Sv2a (synaptic vesicle glycoprotein 2a)

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Gene: Sv2a (synaptic vesicle glycoprotein 2a) Rattus norvegicus

Analyze

Symbol:

Sv2a

Name:

synaptic vesicle glycoprotein 2a

RGD ID:

619715

Description:

Predicted to enable protein kinase binding activity. Involved in regulation of gamma-aminobutyric acid secretion. Located in several cellular components, including neuronal cell body; presynaptic active zone; and synaptic vesicle membrane. Is integral component of membrane. Is integral component of synaptic vesicle membrane. Orthologous to human SV2A (synaptic vesicle glycoprotein 2A); PARTICIPATES IN cell-extracellular matrix signaling pathway; INTERACTS WITH acrylamide; ammonium chloride; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

MGC105346; Sv2; synaptic vesicle glycoprotein 2 a; synaptic vesicle protein 2; synaptic vesicle protein 2A; synaptic vesicle transmembrane transporter (SV2) RNA

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SV2A (synaptic vesicle glycoprotein 2A)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Sv2a (synaptic vesicle glycoprotein 2 a)	HGNC	Treefam, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Sv2a (synaptic vesicle glycoprotein 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SV2A (synaptic vesicle glycoprotein 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SV2A (synaptic vesicle glycoprotein 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sv2a (synaptic vesicle glycoprotein 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SV2A (synaptic vesicle glycoprotein 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SV2A (synaptic vesicle glycoprotein 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sv2a (synaptic vesicle glycoprotein 2A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Sv2a (synaptic vesicle glycoprotein 2 a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	SV2A (synaptic vesicle glycoprotein 2A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	sv2a (synaptic vesicle glycoprotein 2A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG3168	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|TreeFam)

Allele / Splice:

Sv2a^m1Kyo

Genetic Models:

F344-Sv2a^m1Kyo

Is Marker For:

Strains: F344-Sv2a^m1Kyo

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	183,741,455 - 183,757,290 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	183,741,547 - 183,756,927 (+)	Ensembl
Rnor_6.0	2	198,321,100 - 198,336,889 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	198,321,142 - 198,336,913 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	217,808,165 - 217,823,872 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,989,187 - 191,000,859 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	190,948,188 - 190,963,566 (+)	NCBI
Celera	2	176,272,713 - 176,284,621 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Seizures (IMP)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

spinal muscular atrophy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

acrylamide (EXP)

ammonium chloride (EXP)

aristolochic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Botulinum toxin type A (ISO)

cadmium dichloride (EXP)

carbamazepine (ISO)

cholesterol (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

flavonoids (EXP)

fonofos (ISO)

gamma-tocopherol (ISO)

glyphosate (EXP)

heroin (ISO)

hydrogen sulfide (ISO)

ivermectin (ISO)

Licochalcone B (ISO)

methyl beta-cyclodextrin (ISO)

oxaliplatin (EXP)

parathion (ISO)

PCB138 (EXP)

potassium chromate (ISO)

Ptaquiloside (ISO)

pyrogallol (ISO)

SB 431542 (ISO)

sunitinib (ISO)

terbufos (ISO)

tocopherol (ISO)

topotecan (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular calcium ion homeostasis (ISO)

neurotransmitter transport (TAS)

regulation of gamma-aminobutyric acid secretion (IMP)

synaptic vesicle priming (ISO)

transmembrane transport (IEA)

Cellular Component

cell-cell junction (ISO)

dendrite (IDA)

endoplasmic reticulum (IEA,ISO)

GABA-ergic synapse (ISO)

glutamatergic synapse (ISO)

integral component of membrane (IBA,IDA)

integral component of synaptic vesicle membrane (EXP,IDA)

neuromuscular junction (ISO)

neuron projection (IBA,ISO)

neuronal cell body (IDA)

presynaptic active zone (IDA,ISO)

synapse (IDA)

synaptic vesicle (IDA,ISO)

synaptic vesicle membrane (IBA,IDA)

terminal bouton (HDA)

Molecular Function

protein binding (IPI)

protein kinase binding (ISO)

transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

cell-extracellular matrix signaling pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased kindling response (IMP)

increased susceptibility to pharmacologically induced seizures (IMP)

