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Gene: Lix1l (limb and CNS expressed 1 like) Rattus norvegicus

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Symbol:

Lix1l

Name:

limb and CNS expressed 1 like

RGD ID:

1593161

Description:

Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Orthologous to human LIX1L (limb and CNS expressed 1 like); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Lix1 homolog (mouse)-like; Lix1 homolog-like; Lix1-like; LIX1-like protein; LOC499677; similar to Lix1 homolog (mouse) like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIX1L (limb and CNS expressed 1 like)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB
Mus musculus (house mouse):	Lix1l (Lix1-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lix1l (limb and CNS expressed 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIX1L (limb and CNS expressed 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LIX1L (limb and CNS expressed 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lix1l (limb and CNS expressed 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LIX1L (limb and CNS expressed 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIX1L (limb and CNS expressed 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lix1l (limb and CNS expressed 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	LIX1L (limb and CNS expressed 1 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lix1l (Lix1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lix1l (limb and CNS expressed 1 like)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	lft	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lix1l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	186,824,864 - 186,850,761 (+)	NCBI		GRCr8
mRatBN7.2	2	184,136,018 - 184,161,918 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	184,136,038 - 184,161,916 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	191,807,667 - 191,833,479 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	189,600,437 - 189,626,294 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	184,440,224 - 184,466,036 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	198,726,110 - 198,751,987 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	198,726,118 - 198,751,985 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	218,213,040 - 218,238,921 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	191,399,902 - 191,426,502 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	176,661,259 - 176,686,996 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lix1l	Rat	cataract 46 juvenile-onset		ISO	LIX1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cataract 46 juvenile-onset	ClinVar	PMID:29464339 and PMID:31690835
Lix1l	Rat	gastrointestinal stromal tumor		ISO	LIX1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Lix1l	Rat	parathyroid carcinoma		ISO	LIX1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
Lix1l	Rat	schizophrenia		ISO	LIX1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311
Lix1l	Rat	thrombocytopenia-absent radius syndrome		ISO	LIX1L (Homo sapiens)	8554872	ClinVar Annotator: match by term: Radial aplasia-thrombocytopenia syndrome	ClinVar	PMID:17236129 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lix1l	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of LIX1L mRNA]	CTD	PMID:31150632
Lix1l	Rat	1,2-dimethylhydrazine	increases expression	ISO	Lix1l (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of LIX1L mRNA	CTD	PMID:22206623
Lix1l	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of LIX1L mRNA	CTD	PMID:33387578 and PMID:34747641
Lix1l	Rat	2-methylcholine	affects expression	ISO	LIX1L (Homo sapiens)	6480464	beta-methylcholine affects the expression of LIX1L mRNA	CTD	PMID:21179406
Lix1l	Rat	5-aza-2'-deoxycytidine	affects expression	ISO	LIX1L (Homo sapiens)	6480464	Decitabine affects the expression of LIX1L mRNA	CTD	PMID:23300844
