Pde4dip (phosphodiesterase 4D interacting protein) - Rat Genome Database

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Gene: Pde4dip (phosphodiesterase 4D interacting protein) Rattus norvegicus
Analyze
Symbol: Pde4dip
Name: phosphodiesterase 4D interacting protein
RGD ID: 708410
Description: Enables enzyme binding activity. Involved in protein-containing complex assembly. Located in centrosome and myofibril. Orthologous to human PDE4DIP (phosphodiesterase 4D interacting protein); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC64183; myomegalin; phosphodiesterase 4D interacting protein (myomegalin); phosphodiesterase 4D-interacting protein; phosphodiesterase-binding protein clone 46
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82187,982,002 - 188,178,937 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2187,981,878 - 188,178,869 (-)EnsemblGRCr8
mRatBN7.22185,293,236 - 185,490,100 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2185,293,214 - 185,468,379 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2192,940,676 - 193,137,388 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02190,749,615 - 190,945,831 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02185,573,289 - 185,769,975 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02199,867,965 - 200,066,034 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2199,867,972 - 200,003,443 (-)Ensemblrn6Rnor6.0
Rnor_5.02219,345,687 - 219,479,200 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42192,534,747 - 192,671,053 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2177,786,301 - 177,918,988 (-)NCBICelera
RGSC_v3.12192,497,500 - 192,633,807 (-)NCBI
Cytogenetic Map2q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
arachidonic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
clofibrate  (ISO)
clothianidin  (ISO)
cobalt dichloride  (EXP)
cocaine  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (EXP)
heroin  (ISO)
indometacin  (ISO)
inulin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methamphetamine  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N(4)-hydroxycytidine  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
ochratoxin A  (EXP)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (EXP)
propanal  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
triacsin C  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc protoporphyrin  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IBA,IDA,IEA,ISO)
cortical microtubule plus-end  (ISO)
cytoplasm  (IEA,ISO)
cytoskeleton  (IEA)
Golgi apparatus  (IBA,IEA,ISO)
microtubule organizing center  (IEA)
myofibril  (IDA)
nucleus  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Myomegalin is a novel protein of the golgi/centrosome that interacts with a cyclic nucleotide phosphodiesterase. Verde I, etal., J Biol Chem 2001 Apr 6;276(14):11189-98. Epub 2000 Dec 27.
Additional References at PubMed
PMID:11374908   PMID:21399614   PMID:21569246   PMID:24625528   PMID:27666745   PMID:29162697  


Genomics

Comparative Map Data
Pde4dip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82187,982,002 - 188,178,937 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2187,981,878 - 188,178,869 (-)EnsemblGRCr8
mRatBN7.22185,293,236 - 185,490,100 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2185,293,214 - 185,468,379 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2192,940,676 - 193,137,388 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02190,749,615 - 190,945,831 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02185,573,289 - 185,769,975 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02199,867,965 - 200,066,034 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2199,867,972 - 200,003,443 (-)Ensemblrn6Rnor6.0
Rnor_5.02219,345,687 - 219,479,200 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42192,534,747 - 192,671,053 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2177,786,301 - 177,918,988 (-)NCBICelera
RGSC_v3.12192,497,500 - 192,633,807 (-)NCBI
Cytogenetic Map2q34NCBI
PDE4DIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381148,808,434 - 149,033,016 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1148,808,140 - 149,048,286 (+)Ensemblhg38GRCh38
GRCh371144,851,427 - 145,075,933 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361143,562,784 - 143,787,436 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341142,440,804 - 142,565,067NCBI
Celera1121,506,245 - 121,526,690 (+)NCBICelera
Cytogenetic Map1q21.2NCBI
HuRef1119,290,177 - 119,290,733 (-)NCBIHuRef
HuRef1119,196,278 - 119,206,613 (-)NCBIHuRef
HuRef1119,235,190 - 119,235,681 (-)NCBIHuRef
HuRef1119,153,319 - 119,162,328 (-)NCBIHuRef