References

References - curated


1.	Bajjalieh SM, etal., Science 1992 Aug 28;257(5074):1271-3.
2.	Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Maas C, etal., J Neurosci. 2012 Aug 8;32(32):11095-108. doi: 10.1523/JNEUROSCI.0195-12.2012.
5.	MGD data from the GO Consortium
6.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	Nensa FM, etal., Mol Cell Proteomics. 2014 Feb;13(2):475-88. doi: 10.1074/mcp.M113.029280. Epub 2013 Nov 27.
8.	Pellet JB, etal., Eur J Neurosci. 2000 Feb;12(2):621-32.
9.	Pipeline to import KEGG annotations from KEGG into RGD
10.	RGD automated data pipeline
11.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	RGD automated import pipeline for gene-chemical interactions
13.	Schivell AE, etal., J Biol Chem. 1996 Nov 1;271(44):27770-5.
14.	Strotmeier J, etal., FEBS Lett. 2014 Apr 2;588(7):1087-93. doi: 10.1016/j.febslet.2014.02.034. Epub 2014 Feb 25.
15.	Takamori S, etal., Cell. 2006 Nov 17;127(4):831-46.
16.	Tejero R, etal., Hum Mol Genet. 2016 Aug 29. pii: ddw297.
17.	Tokudome K, etal., Sci Rep. 2016 Jun 6;6:27420. doi: 10.1038/srep27420.
18.	Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.

Additional References at PubMed

PMID:1355409	PMID:1426240	PMID:10455054	PMID:10624962	PMID:10625067	PMID:10747945	PMID:12074840	PMID:12477932	PMID:12687700	PMID:15210974	PMID:15489334	PMID:15713258
PMID:15866046	PMID:16306227	PMID:16543415	PMID:18524768	PMID:19176798	PMID:20410110	PMID:21307259	PMID:21664258	PMID:22871113	PMID:23530581	PMID:24035762	PMID:25205164
PMID:26489628	PMID:29476059	PMID:30336420	PMID:30905653	PMID:32407277	PMID:32538280

Genomics

Comparative Map Data

Sv2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	183,741,455 - 183,757,290 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	2	183,741,547 - 183,756,927 (+)	Ensembl
Rnor_6.0	2	198,321,100 - 198,336,889 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	198,321,142 - 198,336,913 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	217,808,165 - 217,823,872 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	190,989,187 - 191,000,859 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	190,948,188 - 190,963,566 (+)	NCBI
Celera	2	176,272,713 - 176,284,621 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

SV2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	149,903,318 - 149,917,844 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	149,903,318 - 149,917,844 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	149,874,870 - 149,889,396 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	148,141,859 - 148,156,054 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	1	122,990,840 - 123,005,404 (-)	NCBI
Cytogenetic Map	1	q21.2	NCBI
HuRef	1	121,255,354 - 121,269,918 (-)	NCBI		HuRef
CHM1_1	1	151,271,444 - 151,286,008 (-)	NCBI		CHM1_1

Sv2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	96,088,543 - 96,102,499 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	3	96,088,467 - 96,102,837 (+)	Ensembl
GRCm38	3	96,181,227 - 96,195,183 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	96,181,151 - 96,195,521 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	95,985,150 - 95,999,106 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	96,266,632 - 96,280,588 (+)	NCBI			mm8
Celera	3	97,620,657 - 97,631,186 (+)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI

Sv2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	834,743 - 851,023 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	834,743 - 849,176 (+)	NCBI	ChiLan1.0	ChiLan1.0

SV2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	128,904,140 - 128,918,829 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	128,904,151 - 128,918,829 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	125,247,429 - 125,262,041 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SV2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	59,185,715 - 59,195,888 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	59,187,244 - 59,195,888 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	58,633,794 - 58,647,878 (-)	NCBI
ROS_Cfam_1.0	17	60,182,727 - 60,196,808 (-)	NCBI
UMICH_Zoey_3.1	17	59,032,197 - 59,046,284 (-)	NCBI
UNSW_CanFamBas_1.0	17	59,115,941 - 59,130,018 (-)	NCBI
UU_Cfam_GSD_1.0	17	59,843,004 - 59,857,105 (-)	NCBI

Sv2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	21,213,447 - 21,227,353 (-)	NCBI
SpeTri2.0	NW_004936580	243,829 - 257,708 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SV2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	99,138,342 - 99,153,149 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	99,138,319 - 99,153,153 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	108,567,034 - 108,581,274 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SV2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	13,389,665 - 13,404,056 (+)	NCBI	Vero_WHO_p1.0

Sv2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624772	17,684,061 - 17,698,728 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D2Got117

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	183,743,287 - 183,743,468 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,322,923 - 198,323,103	NCBI	Rnor6.0
Rnor_5.0	2	217,809,906 - 217,810,086	UniSTS	Rnor5.0
RGSC_v3.4	2	190,987,175 - 190,987,356	RGD	RGSC3.4
RGSC_v3.4	2	190,987,176 - 190,987,356	UniSTS	RGSC3.4
RGSC_v3.1	2	190,949,930 - 190,950,110	RGD
Celera	2	176,270,702 - 176,270,882	UniSTS
RH 3.4 Map	2	1221.5	UniSTS
RH 3.4 Map	2	1221.5	RGD
RH 2.0 Map	2	901.2	RGD
Cytogenetic Map	2	q34	UniSTS