Lix1l	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of LIX1L mRNA	CTD	PMID:24780913 and PMID:30047161
Lix1l	Rat	acrylamide	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Acrylamide results in decreased expression of LIX1L mRNA	CTD	PMID:32763439
Lix1l	Rat	aflatoxin B1	decreases methylation	ISO	LIX1L (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of LIX1L exon and Aflatoxin B1 results in decreased methylation of LIX1L gene	CTD	PMID:27153756 and PMID:30157460
Lix1l	Rat	all-trans-retinoic acid	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Tretinoin results in decreased expression of LIX1L mRNA	CTD	PMID:33167477
Lix1l	Rat	amitrole	increases expression	EXP		6480464	Amitrole results in increased expression of LIX1L mRNA	CTD	PMID:30047161
Lix1l	Rat	antirheumatic drug	increases expression	ISO	LIX1L (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of LIX1L mRNA	CTD	PMID:24449571
Lix1l	Rat	arsenous acid	increases expression	ISO	LIX1L (Homo sapiens)	6480464	Arsenic Trioxide results in increased expression of LIX1L mRNA	CTD	PMID:22521957
Lix1l	Rat	avobenzone	increases expression	ISO	LIX1L (Homo sapiens)	6480464	avobenzone results in increased expression of LIX1L mRNA	CTD	PMID:31016361
Lix1l	Rat	benzo[a]pyrene	decreases expression	ISO	Lix1l (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of LIX1L mRNA	CTD	PMID:19770486
Lix1l	Rat	benzo[a]pyrene	affects methylation	ISO	LIX1L (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of LIX1L promoter	CTD	PMID:27901495
Lix1l	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Diethylhexyl Phthalate results in decreased expression of LIX1L mRNA	CTD	PMID:31163220
Lix1l	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of LIX1L mRNA	CTD	PMID:25181051
Lix1l	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of LIX1L mRNA	CTD	PMID:34947998
Lix1l	Rat	bisphenol F	increases expression	ISO	Lix1l (Mus musculus)	6480464	bisphenol F results in increased expression of LIX1L mRNA	CTD	PMID:38685157
Lix1l	Rat	butan-1-ol	multiple interactions	ISO	LIX1L (Homo sapiens)	6480464	[[Gasoline co-treated with 1-Butanol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in decreased expression of LIX1L mRNA	CTD	PMID:29432896
Lix1l	Rat	butanal	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	butyraldehyde results in decreased expression of LIX1L mRNA	CTD	PMID:26079696
Lix1l	Rat	C60 fullerene	increases expression	EXP		6480464	fullerene C60 results in increased expression of LIX1L mRNA	CTD	PMID:19167457
Lix1l	Rat	cadmium dichloride	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of LIX1L mRNA	CTD	PMID:38568856
Lix1l	Rat	cantharidin	decreases expression	ISO	Lix1l (Mus musculus)	6480464	Cantharidin results in decreased expression of LIX1L mRNA	CTD	PMID:36907384
Lix1l	Rat	carbon nanotube	increases expression	ISO	Lix1l (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Lix1l	Rat	CGP 52608	multiple interactions	ISO	LIX1L (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to LIX1L gene]	CTD	PMID:28238834
Lix1l	Rat	chlordecone	increases expression	ISO	Lix1l (Mus musculus)	6480464	Chlordecone results in increased expression of LIX1L mRNA	CTD	PMID:33711761
Lix1l	Rat	chlorpyrifos	increases expression	ISO	Lix1l (Mus musculus)	6480464	Chlorpyrifos results in increased expression of LIX1L mRNA	CTD	PMID:37019170
Lix1l	Rat	cisplatin	affects expression	ISO	LIX1L (Homo sapiens)	6480464	Cisplatin affects the expression of LIX1L mRNA	CTD	PMID:23300844
Lix1l	Rat	cobalt dichloride	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	cobaltous chloride results in decreased expression of LIX1L mRNA	CTD	PMID:19320972
Lix1l	Rat	copper(II) sulfate	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of LIX1L mRNA	CTD	PMID:19549813
Lix1l	Rat	Cuprizon	affects expression	EXP		6480464	Cuprizone affects the expression of LIX1L mRNA	CTD	PMID:27523638
