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Gene: S100a1 (S100 calcium binding protein A1) Rattus norvegicus
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Symbol: S100a1
Name: S100 calcium binding protein A1
Description: Exhibits calcium ion binding activity; calcium-dependent protein binding activity; and identical protein binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of voltage-gated calcium channel activity. Localizes to the M band; Z disc; and neuron projection. Orthologous to human S100A1 (S100 calcium binding protein A1); PARTICIPATES IN calcium/calcium-mediated signaling pathway; INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 17alpha-ethynylestradiol; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: protein S100-A1; S-100 protein alpha chain; S-100 protein subunit alpha; S100 calcium-binding protein A1
Orthologs:
Homo sapiens (human) : S100A1 (S100 calcium binding protein A1)  HGNC  Alliance
Mus musculus (house mouse) : S100a1 (S100 calcium binding protein A1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : S100a1 (S100 calcium binding protein A1)
Pan paniscus (bonobo/pygmy chimpanzee) : S100A1 (S100 calcium binding protein A1)
Canis lupus familiaris (dog) : S100A1 (S100 calcium binding protein A1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : S100a1 (S100 calcium binding protein A1)
Sus scrofa (pig) : S100A1 (S100 calcium binding protein A1)
Chlorocebus sabaeus (African green monkey) : S100A1 (S100 calcium binding protein A1)
Heterocephalus glaber (naked mole-rat) : S100a1 (S100 calcium binding protein A1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02189,900,505 - 189,905,348 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,900,667 - 189,903,219 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,330,969 - 209,336,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,784,818 - 182,787,370 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12182,734,773 - 182,737,446 (-)NCBI
Celera2169,929,425 - 169,934,268 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on S100a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3614
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.