D2Wox49

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	183,756,199 - 183,756,468 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,335,799 - 198,336,067	NCBI	Rnor6.0
Rnor_5.0	2	217,822,782 - 217,823,050	UniSTS	Rnor5.0
RGSC_v3.4	2	191,000,085 - 191,000,353	UniSTS	RGSC3.4
Celera	2	176,283,847 - 176,284,115	UniSTS
Cytogenetic Map	2	q34	UniSTS

AI746429

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	183,756,723 - 183,756,829 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,336,323 - 198,336,428	NCBI	Rnor6.0
Rnor_5.0	2	217,823,306 - 217,823,411	UniSTS	Rnor5.0
RGSC_v3.4	2	191,000,609 - 191,000,714	UniSTS	RGSC3.4
Celera	2	176,284,371 - 176,284,476	UniSTS
Cytogenetic Map	2	q34	UniSTS

RH129295

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	183,757,052 - 183,757,232 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,336,652 - 198,336,831	NCBI	Rnor6.0
Rnor_5.0	2	217,823,635 - 217,823,814	UniSTS	Rnor5.0
RGSC_v3.4	2	191,000,938 - 191,001,117	UniSTS	RGSC3.4
Celera	2	176,284,700 - 176,284,879	UniSTS
RH 3.4 Map	2	1221.6	UniSTS
Cytogenetic Map	2	q34	UniSTS

RH143796

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	183,754,422 - 183,754,565 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,334,022 - 198,334,164	NCBI	Rnor6.0
Rnor_5.0	2	217,821,005 - 217,821,147	UniSTS	Rnor5.0
RGSC_v3.4	2	190,998,308 - 190,998,450	UniSTS	RGSC3.4
Celera	2	176,282,070 - 176,282,212	UniSTS
RH 3.4 Map	2	1221.4	UniSTS
Cytogenetic Map	2	q34	UniSTS

BE119349

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	183,740,816 - 183,740,982 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,320,452 - 198,320,617	NCBI	Rnor6.0
Rnor_5.0	2	217,807,435 - 217,807,600	UniSTS	Rnor5.0
RGSC_v3.4	2	190,984,705 - 190,984,870	UniSTS	RGSC3.4
Celera	2	176,268,103 - 176,268,268	UniSTS
RH 3.4 Map	2	1221.5	UniSTS
Cytogenetic Map	2	q34	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat

Related Rat Strains

The following Strains have been annotated to Sv2a

F344-Sv2a^m1Kyo

Genetic Models

This gene Sv2a is modified in the following models/strains

F344-Sv2a^m1Kyo

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	330
Count of miRNA genes:	214
Interacting mature miRNAs:	257
Transcripts:	ENSRNOT00000028760
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		16	2	2		2			68	22	17
Low	3	27	53	37	19	37	7	10	6	13	19	11	7
Below cutoff			2	2		2	1	1			5		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_057210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CQ819363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L01788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L05435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000028760 ⟹ ENSRNOP00000028760

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	183,741,547 - 183,756,927 (+)	Ensembl
Rnor_6.0 Ensembl	2	198,321,142 - 198,336,913 (+)	Ensembl

RefSeq Acc Id:

NM_057210 ⟹ NP_476558

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	183,745,299 - 183,756,974 (+)	NCBI
Rnor_6.0	2	198,324,934 - 198,336,573 (+)	NCBI
Rnor_5.0	2	217,808,165 - 217,823,872 (+)	NCBI
RGSC_v3.4	2	190,989,187 - 191,000,859 (+)	RGD
Celera	2	176,272,713 - 176,284,621 (+)	RGD

