Gene: Csde1 (cold shock domain containing E1) Rattus norvegicus
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Symbol: Csde1
Name: cold shock domain containing E1
Description: Predicted to have RNA binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, no-go decay. Predicted to localize to the cytoplasm and plasma membrane. Orthologous to human CSDE1 (cold shock domain containing E1); INTERACTS WITH 17alpha-ethynylestradiol; 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cold shock domain containing E1, RNA binding; cold shock domain containing E1, RNA binding-like; cold shock domain-containing protein E1; LOC100362464; Unr; upstream of NRAS
Orthologs:
Homo sapiens (human) : CSDE1 (cold shock domain containing E1)  HGNC  Alliance
Mus musculus (house mouse) : Csde1 (cold shock domain containing E1, RNA binding)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Csde1 (cold shock domain containing E1)
Pan paniscus (bonobo/pygmy chimpanzee) : CSDE1 (cold shock domain containing E1)
Canis lupus familiaris (dog) : CSDE1 (cold shock domain containing E1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Csde1 (cold shock domain containing E1)
Sus scrofa (pig) : CSDE1 (cold shock domain containing E1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02205,525,194 - 205,552,987 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02224,955,782 - 224,983,574 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.12198,226,179 - 198,255,228 (+)NCBI
Celera2183,028,421 - 183,056,128 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Csde1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 619726
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.