HuRef1119,142,103 - 119,150,668 (-)NCBIHuRef
HuRef1119,165,611 - 119,191,824 (-)ENTREZGENEHuRef
HuRef1119,268,039 - 119,268,444 (-)NCBIHuRef
CHM1_11150,176,307 - 150,401,145 (+)NCBICHM1_1
T2T-CHM13v2.01145,475,230 - 145,700,086 (+)NCBIT2T-CHM13v2.0
Pde4dip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39397,597,144 - 97,796,023 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl397,597,140 - 97,796,023 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38397,689,828 - 97,888,707 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl397,689,824 - 97,888,707 (-)Ensemblmm10GRCm38
MGSCv37397,493,751 - 97,692,630 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36397,775,233 - 97,974,112 (-)NCBIMGSCv36mm8
Celera399,089,670 - 99,287,699 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map342.28NCBI
Pde4dip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555681,322,470 - 1,546,256 (-)Ensembl
ChiLan1.0NW_0049555681,321,053 - 1,546,351 (-)NCBIChiLan1.0ChiLan1.0
LOC100977296
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21102,698,937 - 102,705,916 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,273,207 - 102,294,457 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,445,609 - 122,452,842 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,064,912 - 113,084,501 (+)NCBIPanPan1.1PanPan1.1panPan2
PDE4DIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11757,135,716 - 57,359,348 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1757,135,308 - 57,358,978 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1756,773,133 - 56,996,596 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01758,127,352 - 58,351,715 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1758,015,164 - 58,358,991 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11757,038,235 - 57,262,228 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01757,074,929 - 57,298,766 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01757,722,757 - 57,947,007 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC100624559
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4100,646,935 - 100,863,250 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.14100,646,939 - 100,863,353 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PDE4DIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603814,282,358 - 14,312,135 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Pde4dip
1588 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:78
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000024900
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2159440760195313808Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
7488929Bp366Blood pressure QTL 3660.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2187663373195783351Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat

Markers in Region
D13Rat53  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,302,209 - 185,302,393 (+)MAPPERmRatBN7.2
Rnor_6.02199,876,939 - 199,877,122NCBIRnor6.0
Rnor_5.02219,353,683 - 219,353,866UniSTSRnor5.0
RGSC_v3.42192,542,742 - 192,542,925RGDRGSC3.4
RGSC_v3.42192,542,743 - 192,542,926UniSTSRGSC3.4
Celera2177,794,297 - 177,794,480UniSTS
RGSC_v3.12192,505,496 - 192,505,679RGD
RH 3.4 Map21255.3UniSTS
RH 3.4 Map21255.3RGD
RH 2.0 Map2947.4RGD
SHRSP x BN Map132.2799RGD
FHH x ACI Map134.92RGD
Cytogenetic Map2q34UniSTS
BE112181  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,332,836 - 185,333,008 (+)MAPPERmRatBN7.2
Rnor_6.02199,907,821 - 199,907,992NCBIRnor6.0
Rnor_5.02219,384,031 - 219,384,202UniSTSRnor5.0
RGSC_v3.42192,573,845 - 192,574,016UniSTSRGSC3.4
Celera2177,824,215 - 177,824,386UniSTS
RH 3.4 Map21255.3UniSTS
Cytogenetic Map2q34UniSTS
RH138621  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,343,133 - 185,343,287 (+)MAPPERmRatBN7.2
Rnor_6.02199,918,118 - 199,918,271NCBIRnor6.0
Rnor_5.02219,394,328 - 219,394,481UniSTSRnor5.0
RGSC_v3.42192,584,142 - 192,584,295UniSTSRGSC3.4
Celera2177,834,511 - 177,834,664UniSTS
RH 3.4 Map21255.3UniSTS
Cytogenetic Map2q34UniSTS
RH127540  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,293,277 - 185,293,470 (+)MAPPERmRatBN7.2
Rnor_6.02199,868,007 - 199,868,199NCBIRnor6.0
Rnor_5.02219,344,751 - 219,344,943UniSTSRnor5.0
RGSC_v3.42192,533,811 - 192,534,003UniSTSRGSC3.4
Celera2177,785,365 - 177,785,557UniSTS
RH 3.4 Map21255.4UniSTS
Cytogenetic Map2q34UniSTS
RH129474  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,341,949 - 185,342,129 (+)MAPPERmRatBN7.2
Rnor_6.02199,916,934 - 199,917,113NCBIRnor6.0
Rnor_5.02219,393,144 - 219,393,323UniSTSRnor5.0
RGSC_v3.42192,582,958 - 192,583,137UniSTSRGSC3.4
Celera2177,833,328 - 177,833,507UniSTS