Sequence:

show sequence

GAAAAAGAAGCAGAGAGTAAGGTAGAGCCAGTGACTCGCCCCCAAGCCCCATCATGGAAGAAGG
CTTTCGAGACCGAGCAGCGTTCATCCGTGGGGCCAAAGACATTGCCAAGGAAGTTAAGAAGCAC
GCGGCCAAGAAGGTGGTGAAGGGTCTCGACAGAGTCCAGGATGAATATTCCCGAAGGTCCTACT
CCCGCTTTGAGGAGGAGGAGGATGATGATGACTTCCCTGCCCCTGCTGACGGCTATTACCGCGG
AGAAGGGGCCCAGGATGAGGAGGAAGGTGGCGCTTCCAGTGATGCCACTGAGGGCCACGATGAG
GATGATGAGATCTACGAGGGAGAATATCAGGGCATCCCCCGGGCAGAGTCTGGGGGCAAAGGCG
AACGGATGGCAGATGGGGCACCCCTGGCTGGAGTGAGAGGGGGCTTAAGTGATGGGGAGGGTCC
CCCTGGGGGTCGCGGGGAGGCGCAGCGGCGTAAAGATCGGGAAGAATTGGCTCAGCAGTATGAG
ACCATCCTCCGGGAGTGCGGCCATGGTCGCTTCCAGTGGACACTCTACTTCGTGCTGGGTCTGG
CGCTGATGGCCGATGGTGTAGAGGTCTTTGTGGTGGGCTTTGTGCTGCCCAGTGCTGAGAAAGA
TATGTGCCTGTCGGACTCCAACAAAGGCATGCTAGGCCTCATTGTGTACCTGGGCATGATGGTG
GGGGCCTTCCTCTGGGGAGGCCTGGCTGATCGGCTGGGTCGGAGACAGTGTCTGCTCATCTCGC
TCTCAGTCAACAGCGTCTTCGCTTTCTTCTCATCCTTCGTCCAGGGTTATGGCACCTTCCTTTT
CTGCCGCCTCCTTTCTGGGGTTGGGATTGGTGGTTCCATCCCCATTGTCTTCTCCTATTTTTCG
GAGTTTCTGGCCCAGGAGAAACGTGGGGAGCATTTGAGCTGGCTCTGTATGTTCTGGATGATTG
GTGGCGTGTATGCAGCTGCAATGGCCTGGGCCATCATCCCCCACTATGGGTGGAGTTTCCAGAT
GGGCTCTGCTTACCAGTTCCACAGCTGGAGGGTCTTTGTCCTCGTCTGTGCCTTTCCCTCTGTG
TTTGCCATCGGGGCTCTGACTACGCAGCCGGAGAGTCCCCGCTTCTTCTTAGAGAATGGGAAGC
ACGATGAGGCCTGGATGGTGCTGAAGCAGGTTCATGACACCAACATGCGAGCCAAGGGCCATCC
TGAGCGAGTCTTCTCAGTAACCCACATTAAAACGATTCATCAGGAGGATGAATTGATTGAGATC
CAGTCAGACACAGGAACCTGGTACCAGCGCTGGGGAGTGCGGGCTTTGAGCCTGGGGGGTCAGG
TTTGGGGGAACTTCCTCTCCTGCTTCAGTCCAGAGTACCGGCGCATCACTCTGATGATGATGGG
GGTATGGTTCACCATGTCCTTCAGCTACTACGGTTTGACTGTCTGGTTTCCCGACATGATCCGC
CATCTCCAGGCTGTGGACTATGCAGCCCGAACCAAAGTGTTCCCAGGGGAGCGCGTGGAGCACG
TGACATTTAACTTCACACTGGAGAATCAGATCCACCGAGGGGGACAGTACTTCAATGACAAGTT
CATCGGGCTGCGTCTGAAGTCAGTGTCCTTTGAGGATTCCCTGTTTGAGGAATGTTACTTTGAA
GATGTCACATCCAGCAACACATTCTTCCGCAACTGCACATTCATCAACACCGTGTTCTACAACA
CGGACCTGTTTGAGTACAAGTTCGTGAACAGCCGCCTGGTGAACAGCACATTCCTGCACAATAA