Lix1l	Rat	diarsenic trioxide	increases expression	ISO	LIX1L (Homo sapiens)	6480464	Arsenic Trioxide results in increased expression of LIX1L mRNA	CTD	PMID:22521957
Lix1l	Rat	Dibutyl phosphate	affects expression	ISO	LIX1L (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of LIX1L mRNA	CTD	PMID:37042841
Lix1l	Rat	diuron	increases expression	EXP		6480464	Diuron results in increased expression of LIX1L mRNA	CTD	PMID:21551480
Lix1l	Rat	doxorubicin	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Doxorubicin results in decreased expression of LIX1L mRNA	CTD	PMID:29803840
Lix1l	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of LIX1L mRNA	CTD	PMID:29391264
Lix1l	Rat	flutamide	decreases expression	EXP		6480464	Flutamide results in decreased expression of LIX1L mRNA	CTD	PMID:24136188
Lix1l	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of LIX1L mRNA	CTD	PMID:33387578
Lix1l	Rat	isobutanol	multiple interactions	ISO	LIX1L (Homo sapiens)	6480464	[[Gasoline co-treated with isobutyl alcohol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in decreased expression of LIX1L mRNA	CTD	PMID:29432896
Lix1l	Rat	ketamine	decreases expression	EXP		6480464	Ketamine results in decreased expression of LIX1L mRNA	CTD	PMID:20080153
Lix1l	Rat	leflunomide	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	leflunomide results in decreased expression of LIX1L mRNA	CTD	PMID:28988120
Lix1l	Rat	methimazole	increases expression	EXP		6480464	Methimazole results in increased expression of LIX1L mRNA	CTD	PMID:30047161
Lix1l	Rat	methyl methanesulfonate	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of LIX1L mRNA	CTD	PMID:23649840
Lix1l	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of LIX1L mRNA	CTD	PMID:25729387
Lix1l	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of LIX1L mRNA	CTD	PMID:33387578
Lix1l	Rat	perfluorohexanesulfonic acid	increases expression	ISO	Lix1l (Mus musculus)	6480464	perfluorohexanesulfonic acid results in increased expression of LIX1L mRNA	CTD	PMID:37995155
Lix1l	Rat	silver atom	decreases expression	ISO	Lix1l (Mus musculus)	6480464	Silver results in decreased expression of LIX1L mRNA	CTD	PMID:27131904
Lix1l	Rat	silver(0)	decreases expression	ISO	Lix1l (Mus musculus)	6480464	Silver results in decreased expression of LIX1L mRNA	CTD	PMID:27131904
Lix1l	Rat	sodium arsenite	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	sodium arsenite results in decreased expression of LIX1L mRNA	CTD	PMID:38568856
Lix1l	Rat	sulfadimethoxine	increases expression	EXP		6480464	Sulfadimethoxine results in increased expression of LIX1L mRNA	CTD	PMID:30047161
Lix1l	Rat	temozolomide	increases expression	ISO	LIX1L (Homo sapiens)	6480464	Temozolomide results in increased expression of LIX1L mRNA	CTD	PMID:31758290
Lix1l	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of LIX1L mRNA]	CTD	PMID:31150632
Lix1l	Rat	tetrachloromethane	decreases expression	EXP		6480464	Carbon Tetrachloride results in decreased expression of LIX1L mRNA	CTD	PMID:31150632
Lix1l	Rat	thimerosal	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Thimerosal results in decreased expression of LIX1L mRNA	CTD	PMID:27188386
Lix1l	Rat	thiram	decreases expression	ISO	LIX1L (Homo sapiens)	6480464	Thiram results in decreased expression of LIX1L mRNA	CTD	PMID:38568856
Lix1l	Rat	titanium dioxide	decreases methylation	ISO	Lix1l (Mus musculus)	6480464	titanium dioxide results in decreased methylation of LIX1L gene	CTD	PMID:35295148
Lix1l	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of LIX1L mRNA	CTD	PMID:25729387
Lix1l	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of LIX1L mRNA	CTD	PMID:33387578
Lix1l	Rat	troglitazone	decreases expression	ISO	Lix1l (Mus musculus)	6480464	troglitazone results in decreased expression of LIX1L mRNA	CTD	PMID:28973697
Lix1l	Rat	valproic acid	increases expression	ISO	LIX1L (Homo sapiens)	6480464	Valproic Acid results in increased expression of LIX1L mRNA	CTD	PMID:23179753 and PMID:24935251

