0020481600115GO_REF:0000002InterProGO_REF:0000002
S100a6Ratcalcium ion binding enablesISORGD:13540551624291 PMID:11937060RGDPMID:11937060
S100a6Ratcalcium ion binding enablesISORGD:7321431624291 PMID:2358072RGDPMID:2358072
S100a6Ratcalcium ion binding enablesISSUniProtKB:P067031600115GO_REF:0000024UniProtGO_REF:0000024
S100a6Ratcalcium ion binding enablesIBAMGI:1330282|MGI:1339467|MGI:1915110|PANTHER:PTN007521306|RGD:3245|RGD:3614|RGD:3615|RGD:620264|RGD:631357|UniProtKB:P02638|UniProtKB:P04271|UniProtKB:P06703|UniProtKB:P31151|UniProtKB:P33763|UniProtKB:Q8WXG8|UniProtKB:Q96FQ6|UniProtKB:Q98953|UniProtKB:Q99584|ZFIN:ZDB-GENE-050522-691600115GO_REF:0000033GO_CentralGO_REF:0000033
S100a6Ratcalcium-dependent protein binding enablesISORGD:13540551624291 PMID:10913138RGDPMID:10913138
S100a6Ratcalcium-dependent protein binding enablesIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6Ratcalcium-dependent protein binding enablesIBAPANTHER:PTN007521306|RGD:3245|RGD:3614|UniProtKB:P04271|UniProtKB:P06703|UniProtKB:P25815|UniProtKB:P31949|UniProtKB:Q989531600115GO_REF:0000033GO_CentralGO_REF:0000033
S100a6Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
S100a6Ratmonoatomic ion transmembrane transporter activity  IDA 633924 RGD 
S100a6Ratprotein binding enablesISORGD:13540551624291UniProtKB:B3EWG3|UniProtKB:O95684|UniProtKB:P04271|UniProtKB:P04637|UniProtKB:P07355|UniProtKB:P26882|UniProtKB:P35579|UniProtKB:P50542|UniProtKB:P50995|UniProtKB:P52292|UniProtKB:P61960|UniProtKB:Q00987|UniProtKB:Q02790|UniProtKB:Q8TD43|UniProtKB:Q9HB71 PMID:10913138, PMID:12577318, PMID:19724273, PMID:20188096, PMID:20591429, PMID:20965181, PMID:25416956, PMID:28514442, PMID:29997244, PMID:31837246, PMID:32296183, PMID:33961781RGDPMID:10913138|PMID:12577318|PMID:19724273|PMID:20188096|PMID:20591429|PMID:20965181|PMID:25416956|PMID:28514442|PMID:29997244|PMID:31837246|PMID:32296183|PMID:33961781
S100a6Ratprotein binding enablesISORGD:7321431624291PR:Q9CXW3|UniProtKB:Q9CXW3 PMID:12042313, PMID:9572262RGDPMID:12042313|PMID:9572262
S100a6Ratprotein homodimerization activity enablesISORGD:13540551624291UniProtKB:P06703 PMID:10913138, PMID:11937060RGDPMID:10913138|PMID:11937060
S100a6Ratprotein homodimerization activity enablesIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6RatS100 protein binding enablesISORGD:13540551624291UniProtKB:P04271 PMID:10913138RGDPMID:10913138
S100a6RatS100 protein binding enablesIEAUniProtKB:P06703|ensembl:ENSP000003577081600115GO_REF:0000107EnsemblGO_REF:0000107
S100a6RatS100 protein binding enablesIBAPANTHER:PTN001702104|UniProtKB:P067031600115GO_REF:0000033GO_CentralGO_REF:0000033
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#
Reference Title
Reference Citation
1. Calcyclin is an early vasopressin-induced gene in the renal collecting duct. Role in the long term regulation of ion transport. Courtois-Coutry N, etal., J Biol Chem 2002 Jul 12;277(28):25728-34.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:2358072   PMID:2448309   PMID:8634083   PMID:10673048   PMID:10913138   PMID:11937060   PMID:12042313   PMID:12118070   PMID:12477932   PMID:12577318   PMID:12601007   PMID:12805373  
PMID:15502186   PMID:15652358   PMID:18753141   PMID:19056867   PMID:19199708   PMID:19724273   PMID:20027335   PMID:21663912   PMID:22206666   PMID:23376485   PMID:25480733   PMID:27068509  
PMID:28174168   PMID:31916625   PMID:33942537  



S100a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,398,189 - 178,399,763 (+)NCBIGRCr8
mRatBN7.22176,100,619 - 176,102,181 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,100,899 - 176,102,180 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,241,176 - 183,242,401 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,263,442 - 181,264,667 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,863,300 - 175,864,525 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02190,007,013 - 190,008,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2190,007,216 - 190,008,511 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,441,142 - 209,442,605 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,895,080 - 182,896,305 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,845,185 - 182,846,411 (+)NCBI