GGAAGGTTGCCCACTAGATGTGACAGGGACGGGCGAAGGTGCCTACATGGTGTACTTTGTCAGC
TTCTTGGGGACACTGGCTGTGCTCCCTGGAAATATTGTGTCTGCTCTGCTCATGGACAAGATTG
GCAGGCTCAGAATGCTTGCTGGTTCCAGTGTGTTGTCCTGTGTTTCCTGCTTCTTCCTGTCTTT
TGGGAACAGTGAGTCAGCCATGATCGCTCTGCTCTGCCTTTTTGGGGGAGTCAGTATTGCATCC
TGGAACGCGCTGGACGTGCTGACTGTTGAACTCTACCCTTCCGACAAGAGGACGACGGCCTTCG
GCTTCCTGAATGCCCTGTGTAAGCTGGCAGCTGTACTGGGCATCAGCATCTTCACGTCCTTTGT
GGGAATCACCAAGGCCGCTCCCATCCTCTTCGCCTCAGCTGCGCTTGCCCTTGGTAGCTCTCTG
GCTCTGAAGCTGCCTGAGACCCGGGGACAGGTGCTGCAGTGAGGGATGGGGGAGTGTCTCAGGG
GCTTTAGGGATGGCAGGCACACTGTGACCAATAATTTCTTTTATCCCTACCCTGCCCTGCTGTC
CTGGTCCTACTCCGTGTTTGGTGTCTTAGCTGTGTGCCTGTGTGCATGTGTGTGACCCTGACGG
GCAGGGGCTACGGGGAGGGTCCCTTTGTCCCATGTTTGGGAGGAGGGACTCCCCACCTGCTGCC
ACCCTCAACTTTGCACAAGGAGAAGGCTGAGCTGCATCCTTCTCTCCCTCAGTGTTAGCAGGGG
TGGGGACGACTGTTTCTCTGCTCCAGGTGTTCCAGAATTTCTGCCTTTCCCATCATTCCCTCCG
CCTAGGCCCTGGTGAACCACAGGTATGGAGTTATAGTGGGGGCTGAGGCTTGGACCAAAAGAAC
TTCTTGAGTGGGAGCCTCCCAAGGATGCTGGGGAGTAGCAATAAACCTTAGCCTCCGTTTTCAC
CTCAATTCAGGCTACAAGTGTGAAGCCTGGATTTTATGGAATTAGTTTTCTGATTCTTATTTAT
ATGTAAGTTCTGAGGCAGCTTAGCTGGACTGTGTGTGGATGTATACATACACTCATATGTGTGT
GTGTGTGCGCGCGTGCGTGTGCGTGTGTGTATGTGTGCCATGGGGTAGGGGTACCACTATACTG
TTCAATTATAAGCCAAGAGTAGTAGTTTCAGTGAGCACACACACAACACTGTTTTTCTATCGTA
ACTCCCAGAATCTTGTACCTGTGTTGGGGCTGCAGGCAGAAGTCCTTGGTCAGGCTGGGGTGAG
CCCTGCAATCTTGGGGGACCTGAGGGCACCTGACAAGGACTTTCTCCTTCCTCTAGAGAGGTTC
TACCCACTAGCCACAGCCCTCCCATCTGACCTGTCCACACAGGCAGTGTATCAGAGGAAAGAAA
GGGAAAATAACCAGGCACACATGGTCAAACCAGCAGGTCTGAAAGCACAAGAAGCTGGGGCAGG
GGCAGGAAGCAGGGGTCCATCCCCTAACCCTTCTCAAAAAGGCTGGGTCGTGAGGGACCCCTAA
TGCAGGGACCTGAAGCCTCAGTTTCCCCATCTTGCCCTTCCACAGAACAGCCTCTGTAGGTAGA
GCTGCCCCCCGTCCTACCCTACTCTTGTGGCTGCTTTCTTTGGTACTCTTCCCACTCCCACCGT
AGCTGTGACGTGTTGTAGTTTTTAGCTGTTTGTAAAATGTTAAAAAAAAAAAAAAGTTAAAAGG
AAGTTAAACTAAAAAAAAAAAAAAAAAAGAAAAA