RH 3.4 Map21255.3UniSTS
Cytogenetic Map2q34UniSTS
RH135416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,349,723 - 185,350,818 (+)MAPPERmRatBN7.2
Rnor_6.02199,924,708 - 199,925,802NCBIRnor6.0
Rnor_5.02219,400,918 - 219,402,012UniSTSRnor5.0
RGSC_v3.42192,590,732 - 192,591,826UniSTSRGSC3.4
Celera2177,841,101 - 177,842,195UniSTS
RH 3.4 Map21255.3UniSTS
Cytogenetic Map2q34UniSTS
RH141783  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,368,647 - 185,368,852 (+)MAPPERmRatBN7.2
Rnor_6.02199,943,555 - 199,943,759NCBIRnor6.0
Rnor_5.02219,419,765 - 219,419,969UniSTSRnor5.0
RGSC_v3.42192,611,268 - 192,611,472UniSTSRGSC3.4
Celera2177,859,877 - 177,860,081UniSTS
RH 3.4 Map21254.2UniSTS
Cytogenetic Map2q34UniSTS
BF420231  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,317,848 - 185,317,945 (+)MAPPERmRatBN7.2
Rnor_6.02199,892,578 - 199,892,674NCBIRnor6.0
Rnor_5.02219,369,322 - 219,369,418UniSTSRnor5.0
RGSC_v3.42192,558,382 - 192,558,478UniSTSRGSC3.4
Celera2177,809,942 - 177,810,038UniSTS
RH 3.4 Map21254.0UniSTS
Cytogenetic Map2q34UniSTS
MARC_23709-23710:1030738086:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22185,354,838 - 185,356,037 (+)MAPPERmRatBN7.2
Rnor_6.02199,929,821 - 199,931,019NCBIRnor6.0
Rnor_5.02219,406,031 - 219,407,229UniSTSRnor5.0
RGSC_v3.42192,595,845 - 192,597,043UniSTSRGSC3.4
Celera2177,846,216 - 177,847,414UniSTS
Cytogenetic Map2q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001389233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001836491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF139185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000024900   ⟹   ENSRNOP00000024900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,984,487 - 188,116,829 (-)Ensembl
mRatBN7.2 Ensembl2185,295,721 - 185,428,064 (-)Ensembl
Rnor_6.0 Ensembl2199,868,943 - 200,003,443 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087026   ⟹   ENSRNOP00000072921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,982,879 - 188,085,669 (-)Ensembl
mRatBN7.2 Ensembl2185,294,113 - 185,396,912 (-)Ensembl
Rnor_6.0 Ensembl2199,867,972 - 199,971,965 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088041   ⟹   ENSRNOP00000069762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,981,878 - 188,157,010 (-)Ensembl
mRatBN7.2 Ensembl2185,293,237 - 185,468,379 (-)Ensembl
Rnor_6.0 Ensembl2199,868,943 - 200,003,443 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100009   ⟹   ENSRNOP00000078787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,982,002 - 188,178,869 (-)Ensembl
mRatBN7.2 Ensembl2185,293,214 - 185,370,905 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118806   ⟹   ENSRNOP00000095141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,982,002 - 188,059,733 (-)Ensembl
mRatBN7.2 Ensembl2185,293,214 - 185,370,905 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147765   ⟹   ENSRNOP00000103442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,982,002 - 188,178,869 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000152091   ⟹   ENSRNOP00000102317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,983,727 - 188,157,010 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167057   ⟹   ENSRNOP00000100013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,982,002 - 188,178,869 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167159   ⟹   ENSRNOP00000099519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,982,002 - 188,178,869 (-)Ensembl
RefSeq Acc Id: NM_001389233   ⟹   NP_001376162
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,002 - 188,178,485 (-)NCBI
mRatBN7.22185,293,236 - 185,489,729 (-)NCBI
RefSeq Acc Id: NM_001389234   ⟹   NP_001376163
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,002 - 188,178,485 (-)NCBI
mRatBN7.22185,293,236 - 185,489,729 (-)NCBI
RefSeq Acc Id: NM_001389235   ⟹   NP_001376164
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,009 - 188,178,485 (-)NCBI
mRatBN7.22185,293,243 - 185,489,729 (-)NCBI
RefSeq Acc Id: NM_022382   ⟹   NP_071777
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,002 - 188,116,829 (-)NCBI
mRatBN7.22185,293,236 - 185,428,072 (-)NCBI
Rnor_6.02199,868,943 - 200,003,443 (-)NCBI
Rnor_5.02219,345,687 - 219,479,200 (-)NCBI
RGSC_v3.42192,534,747 - 192,671,053 (-)RGD
Celera2177,786,301 - 177,918,988 (-)RGD
Sequence:
RefSeq Acc Id: XM_017591071   ⟹   XP_017446560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,082 (-)NCBI
Rnor_6.02199,867,965 - 200,066,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591072   ⟹   XP_017446561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,083 (-)NCBI
Rnor_6.02199,867,965 - 200,066,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591073   ⟹   XP_017446562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,064,609 (-)NCBI
mRatBN7.22185,293,236 - 185,371,182 (-)NCBI
Rnor_6.02199,867,965 - 199,946,053 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591074   ⟹   XP_017446563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,083 (-)NCBI
Rnor_6.02199,867,965 - 200,066,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591075   ⟹   XP_017446564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,083 (-)NCBI
Rnor_6.02199,867,965 - 200,066,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591078   ⟹   XP_017446567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,084 (-)NCBI
Rnor_6.02199,867,965 - 200,066,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591079   ⟹   XP_017446568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,083 (-)NCBI
Rnor_6.02199,867,965 - 200,066,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591080   ⟹   XP_017446569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,085 (-)NCBI
Rnor_6.02199,867,965 - 200,066,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591081   ⟹   XP_017446570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,157,194 (-)NCBI
mRatBN7.22185,293,236 - 185,468,666 (-)NCBI
Rnor_6.02199,867,965 - 200,044,185 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103040   ⟹   XP_038958968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,084 (-)NCBI
RefSeq Acc Id: XM_039103041   ⟹   XP_038958969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,064,609 (-)NCBI
mRatBN7.22185,294,214 - 185,370,777 (-)NCBI
RefSeq Acc Id: XM_039103042   ⟹   XP_038958970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,085 (-)NCBI
RefSeq Acc Id: XM_039103043   ⟹   XP_038958971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,115,065 (-)NCBI
mRatBN7.22185,293,236 - 185,426,308 (-)NCBI
RefSeq Acc Id: XM_039103044   ⟹   XP_038958972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,157,154 (-)NCBI
mRatBN7.22185,293,236 - 185,468,389 (-)NCBI
RefSeq Acc Id: XM_039103045   ⟹   XP_038958973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,116,831 (-)NCBI
mRatBN7.22185,293,236 - 185,428,073 (-)NCBI
RefSeq Acc Id: XM_039103046   ⟹   XP_038958974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82188,021,280 - 188,178,937 (-)NCBI
mRatBN7.22185,332,515 - 185,490,100 (-)NCBI
RefSeq Acc Id: XM_039103047   ⟹   XP_038958975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82188,021,280 - 188,064,646 (-)NCBI
mRatBN7.22185,344,326 - 185,370,777 (-)NCBI
RefSeq Acc Id: XM_063282451   ⟹   XP_063138521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
RefSeq Acc Id: XM_063282452   ⟹   XP_063138522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
RefSeq Acc Id: XM_063282453   ⟹   XP_063138523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
RefSeq Acc Id: XM_063282454   ⟹   XP_063138524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
RefSeq Acc Id: XM_063282456   ⟹   XP_063138526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,064,609 (-)NCBI
RefSeq Acc Id: XM_063282457   ⟹   XP_063138527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
RefSeq Acc Id: XM_063282458   ⟹   XP_063138528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
RefSeq Acc Id: XM_063282459   ⟹   XP_063138529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,064,609 (-)NCBI
RefSeq Acc Id: XM_063282460   ⟹   XP_063138530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,178,937 (-)NCBI
RefSeq Acc Id: XM_063282462   ⟹   XP_063138532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,157,194 (-)NCBI
RefSeq Acc Id: XM_063282463   ⟹   XP_063138533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,116,901 (-)NCBI
RefSeq Acc Id: XM_063282464   ⟹   XP_063138534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82188,021,280 - 188,064,657 (-)NCBI
RefSeq Acc Id: XM_063282465   ⟹   XP_063138535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82188,021,280 - 188,178,937 (-)NCBI
RefSeq Acc Id: XM_063282466   ⟹   XP_063138536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82188,021,280 - 188,157,194 (-)NCBI
RefSeq Acc Id: XM_063282467   ⟹   XP_063138537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82188,021,280 - 188,157,194 (-)NCBI
RefSeq Acc Id: XM_063282469   ⟹   XP_063138539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82188,021,280 - 188,116,832 (-)NCBI
RefSeq Acc Id: XM_063282470   ⟹   XP_063138540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,064,609 (-)NCBI
RefSeq Acc Id: XM_063282471   ⟹   XP_063138541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,005 - 188,064,609 (-)NCBI
RefSeq Acc Id: XR_001836491