Celera2170,035,682 - 170,036,907 (+)NCBICelera
Cytogenetic Map2q34NCBI
S100A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,534,599 - 153,535,991 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,534,599 - 153,536,244 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,507,075 - 153,508,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,773,700 - 151,775,341 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,320,148 - 150,321,790NCBI
Celera1126,578,337 - 126,579,978 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,870,339 - 124,871,980 (-)NCBIHuRef
CHM1_11154,903,041 - 154,904,682 (-)NCBICHM1_1
T2T-CHM13v2.01152,671,855 - 152,673,247 (-)NCBIT2T-CHM13v2.0
S100a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,520,491 - 90,531,797 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,520,189 - 90,531,488 (+)EnsemblGRCm39 Ensembl
GRCm38390,612,894 - 90,614,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,612,882 - 90,624,181 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,416,816 - 90,418,336 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,699,111 - 90,700,341 (+)NCBIMGSCv36mm8
Celera390,654,296 - 90,655,816 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.35NCBI
S100A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,297,611 - 96,299,362 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,032,847 - 96,034,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,889,749 - 128,891,425 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,518,834 - 132,520,499 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,518,834 - 132,520,499 (-)Ensemblpanpan1.1panPan2
S100A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,501,430 - 43,503,100 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,501,989 - 43,541,604 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,994,834 - 42,995,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,451,601 - 43,452,754 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1743,153,876 - 43,155,021 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,207,730 - 43,208,875 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,491,387 - 43,492,538 (+)NCBIUU_Cfam_GSD_1.0
S100a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,316,803 - 24,317,471 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,347,152 - 3,348,105 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,347,185 - 3,347,878 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,098,525 - 96,099,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,098,264 - 96,099,686 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
S100A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,267,708 - 10,269,361 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,267,556 - 10,269,405 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,659,199 - 9,660,869 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in S100a6
14 total Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
2 209442439 209442440 G T snv DOB/Oda (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000015612
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 65 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat

1 to 10 of 65 rows
RH128207  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82178,399,218 - 178,399,718 (+)Marker Load Pipeline
mRatBN7.22176,101,636 - 176,102,136 (+)MAPPERmRatBN7.2
Rnor_6.02190,007,968 - 190,008,467NCBIRnor6.0
Rnor_5.02209,442,061 - 209,442,560UniSTSRnor5.0
RGSC_v3.42182,895,762 - 182,896,261UniSTSRGSC3.4
Celera2170,036,364 - 170,036,863UniSTS
RH 3.4 Map21188.5UniSTS
Cytogenetic Map2q34UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 30 rows
RefSeq Transcripts NM_053485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC097705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF140232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ132717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U31867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 30 rows

Ensembl Acc Id: ENSRNOT00000015612   ⟹   ENSRNOP00000015612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2176,100,899 - 176,102,180 (+)Ensembl