hide sequence

RefSeq Acc Id:

XM_006232952 ⟹ XP_006233014

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	183,741,455 - 183,757,290 (+)	NCBI
Rnor_6.0	2	198,321,100 - 198,336,889 (+)	NCBI
Rnor_5.0	2	217,808,165 - 217,823,872 (+)	NCBI

Sequence:

show sequence

GGAGGCGGGGCCGGAGCGCGTGCGGGGGGCAGGTCTGCAGTGCCGCTTCCCCTGGTACCGGGAG
GAGCAGTCGTCGCTGCCGCCTCAGCCCTGTGGCTGGACCCCCTCCCTCACCCGGGGACTCCCTG
ACCCGGGGAACCAAGCTCAGGTCTCCAGAGCCTCCCAGAAGAAAAATAGGCAGCCCTCCCTGAA
ATATCTTGGCTCCTCAGTTTATCCTTTCCAACCTGGCTCCCCCTTCCCAGTTCCCCTCCCTACT
CCCTGTCTCCCTCCCCAACTCACCCTACTGAACTGGGTGCAGAGCAAAGCCCTTTTCGCCCTTT
TCCCCATCTGGACTTCTCTGGCCAGTTCCTCTTAGTCCGATCCCAAAGACACTGGAACACATTT
CTAAAGGGTCTTCTTGATCCCTCCAATTCATTGAGCAAAGGGCTGAAAAAGAAGCAGAGAGTAA
GGTAGAGCCAGTGACTCGCCCCCAAGCCCCATCATGGAAGAAGGCTTTCGAGACCGAGCAGCGT
TCATCCGTGGGGCCAAAGACATTGCCAAGGAAGTTAAGAAGCACGCGGCCAAGAAGGTGGTGAA
GGGTCTCGACAGAGTCCAGGATGAATATTCCCGAAGGTCCTACTCCCGCTTTGAGGAGGAGGAG
GATGATGATGACTTCCCTGCCCCTGCTGACGGCTATTACCGCGGAGAAGGGGCCCAGGATGAGG
AGGAAGGTGGCGCTTCCAGTGATGCCACTGAGGGCCACGATGAGGATGATGAGATCTACGAGGG
AGAATATCAGGGCATCCCCCGGGCAGAGTCTGGGGGCAAAGGCGAACGGATGGCAGATGGGGCA
CCCCTGGCTGGAGTGAGAGGGGGCTTAAGTGATGGGGAGGGTCCCCCTGGGGGTCGCGGGGAGG
CGCAGCGGCGTAAAGATCGGGAAGAATTGGCTCAGCAGTATGAGACCATCCTCCGGGAGTGCGG
CCATGGTCGCTTCCAGTGGACACTCTACTTCGTGCTGGGTCTGGCGCTGATGGCCGATGGTGTA
GAGGTCTTTGTGGTGGGCTTTGTGCTGCCCAGTGCTGAGAAAGATATGTGCCTGTCGGACTCCA
ACAAAGGCATGCTAGGCCTCATTGTGTACCTGGGCATGATGGTGGGGGCCTTCCTCTGGGGAGG
CCTGGCTGATCGGCTGGGTCGGAGACAGTGTCTGCTCATCTCGCTCTCAGTCAACAGCGTCTTC
GCTTTCTTCTCATCCTTCGTCCAGGGTTATGGCACCTTCCTTTTCTGCCGCCTCCTTTCTGGGG
TTGGGATTGGTGGTTCCATCCCCATTGTCTTCTCCTATTTTTCGGAGTTTCTGGCCCAGGAGAA
ACGTGGGGAGCATTTGAGCTGGCTCTGTATGTTCTGGATGATTGGTGGCGTGTATGCAGCTGCA
ATGGCCTGGGCCATCATCCCCCACTATGGGTGGAGTTTCCAGATGGGCTCTGCTTACCAGTTCC
ACAGCTGGAGGGTCTTTGTCCTCGTCTGTGCCTTTCCCTCTGTGTTTGCCATCGGGGCTCTGAC
TACGCAGCCGGAGAGTCCCCGCTTCTTCTTAGAGAATGGGAAGCACGATGAGGCCTGGATGGTG
CTGAAGCAGGTTCATGACACCAACATGCGAGCCAAGGGCCATCCTGAGCGAGTCTTCTCAGTAA
CCCACATTAAAACGATTCATCAGGAGGATGAATTGATTGAGATCCAGTCAGACACAGGAACCTG
GTACCAGCGCTGGGGAGTGCGGGCTTTGAGCCTGGGGGGTCAGGTTTGGGGGAACTTCCTCTCC
TGCTTCAGTCCAGAGTACCGGCGCATCACTCTGATGATGATGGGGGTATGGTTCACCATGTCCT
TCAGCTACTACGGTTTGACTGTCTGGTTTCCCGACATGATCCGCCATCTCCAGGCTGTGGACTA
TGCAGCCCGAACCAAAGTGTTCCCAGGGGAGCGCGTGGAGCACGTGACATTTAACTTCACACTG