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lix1l	Rat	actin cytoskeleton organization	acts_upstream_of_or_within	ISO	Lix1l (Mus musculus)	1624291	PMID:35200715	RGD	PMID:35200715
Lix1l	Rat	autophagosome maturation	involved_in	IBA	MGI:1918673 and PANTHER:PTN001579556	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lix1l	Rat	gene expression	acts_upstream_of_or_within	ISO	Lix1l (Mus musculus)	1624291	PMID:35200715	RGD	PMID:35200715
Lix1l	Rat	mitral valve development	acts_upstream_of_or_within	ISO	Lix1l (Mus musculus)	1624291	MGI:2685011 PMID:35200715	RGD	PMID:35200715

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lix1l	Rat	cytoplasm	is_active_in	IBA	FB:FBgn0032230 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:15489334

Lix1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	186,824,864 - 186,850,761 (+)	NCBI		GRCr8
mRatBN7.2	2	184,136,018 - 184,161,918 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	184,136,038 - 184,161,916 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	191,807,667 - 191,833,479 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	189,600,437 - 189,626,294 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	184,440,224 - 184,466,036 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	198,726,110 - 198,751,987 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	198,726,118 - 198,751,985 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	218,213,040 - 218,238,921 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	191,399,902 - 191,426,502 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	176,661,259 - 176,686,996 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

LIX1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	145,933,423 - 145,958,017 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	145,933,423 - 145,958,017 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	145,477,069 - 145,501,670 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	144,188,442 - 144,210,448 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	142,966,128 - 142,988,134	NCBI
Celera	1	119,680,440 - 119,702,442 (+)	NCBI		Celera
Cytogenetic Map	1	q21.1	NCBI
HuRef	1	119,440,829 - 119,465,359 (+)	NCBI		HuRef
CHM1_1	1	147,301,550 - 147,326,145 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	145,050,242 - 145,074,834 (-)	NCBI		T2T-CHM13v2.0

Lix1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	96,508,449 - 96,532,668 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	96,508,465 - 96,533,487 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	96,601,133 - 96,625,352 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	96,601,149 - 96,626,171 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	96,405,056 - 96,429,275 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	3	98,008,158 - 98,032,395 (+)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	41.93	NCBI

Lix1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955568	136,589 - 157,991 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955568	136,482 - 158,531 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIX1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	103,327,706 - 103,353,668 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	102,916,090 - 102,942,049 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	121,799,811 - 121,824,492 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	113,848,119 - 113,869,992 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	113,848,433 - 113,869,882 (-)	Ensembl	panpan1.1		panPan2

LIX1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	58,729,143 - 58,747,869 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	58,731,685 - 58,747,856 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	58,193,942 - 58,215,914 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	59,722,760 - 59,744,621 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	59,728,555 - 59,744,788 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	58,595,499 - 58,617,460 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	58,656,636 - 58,678,585 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	59,383,058 - 59,405,026 (-)	NCBI		UU_Cfam_GSD_1.0

Lix1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	20,797,215 - 20,815,888 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936867	675,337 - 692,515 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936867	673,332 - 692,005 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIX1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	99,384,394 - 99,404,891 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	99,384,293 - 99,403,554 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	109,027,103 - 109,044,311 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIX1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	12,790,629 - 12,812,248 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	12,790,756 - 12,811,931 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	15,469,523 - 15,492,345 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lix1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	17,293,732 - 17,313,184 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	17,292,118 - 17,313,010 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Lix1l
145 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	770
Count of miRNA genes:	297
Interacting mature miRNAs:	391
Transcripts:	ENSRNOT00000056237
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
4889834	Pur24	Proteinuria QTL 24	5.8	0.014	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	184114274	202447032	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

RH142678

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	184,159,902 - 184,160,004 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,749,973 - 198,750,074	NCBI	Rnor6.0
Rnor_5.0	2	218,236,907 - 218,237,008	UniSTS	Rnor5.0
RGSC_v3.4	2	191,424,488 - 191,424,589	UniSTS	RGSC3.4
Celera	2	176,684,982 - 176,685,083	UniSTS
RH 3.4 Map	2	1234.9	UniSTS
Cytogenetic Map	2	q34	UniSTS