Rnor_6.0 Ensembl2190,007,216 - 190,008,511 (+)Ensembl
RefSeq Acc Id: NM_053485   ⟹   NP_445937
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,398,537 - 178,399,762 (+)NCBI
mRatBN7.22176,100,955 - 176,102,180 (+)NCBI
Rnor_6.02190,007,286 - 190,008,511 (+)NCBI
Rnor_5.02209,441,142 - 209,442,605 (+)NCBI
RGSC_v3.42182,895,080 - 182,896,305 (+)RGD
Celera2170,035,682 - 170,036,907 (+)RGD
Sequence:
RefSeq Acc Id: XM_006232779   ⟹   XP_006232841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,398,227 - 178,399,763 (+)NCBI
mRatBN7.22176,100,656 - 176,102,181 (+)NCBI
Rnor_6.02190,007,013 - 190,008,512 (+)NCBI
Rnor_5.02209,441,142 - 209,442,605 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103273   ⟹   XP_038959201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,398,189 - 178,399,763 (+)NCBI
mRatBN7.22176,100,619 - 176,102,181 (+)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_445937 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232841 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959201 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66598 (Get FASTA)   NCBI Sequence Viewer  
  AAK28306 (Get FASTA)   NCBI Sequence Viewer  
  CAB42002 (Get FASTA)   NCBI Sequence Viewer  
  EDM00539 (Get FASTA)   NCBI Sequence Viewer  
  EDM00540 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015612
  ENSRNOP00000015612.2
GenBank Protein P05964 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_445937   ⟸   NM_053485
- UniProtKB: Q9R2B7 (UniProtKB/Swiss-Prot),   P05964 (UniProtKB/Swiss-Prot),   B2GVB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232841   ⟸   XM_006232779
- Peptide Label: isoform X1
- UniProtKB: Q9R2B7 (UniProtKB/Swiss-Prot),   P05964 (UniProtKB/Swiss-Prot),   B2GVB1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015612   ⟸   ENSRNOT00000015612
RefSeq Acc Id: XP_038959201   ⟸   XM_039103273
- Peptide Label: isoform X1
- UniProtKB: P05964 (UniProtKB/Swiss-Prot),   Q9R2B7 (UniProtKB/Swiss-Prot),   B2GVB1 (UniProtKB/TrEMBL)
EF-hand

Name Modeler Protein Id AA Range Protein Structure
AF-P05964-F1-model_v2 AlphaFold P05964 1-89 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13691509
Promoter ID:EPDNEW_R2034
Type:multiple initiation site
Name:S100a6_1
Description:S100 calcium binding protein A6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02190,007,262 - 190,007,322EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-52326 BioCyc
Ensembl Genes ENSRNOG00000011647 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015612 ENTREZGENE
  ENSRNOT00000015612.6 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7931905 IMAGE-MGC_LOAD
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  S-100A6 UniProtKB/Swiss-Prot
  S100/CaBP-9k_CS UniProtKB/Swiss-Prot
  S100_Ca-bd_sub UniProtKB/Swiss-Prot
KEGG Report rno:85247 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188372 IMAGE-MGC_LOAD
NCBI Gene 85247 ENTREZGENE
PANTHER PROTEIN S100-A6 UniProtKB/Swiss-Prot
  S100 CALCIUM-BINDING PROTEIN UniProtKB/Swiss-Prot
Pfam S_100 UniProtKB/Swiss-Prot
PhenoGen S100a6 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
  S100_CABP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011647 RatGTEx
SMART EFh UniProtKB/Swiss-Prot
  S_100 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
UniProt B2GVB1 ENTREZGENE, UniProtKB/TrEMBL
  P05964 ENTREZGENE
  Q9R2B7 ENTREZGENE
  S10A6_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9R2B7 UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 S100a6  S100 calcium binding protein A6  S100a6  S100 calcium binding protein A6 (calcyclin)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 S100a6  S100 calcium binding protein A6 (calcyclin)    calcium binding protein A6 (calcyclin)  Name updated 1299863 APPROVED
2002-08-07 S100a6  calcium binding protein A6 (calcyclin)      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression expressed in the glomerulus, the collecting duct, and in the epithelium lining the papilla of the kidney 633924
gene_regulation mRNA expression is increased by arginine vasopressin 633924