GAGAATCAGATCCACCGAGGGGGACAGTACTTCAATGACAAGTTCATCGGGCTGCGTCTGAAGT
CAGTGTCCTTTGAGGATTCCCTGTTTGAGGAATGTTACTTTGAAGATGTCACATCCAGCAACAC
ATTCTTCCGCAACTGCACATTCATCAACACCGTGTTCTACAACACGGACCTGTTTGAGTACAAG
TTCGTGAACAGCCGCCTGGTGAACAGCACATTCCTGCACAATAAGGAAGGTTGCCCACTAGATG
TGACAGGGACGGGCGAAGGTGCCTACATGGTGTACTTTGTCAGCTTCTTGGGGACACTGGCTGT
GCTCCCTGGAAATATTGTGTCTGCTCTGCTCATGGACAAGATTGGCAGGCTCAGAATGCTTGCT
GGTTCCAGTGTGTTGTCCTGTGTTTCCTGCTTCTTCCTGTCTTTTGGGAACAGTGAGTCAGCCA
TGATCGCTCTGCTCTGCCTTTTTGGGGGAGTCAGTATTGCATCCTGGAACGCGCTGGACGTGCT
GACTGTTGAACTCTACCCTTCCGACAAGAGGACGACGGCCTTCGGCTTCCTGAATGCCCTGTGT
AAGCTGGCAGCTGTACTGGGCATCAGCATCTTCACGTCCTTTGTGGGAATCACCAAGGCCGCTC
CCATCCTCTTCGCCTCAGCTGCGCTTGCCCTTGGTAGCTCTCTGGCTCTGAAGCTGCCTGAGAC
CCGGGGACAGGTGCTGCAGTGAGGGATGGGGGAGTGTCTCAGGGGCTTTAGGGATGGCAGGCAC
ACTGTGACCAATAATTTCTTTTATCCCTACCCTGCCCTGCTGTCCTGGTCCTACTCCGTGTTTG
GTGTCTTAGCTGTGTGCCTGTGTGCATGTGTGTGACCCTGACGGGCAGGGGCTACGGGGAGGGT
CCCTTTGTCCCATGTTTGGGAGGAGGGACTCCCCACCTGCTGCCACCCTCAACTTTGCACAAGG
AGAAGGCTGAGCTGCATCCTTCTCTCCCTCAGTGTTAGCAGGGGTGGGGACGACTGTTTCTCTG
CTCCAGGTGTTCCAGAATTTCTGCCTTTCCCATCATTCCCTCCGCCTAGGCCCTGGTGAACCAC
AGGTATGGAGTTATAGTGGGGGCTGAGGCTTGGACCAAAAGAACTTCTTGAGTGGGAGCCTCCC
AAGGATGCTGGGGAGTAGCAATAAACCTTAGCCTCCGTTTTCACCTCAATTCAGGCTACAAGTG
TGAAGCCTGGATTTTATGGAATTAGTTTTCTGATTCTTATTTATATGTAAGTTCTGAGGCAGCT
TAGCTGGACTGTGTGTGGATGTATACATACACTCATATGTGTGTGTGTGTGCGCGCGTGCGTGT
GCGTGTGTGTATGTGTGCCATGGGGTAGGGGTACCACTATACTGTTCAATTATAAGCCAAGAGT
AGTAGTTTCAGTGAGCACACACACAACACTGTTTTTCTATCGTAACTCCCAGAATCTTGTACCT
GTGTTGGGGCTGCAGGCAGAAGTCCTTGGTCAGGCTGGGGTGAGCCCTGCAATCTTGGGGGACC
TGAGGGCACCTGACAAGGACTTTCTCCTTCCTCTAGAGAGGTTCTACCCACTAGCCACAGCCCT
CCCATCTGACCTGTCCACACAGGCAGTGTATCAGAGGAAAGAAAGGGAAAATAACCAGGCACAC
ATGGTCAAACCAGCAGGTCTGAAAGCACAAGAAGCTGGGGCAGGGGCAGGAAGCAGGGGTCCAT
CCCCTAACCCTTCTCAAAAAGGCTGGGTCGTGAGGGACCCCTAATGCAGGGACCTGAAGCCTCA
GTTTCCCCATCTTGCCCTTCCACAGAACAGCCTCTGTAGGTAGAGCTGCCCCCCGTCCTACCCT
ACTCTTGTGGCTGCTTTCTTTGGTACTCTTCCCACTCCCACCGTAGCTGTGACGTGTTGTAGTT
TTTAGCTGTTTGTAAAATGTTAAAAAAAAAAAAAAGTTAAAAGGAAGTTAAACTAAAAAAAAAA
AAAATCCAAATTCACCCTCCTTATGCTGTGTCTGGTGCCCTCAACCCTAAGGCCATTCCGATTT
TGTAACACTGAACCAGGTGGTGACTGTTTAATCGTGTCTGTGCTCAAAGGACTGCCTTCTCCTC
CAGTGCCCAGTGTGTGTGTGCCCCTTCCCTCATCATTCCGTTGCTGGACGTGGCCCTCTCCCTT
ACGTCCCCAGGGGAGACACAGCCACTTGTTTGTCTCCCGGGGAGCCCTGAACCTGACTCCATTG
ATGTGAAAAAATGAAATGAAAAATACTGCTGAAAAATAAAGGGTCTGAACCCTTAAAACTCAAA

hide sequence

RefSeq Acc Id:

XM_039101598 ⟹ XP_038957526

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	183,747,488 - 183,757,290 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_476558	(Get FASTA)	NCBI Sequence Viewer
	XP_006233014	(Get FASTA)	NCBI Sequence Viewer
	XP_038957526	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA42188	(Get FASTA)	NCBI Sequence Viewer
	AAH92132	(Get FASTA)	NCBI Sequence Viewer
	CAG34349	(Get FASTA)	NCBI Sequence Viewer
	EDL85646	(Get FASTA)	NCBI Sequence Viewer
	Q02563	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_476558 ⟸ NM_057210

- UniProtKB:

Q02563 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEEGFRDRAAFIRGAKDIAKEVKKHAAKKVVKGLDRVQDEYSRRSYSRFEEEEDDDDFPAPADG
YYRGEGAQDEEEGGASSDATEGHDEDDEIYEGEYQGIPRAESGGKGERMADGAPLAGVRGGLSD
GEGPPGGRGEAQRRKDREELAQQYETILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPS
AEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYG
TFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGW
SFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMRA
KGHPERVFSVTHIKTIHQEDELIEIQSDTGTWYQRWGVRALSLGGQVWGNFLSCFSPEYRRITL
MMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYAARTKVFPGERVEHVTFNFTLENQIHRGGQYF
NDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFRNCTFINTVFYNTDLFEYKFVNSRLVNSTF
LHNKEGCPLDVTGTGEGAYMVYFVSFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVLSCVSCF
FLSFGNSESAMIALLCLFGGVSIASWNALDVLTVELYPSDKRTTAFGFLNALCKLAAVLGISIF
TSFVGITKAAPILFASAALALGSSLALKLPETRGQVLQ

hide sequence

RefSeq Acc Id:	XP_006233014 ⟸ XM_006232952
- Peptide Label:	isoform X1
- UniProtKB:	Q02563 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEEGFRDRAAFIRGAKDIAKEVKKHAAKKVVKGLDRVQDEYSRRSYSRFEEEEDDDDFPAPADG YYRGEGAQDEEEGGASSDATEGHDEDDEIYEGEYQGIPRAESGGKGERMADGAPLAGVRGGLSD GEGPPGGRGEAQRRKDREELAQQYETILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPS AEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYG TFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGW SFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMRA KGHPERVFSVTHIKTIHQEDELIEIQSDTGTWYQRWGVRALSLGGQVWGNFLSCFSPEYRRITL MMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYAARTKVFPGERVEHVTFNFTLENQIHRGGQYF NDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFRNCTFINTVFYNTDLFEYKFVNSRLVNSTF LHNKEGCPLDVTGTGEGAYMVYFVSFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVLSCVSCF FLSFGNSESAMIALLCLFGGVSIASWNALDVLTVELYPSDKRTTAFGFLNALCKLAAVLGISIF TSFVGITKAAPILFASAALALGSSLALKLPETRGQVLQ hide sequence

RefSeq Acc Id:

ENSRNOP00000028760 ⟸ ENSRNOT00000028760

RefSeq Acc Id:	XP_038957526 ⟸ XM_039101598
- Peptide Label:	isoform X2

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691569

Promoter ID:

EPDNEW_R2093

Type:

initiation region

Name:

Sv2a_1

Description:

synaptic vesicle glycoprotein 2a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	198,321,138 - 198,321,198	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619715	AgrOrtholog
Ensembl Genes	ENSRNOG00000021182	Ensembl, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000028760	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000028760	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1250.20	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7314271	IMAGE-MGC_LOAD
InterPro	5peptide_repeat	UniProtKB/Swiss-Prot
	MFS	UniProtKB/Swiss-Prot
	MFS_dom	UniProtKB/Swiss-Prot
	MFS_sugar_transport-like	UniProtKB/Swiss-Prot
	MFS_trans_sf	UniProtKB/Swiss-Prot
	Sugar_transporter_CS	UniProtKB/Swiss-Prot
	SV2	UniProtKB/Swiss-Prot
KEGG Report	rno:117559	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105346	IMAGE-MGC_LOAD
NCBI Gene	117559	ENTREZGENE
Pfam	MFS_1	UniProtKB/Swiss-Prot
	Pentapeptide_4	UniProtKB/Swiss-Prot
	Sugar_tr	UniProtKB/Swiss-Prot
PhenoGen	Sv2a	PhenoGen
PROSITE	MFS	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF103473	UniProtKB/Swiss-Prot
TIGRFAMs	synapt_SV2	UniProtKB/Swiss-Prot
UniProt	Q02563	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q58DZ8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-12-14	Sv2a	synaptic vesicle glycoprotein 2a		synaptic vesicle glycoprotein 2 a	Name updated	1299863	APPROVED
2002-08-07	Sv2a	synaptic vesicle glycoprotein 2 a			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	has 12 transmembrane domains	634182
gene_expression	expressed in the endocrine cells and in the secretory vesicles in neurons	634182

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)