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,982,934 - 188,178,937 (-)NCBI
mRatBN7.22185,293,236 - 185,490,083 (-)NCBI
Rnor_6.02199,867,965 - 200,066,034 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001376162 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376163 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376164 (Get FASTA)   NCBI Sequence Viewer  
  NP_071777 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446560 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446561 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446562 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446563 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446564 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446567 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446568 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446569 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446570 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958968 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958970 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958972 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958973 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958974 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958975 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138521 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138522 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138523 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138524 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138526 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138527 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138528 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138529 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138530 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138532 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138533 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138534 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138535 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138536 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138537 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138539 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138540 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138541 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD29427 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024900
  ENSRNOP00000069762
  ENSRNOP00000078787
  ENSRNOP00000095141
  ENSRNOP00000099519
  ENSRNOP00000100013
  ENSRNOP00000103442
GenBank Protein Q9WUJ3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_071777   ⟸   NM_022382
- Peptide Label: isoform 1
- UniProtKB: A6K3C2 (UniProtKB/TrEMBL),   F1M7R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446568   ⟸   XM_017591079
- Peptide Label: isoform X14
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446564   ⟸   XM_017591075
- Peptide Label: isoform X6
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446567   ⟸   XM_017591078
- Peptide Label: isoform X11
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446561   ⟸   XM_017591072
- Peptide Label: isoform X2
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446560   ⟸   XM_017591071
- Peptide Label: isoform X1
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446569   ⟸   XM_017591080
- Peptide Label: isoform X15
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446563   ⟸   XM_017591074
- Peptide Label: isoform X5
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446570   ⟸   XM_017591081
- Peptide Label: isoform X16
- UniProtKB: A0A0G2JW66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446562   ⟸   XM_017591073
- Peptide Label: isoform X4
- UniProtKB: A6K3C4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072921   ⟸   ENSRNOT00000087026
Ensembl Acc Id: ENSRNOP00000024900   ⟸   ENSRNOT00000024900
Ensembl Acc Id: ENSRNOP00000069762   ⟸   ENSRNOT00000088041
RefSeq Acc Id: XP_038958970   ⟸   XM_039103042
- Peptide Label: isoform X13
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958968   ⟸   XM_039103040
- Peptide Label: isoform X10
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376162   ⟸   NM_001389233
- Peptide Label: isoform 2
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376163   ⟸   NM_001389234
- Peptide Label: isoform 3
- UniProtKB: A6K3C1 (UniProtKB/TrEMBL),   A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958972   ⟸   XM_039103044
- Peptide Label: isoform X24
- UniProtKB: F1M7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958973   ⟸   XM_039103045
- Peptide Label: isoform X24
- UniProtKB: F1M7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958971   ⟸   XM_039103043
- Peptide Label: isoform X22
- UniProtKB: F1M7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001376164   ⟸   NM_001389235
- Peptide Label: isoform 4
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958969   ⟸   XM_039103041
- Peptide Label: isoform X12
- UniProtKB: A6K3C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958974   ⟸   XM_039103046
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038958975   ⟸   XM_039103047
- Peptide Label: isoform X29
Ensembl Acc Id: ENSRNOP00000078787   ⟸   ENSRNOT00000100009
Ensembl Acc Id: ENSRNOP00000095141   ⟸   ENSRNOT00000118806
RefSeq Acc Id: XP_063138530   ⟸   XM_063282460
- Peptide Label: isoform X21
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138528   ⟸   XM_063282458
- Peptide Label: isoform X19
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138523   ⟸   XM_063282453
- Peptide Label: isoform X8
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138524   ⟸   XM_063282454
- Peptide Label: isoform X9
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138527   ⟸   XM_063282457
- Peptide Label: isoform X18
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138522   ⟸   XM_063282452
- Peptide Label: isoform X7
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138521   ⟸   XM_063282451
- Peptide Label: isoform X3
- UniProtKB: A6K3C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138532   ⟸   XM_063282462
- Peptide Label: isoform X23
- UniProtKB: A0A0G2JW66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138533   ⟸   XM_063282463
- Peptide Label: isoform X25
- UniProtKB: F1M7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138541   ⟸   XM_063282471
- Peptide Label: isoform X34
- UniProtKB: A0A8I6G2C1 (UniProtKB/TrEMBL),   A6K3C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138529   ⟸   XM_063282459
- Peptide Label: isoform X20
- UniProtKB: A0A8I6APT7 (UniProtKB/TrEMBL),   A6K3C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138526   ⟸   XM_063282456
- Peptide Label: isoform X17
- UniProtKB: A6K3C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138540   ⟸   XM_063282470
- Peptide Label: isoform X33
- UniProtKB: A6K3C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138535   ⟸   XM_063282465
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063138537   ⟸   XM_063282467
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063138536   ⟸   XM_063282466
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063138539   ⟸   XM_063282469
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063138534   ⟸   XM_063282464
- Peptide Label: isoform X27
Ensembl Acc Id: ENSRNOP00000103442   ⟸   ENSRNOT00000147765
Ensembl Acc Id: ENSRNOP00000100013   ⟸   ENSRNOT00000167057
Ensembl Acc Id: ENSRNOP00000102317   ⟸   ENSRNOT00000152091
Ensembl Acc Id: ENSRNOP00000099519   ⟸   ENSRNOT00000167159
Protein Domains
Olduvai

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUJ3-F1-model_v2 AlphaFold Q9WUJ3 1-2324 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708410 AgrOrtholog
BioCyc Gene G2FUF-51927 BioCyc
Ensembl Genes ENSRNOG00000018220 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000024900 ENTREZGENE
  ENSRNOT00000088041 ENTREZGENE
  ENSRNOT00000100009 ENTREZGENE
  ENSRNOT00000118806 ENTREZGENE
  ENSRNOT00000147765 ENTREZGENE
  ENSRNOT00000167057 ENTREZGENE
  ENSRNOT00000167159 ENTREZGENE
InterPro CC_CDK5RAP2_MYOME UniProtKB/Swiss-Prot
  Cnn_1N UniProtKB/Swiss-Prot
  MT-associated_AKAP9-binding UniProtKB/Swiss-Prot
  Olduvai_dom UniProtKB/Swiss-Prot
KEGG Report rno:64183 UniProtKB/Swiss-Prot
NCBI Gene 64183 ENTREZGENE
PANTHER MYOMEGALIN UniProtKB/Swiss-Prot
  MYOMEGALIN UniProtKB/Swiss-Prot
Pfam CC_CDK5RAP2 UniProtKB/Swiss-Prot
  Cnn_1N UniProtKB/Swiss-Prot
PhenoGen Pde4dip PhenoGen
PROSITE NBPF UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018220 RatGTEx
SMART DUF1220 UniProtKB/Swiss-Prot
UniProt A0A0G2JW66 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K463_RAT UniProtKB/TrEMBL
  A0A8I6APT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G2C1 ENTREZGENE, UniProtKB/TrEMBL
  A6K3C0 ENTREZGENE, UniProtKB/TrEMBL
  A6K3C1 ENTREZGENE, UniProtKB/TrEMBL
  A6K3C2 ENTREZGENE, UniProtKB/TrEMBL
  A6K3C4 ENTREZGENE, UniProtKB/TrEMBL
  F1M7R5 ENTREZGENE, UniProtKB/TrEMBL
  MYOME_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-08-29 Pde4dip  phosphodiesterase 4D interacting protein  Pde4dip  phosphodiesterase 4D interacting protein (myomegalin)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Pde4dip  phosphodiesterase 4D interacting protein (myomegalin)  LOC64183  myomegalin  Symbol and Name updated 1299863 APPROVED