AA924036

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	184,161,590 - 184,161,804 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,751,660 - 198,751,873	NCBI	Rnor6.0
Rnor_5.0	2	218,238,594 - 218,238,807	UniSTS	Rnor5.0
RGSC_v3.4	2	191,426,175 - 191,426,388	UniSTS	RGSC3.4
Celera	2	176,686,669 - 176,686,882	UniSTS
RH 3.4 Map	2	1237.2	UniSTS
Cytogenetic Map	2	q34	UniSTS

RH135401

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	184,134,855 - 184,135,037 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	198,724,936 - 198,725,117	NCBI	Rnor6.0
Rnor_5.0	2	218,211,870 - 218,212,051	UniSTS	Rnor5.0
RGSC_v3.4	2	191,398,720 - 191,398,901	UniSTS	RGSC3.4
Celera	2	176,660,077 - 176,660,258	UniSTS
RH 3.4 Map	2	1240.9	UniSTS
Cytogenetic Map	2	q34	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001395134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056237 ⟹ ENSRNOP00000053080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	184,136,038 - 184,161,916 (+)	Ensembl
Rnor_6.0 Ensembl	2	198,726,118 - 198,751,985 (+)	Ensembl

RefSeq Acc Id:

NM_001395134 ⟹ NP_001382063

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,824,884 - 186,850,761 (+)	NCBI
mRatBN7.2	2	184,136,038 - 184,161,918 (+)	NCBI

RefSeq Acc Id:

XM_039102934 ⟹ XP_038958862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	186,824,864 - 186,850,761 (+)	NCBI
mRatBN7.2	2	184,136,018 - 184,161,914 (+)	NCBI


Protein RefSeqs	NP_001382063	(Get FASTA)	NCBI Sequence Viewer
	XP_038958862	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87077	(Get FASTA)	NCBI Sequence Viewer
	EDL85622	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053080
	ENSRNOP00000053080.3
GenBank Protein	Q5PQQ7	(Get FASTA)	NCBI Sequence Viewer

Ensembl Acc Id:

ENSRNOP00000053080 ⟸ ENSRNOT00000056237

RefSeq Acc Id:	XP_038958862 ⟸ XM_039102934
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQQ7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001382063 ⟸ NM_001395134
- UniProtKB:	Q5PQQ7 (UniProtKB/Swiss-Prot), A6K378 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQQ7-F1-model_v2	AlphaFold	Q5PQQ7	1-338	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13691584

Promoter ID:

EPDNEW_R2109

Type:

initiation region

Name:

Lix1l_1

Description:

limb and CNS expressed 1 like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	198,726,104 - 198,726,164	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-51974	BioCyc
Ensembl Genes	ENSRNOG00000021213	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000056237	ENTREZGENE
	ENSRNOT00000056237.4	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7135157	IMAGE-MGC_LOAD
InterPro	Autophagy-related_EPG5	UniProtKB/Swiss-Prot
	LIX1	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94485	IMAGE-MGC_LOAD
NCBI Gene	499677	ENTREZGENE
PANTHER	ECTOPIC P GRANULES PROTEIN 5 HOMOLOG	UniProtKB/Swiss-Prot
	PROTEIN LIMB EXPRESSION 1 HOMOLOG	UniProtKB/Swiss-Prot
Pfam	LIX1	UniProtKB/Swiss-Prot
PhenoGen	Lix1l	PhenoGen
RatGTEx	ENSRNOG00000021213	RatGTEx
Superfamily-SCOP	dsRNA-binding domain-like	UniProtKB/Swiss-Prot
UniProt	A6K378	ENTREZGENE, UniProtKB/TrEMBL
	LIX1L_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-25	Lix1l	limb and CNS expressed 1 like	Lix1l	Lix1-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-07-23	Lix1l	Lix1-like	Lix1l	Lix1 homolog (mouse)-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-18	Lix1l	Lix1 homolog (mouse)-like	LOC499677	similar to Lix1 homolog (mouse) like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC499677	similar to Lix1 homolog (mouse) like			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar