Ubap2l (ubiquitin associated protein 2-like) - Rat Genome Database

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Gene: Ubap2l (ubiquitin associated protein 2-like) Rattus norvegicus
Analyze
Symbol: Ubap2l
Name: ubiquitin associated protein 2-like
RGD ID: 1308707
Description: Predicted to be involved in several processes, including binding activity of sperm to zona pellucida; hematopoietic stem cell homeostasis; and positive regulation of stress granule assembly. Predicted to be part of PcG protein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBAP2L (ubiquitin associated protein 2 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Atp8b2; Atpase, class I, type 8B, member 2; EP1; LOC361984; similar to ubiquitin-associated protein 2-like isoform 1; ubiquitin-associated protein 2-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,736,378 - 177,791,746 (-)NCBIGRCr8
mRatBN7.22175,438,703 - 175,494,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,438,703 - 175,493,998 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,585,047 - 182,640,443 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,607,425 - 180,662,830 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,208,128 - 175,263,431 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,334,341 - 189,400,334 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,334,341 - 189,400,323 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,766,347 - 208,832,798 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,236,653 - 182,274,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,188,831 - 182,224,512 (-)NCBI
Celera2169,378,164 - 169,433,055 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-bromohexadecanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
chlorpyrifos  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
fipronil  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
josamycin  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:18838386   PMID:19945174   PMID:22658674   PMID:22681889   PMID:25002582   PMID:25185265   PMID:26240149   PMID:29395067   PMID:30361391   PMID:35352799  


Genomics

Comparative Map Data
Ubap2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,736,378 - 177,791,746 (-)NCBIGRCr8
mRatBN7.22175,438,703 - 175,494,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,438,703 - 175,493,998 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,585,047 - 182,640,443 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,607,425 - 180,662,830 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,208,128 - 175,263,431 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,334,341 - 189,400,334 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,334,341 - 189,400,323 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,766,347 - 208,832,798 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,236,653 - 182,274,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,188,831 - 182,224,512 (-)NCBI
Celera2169,378,164 - 169,433,055 (-)NCBICelera
Cytogenetic Map2q34NCBI
UBAP2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,220,172 - 154,271,510 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,220,179 - 154,271,510 (+)EnsemblGRCh38hg38GRCh38
GRCh371154,192,648 - 154,243,986 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,460,067 - 152,509,953 (+)NCBINCBI36Build 36hg18NCBI36
Build 341151,010,630 - 151,056,401NCBI
Celera1127,264,371 - 127,315,051 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,556,311 - 125,607,005 (+)NCBIHuRef
CHM1_11155,588,964 - 155,639,662 (+)NCBICHM1_1
T2T-CHM13v2.01153,357,369 - 153,408,720 (+)NCBIT2T-CHM13v2.0
Ubap2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,906,896 - 89,959,867 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,907,447 - 89,959,935 (-)EnsemblGRCm39 Ensembl
GRCm38389,999,589 - 90,052,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,000,140 - 90,052,628 (-)EnsemblGRCm38mm10GRCm38
MGSCv37389,803,511 - 89,856,437 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,086,067 - 90,138,392 (-)NCBIMGSCv36mm8
Celera390,036,129 - 90,089,047 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.19NCBI
Ubap2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545768,058 - 815,632 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545767,265 - 815,632 (+)NCBIChiLan1.0ChiLan1.0
UBAP2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,562,493 - 95,613,638 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,297,724 - 95,349,197 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,575,115 - 129,626,565 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,189,194 - 133,240,090 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,189,194 - 133,240,090 (+)Ensemblpanpan1.1panPan2
UBAP2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,973,598 - 43,015,007 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,974,092 - 43,010,848 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,463,992 - 42,505,420 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,843,514 - 42,885,522 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1742,622,858 - 42,664,296 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,676,123 - 42,717,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,960,214 - 43,001,682 (-)NCBIUU_Cfam_GSD_1.0
Ubap2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,883,283 - 24,929,500 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,914,468 - 3,959,789 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,913,460 - 3,960,026 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBAP2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,471,126 - 95,520,425 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,471,122 - 95,519,800 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,388,405 - 104,436,880 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBAP2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,546,201 - 9,591,728 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,545,581 - 9,591,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,904,155 - 8,961,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubap2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,043,328 - 3,089,664 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,043,328 - 3,089,657 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubap2l
187 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:85
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000024364
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
61457Niddm8Non-insulin dependent diabetes mellitus QTL 84.10.01blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2174543008175950118Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
61473Bp19Blood pressure QTL 196.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921175950118Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072175950118Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2152413072175950118Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072175950118Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072175950118Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072175950118Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2152413072175950118Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
7488904Bp363Blood pressure QTL 3630.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2172982062175950118Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC333996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000024364   ⟹   ENSRNOP00000024364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,438,703 - 175,493,982 (-)Ensembl
Rnor_6.0 Ensembl2189,334,341 - 189,400,323 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089042   ⟹   ENSRNOP00000070602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,439,273 - 175,493,973 (-)Ensembl
Rnor_6.0 Ensembl2189,334,780 - 189,395,746 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101660   ⟹   ENSRNOP00000096813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,440,592 - 175,493,998 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112048   ⟹   ENSRNOP00000084271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,445,728 - 175,493,622 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116567   ⟹   ENSRNOP00000091988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,439,551 - 175,493,977 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117564   ⟹   ENSRNOP00000082678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,439,551 - 175,493,977 (-)Ensembl
RefSeq Acc Id: NM_001024798   ⟹   NP_001019969
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,378 - 177,791,646 (-)NCBI
mRatBN7.22175,438,703 - 175,493,982 (-)NCBI
Rnor_6.02189,334,341 - 189,400,323 (-)NCBI
Rnor_5.02208,766,347 - 208,832,798 (-)NCBI
RGSC_v3.42182,236,653 - 182,274,323 (-)RGD
Celera2169,378,164 - 169,433,055 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102661   ⟹   XP_038958589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
mRatBN7.22175,439,413 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102663   ⟹   XP_038958591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
mRatBN7.22175,439,413 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102664   ⟹   XP_038958592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
mRatBN7.22175,439,413 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102666   ⟹   XP_038958594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
mRatBN7.22175,439,413 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102667   ⟹   XP_038958595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,787,071 (-)NCBI
mRatBN7.22175,439,198 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102674   ⟹   XP_038958602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
mRatBN7.22175,439,413 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102675   ⟹   XP_038958603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
mRatBN7.22175,439,413 - 175,489,404 (-)NCBI
RefSeq Acc Id: XM_039102677   ⟹   XP_038958605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
mRatBN7.22175,439,413 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102681   ⟹   XP_038958609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,787,071 (-)NCBI
mRatBN7.22175,439,198 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102683   ⟹   XP_038958611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,787,071 (-)NCBI
mRatBN7.22175,439,198 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102685   ⟹   XP_038958613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,787,071 (-)NCBI
mRatBN7.22175,439,198 - 175,494,024 (-)NCBI
RefSeq Acc Id: XM_039102686   ⟹   XP_038958614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,746 (-)NCBI
mRatBN7.22175,459,713 - 175,494,085 (-)NCBI
RefSeq Acc Id: XM_063282127   ⟹   XP_063138197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
RefSeq Acc Id: XM_063282128   ⟹   XP_063138198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
RefSeq Acc Id: XM_063282129   ⟹   XP_063138199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,790,565 (-)NCBI
RefSeq Acc Id: XM_063282130   ⟹   XP_063138200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282131   ⟹   XP_063138201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,647 (-)NCBI
RefSeq Acc Id: XM_063282132   ⟹   XP_063138202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282133   ⟹   XP_063138203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282134   ⟹   XP_063138204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,485 (-)NCBI
RefSeq Acc Id: XM_063282135   ⟹   XP_063138205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
RefSeq Acc Id: XM_063282136   ⟹   XP_063138206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282137   ⟹   XP_063138207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282138   ⟹   XP_063138208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282139   ⟹   XP_063138209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,787,071 (-)NCBI
RefSeq Acc Id: XM_063282140   ⟹   XP_063138210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,737 (-)NCBI
RefSeq Acc Id: XM_063282141   ⟹   XP_063138211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,787,071 (-)NCBI
RefSeq Acc Id: XM_063282142   ⟹   XP_063138212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,647 (-)NCBI
RefSeq Acc Id: XM_063282144   ⟹   XP_063138214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,485 (-)NCBI
RefSeq Acc Id: XM_063282145   ⟹   XP_063138215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282146   ⟹   XP_063138216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,647 (-)NCBI
RefSeq Acc Id: XM_063282147   ⟹   XP_063138217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,746 (-)NCBI
RefSeq Acc Id: XM_063282148   ⟹   XP_063138218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282149   ⟹   XP_063138219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,647 (-)NCBI
RefSeq Acc Id: XM_063282150   ⟹   XP_063138220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282151   ⟹   XP_063138221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,740 (-)NCBI
RefSeq Acc Id: XM_063282152   ⟹   XP_063138222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,737,333 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282155   ⟹   XP_063138225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282156   ⟹   XP_063138226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282157   ⟹   XP_063138227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,736,942 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282158   ⟹   XP_063138228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282159   ⟹   XP_063138229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,737 (-)NCBI
RefSeq Acc Id: XM_063282160   ⟹   XP_063138230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,647 (-)NCBI
RefSeq Acc Id: XM_063282161   ⟹   XP_063138231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,647 (-)NCBI
RefSeq Acc Id: XM_063282162   ⟹   XP_063138232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282163   ⟹   XP_063138233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282164   ⟹   XP_063138234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,493 (-)NCBI
RefSeq Acc Id: XM_063282165   ⟹   XP_063138235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,743,399 - 177,791,682 (-)NCBI
RefSeq Acc Id: XM_063282166   ⟹   XP_063138236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82177,757,849 - 177,790,565 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001019969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958594 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958595 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958609 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958611 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958613 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958614 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138197 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138198 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138199 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138200 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138201 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138202 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138203 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138204 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138205 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138206 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138207 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138208 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138209 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138210 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138211 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138212 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138214 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138215 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138216 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138217 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138218 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138219 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138220 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138221 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138222 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138225 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138226 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138227 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138228 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138229 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138230 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138231 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138232 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138233 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138234 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138235 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138236 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97468 (Get FASTA)   NCBI Sequence Viewer  
  EDM00600 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024364.6
  ENSRNOP00000070602.1
  ENSRNOP00000082678.1
  ENSRNOP00000084271.1
  ENSRNOP00000091988.1
  ENSRNOP00000096813.1
RefSeq Acc Id: NP_001019969   ⟸   NM_001024798
- UniProtKB: E9PTR4 (UniProtKB/TrEMBL),   A6J6I9 (UniProtKB/TrEMBL),   A0A8I6ARP3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070602   ⟸   ENSRNOT00000089042
Ensembl Acc Id: ENSRNOP00000024364   ⟸   ENSRNOT00000024364
RefSeq Acc Id: XP_038958613   ⟸   XM_039102685
- Peptide Label: isoform X34
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958609   ⟸   XM_039102681
- Peptide Label: isoform X30
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958611   ⟸   XM_039102683
- Peptide Label: isoform X32
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958595   ⟸   XM_039102667
- Peptide Label: isoform X8
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958602   ⟸   XM_039102674
- Peptide Label: isoform X17
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958592   ⟸   XM_039102664
- Peptide Label: isoform X5
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958591   ⟸   XM_039102663
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958605   ⟸   XM_039102677
- Peptide Label: isoform X23
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958594   ⟸   XM_039102666
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958589   ⟸   XM_039102661
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958603   ⟸   XM_039102675
- Peptide Label: isoform X20
- UniProtKB: A0A8I6ARP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958614   ⟸   XM_039102686
- Peptide Label: isoform X37
Ensembl Acc Id: ENSRNOP00000091988   ⟸   ENSRNOT00000116567
Ensembl Acc Id: ENSRNOP00000084271   ⟸   ENSRNOT00000112048
Ensembl Acc Id: ENSRNOP00000082678   ⟸   ENSRNOT00000117564
Ensembl Acc Id: ENSRNOP00000096813   ⟸   ENSRNOT00000101660
RefSeq Acc Id: XP_063138217   ⟸   XM_063282147
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063138210   ⟸   XM_063282140
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063138227   ⟸   XM_063282157
- Peptide Label: isoform X33
- UniProtKB: A0A0G2JYC6 (UniProtKB/TrEMBL),   A6J6I8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138225   ⟸   XM_063282155
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063138220   ⟸   XM_063282150
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063138218   ⟸   XM_063282148
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063138226   ⟸   XM_063282156
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063138219   ⟸   XM_063282149
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063138216   ⟸   XM_063282146
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063138212   ⟸   XM_063282142
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063138211   ⟸   XM_063282141
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063138221   ⟸   XM_063282151
- Peptide Label: isoform X27
- UniProtKB: A0A8I6ACU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138222   ⟸   XM_063282152
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063138208   ⟸   XM_063282138
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063138207   ⟸   XM_063282137
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063138206   ⟸   XM_063282136
- Peptide Label: isoform X13
- UniProtKB: A0A8I5ZUK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138215   ⟸   XM_063282145
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063138203   ⟸   XM_063282133
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063138202   ⟸   XM_063282132
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138200   ⟸   XM_063282130
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063138201   ⟸   XM_063282131
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138214   ⟸   XM_063282144
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063138204   ⟸   XM_063282134
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063138199   ⟸   XM_063282129
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063138209   ⟸   XM_063282139
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063138205   ⟸   XM_063282135
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063138198   ⟸   XM_063282128
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063138197   ⟸   XM_063282127
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138229   ⟸   XM_063282159
- Peptide Label: isoform X36
- UniProtKB: A0A8I5ZWV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138235   ⟸   XM_063282165
- Peptide Label: isoform X40
RefSeq Acc Id: XP_063138232   ⟸   XM_063282162
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063138233   ⟸   XM_063282163
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063138228   ⟸   XM_063282158
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063138231   ⟸   XM_063282161
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063138230   ⟸   XM_063282160
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063138234   ⟸   XM_063282164
- Peptide Label: isoform X40
RefSeq Acc Id: XP_063138236   ⟸   XM_063282166
- Peptide Label: isoform X41
- UniProtKB: Q4V8A7 (UniProtKB/TrEMBL)
Protein Domains
UBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTR4-F1-model_v2 AlphaFold E9PTR4 1-1105 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691487
Promoter ID:EPDNEW_R2012
Type:initiation region
Name:Ubap2l_1
Description:ubiquitin associated protein 2-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02189,400,314 - 189,400,374EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308707 AgrOrtholog
BioCyc Gene G2FUF-52375 BioCyc
Ensembl Genes ENSRNOG00000017990 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024364.8 UniProtKB/TrEMBL
  ENSRNOT00000089042.2 UniProtKB/TrEMBL
  ENSRNOT00000101660.1 UniProtKB/TrEMBL
  ENSRNOT00000112048.1 UniProtKB/TrEMBL
  ENSRNOT00000116567.1 UniProtKB/TrEMBL
  ENSRNOT00000117564.1 UniProtKB/TrEMBL
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro DUF3697_Uba2 UniProtKB/TrEMBL
  TC-DDR_regulator UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  UBA/transl_elong_EF1B_N_euk UniProtKB/TrEMBL
KEGG Report rno:361984 UniProtKB/TrEMBL
NCBI Gene 361984 ENTREZGENE
PANTHER UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER UniProtKB/TrEMBL
  UBIQUITIN-ASSOCIATED PROTEIN 2-LIKE UniProtKB/TrEMBL
Pfam DUF3697 UniProtKB/TrEMBL
PhenoGen Ubap2l PhenoGen
PROSITE UBA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017990 RatGTEx
SMART UBA UniProtKB/TrEMBL
Superfamily-SCOP UBA_like UniProtKB/TrEMBL
UniProt A0A0G2JYC6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARP3 ENTREZGENE, UniProtKB/TrEMBL
  A6J6I8 ENTREZGENE, UniProtKB/TrEMBL
  A6J6I9 ENTREZGENE, UniProtKB/TrEMBL
  E9PTR4 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8A7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-17 Ubap2l  ubiquitin associated protein 2-like  LOC361984  similar to ubiquitin-associated protein 2-like isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-21 LOC361984  similar to ubiquitin-associated protein 2-like isoform 1  Atp8b2  Atpase, class I, type 8B, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Atp8b2  Atpase, class I, type 8B, member 2  Atp8b2_predicted  Atpase, class I, type 8B, member 2 (predicted)  Symbol and Name updated 1559027 APPROVED