Dclk2 (doublecortin-like kinase 2) - Rat Genome Database

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Gene: Dclk2 (doublecortin-like kinase 2) Rattus norvegicus
Analyze
Symbol: Dclk2
Name: doublecortin-like kinase 2
RGD ID: 1308384
Description: Predicted to have microtubule binding activity and protein kinase activity. Predicted to be involved in forebrain development; microtubule cytoskeleton organization; and peptidyl-serine phosphorylation. Predicted to localize to cytoplasm. Orthologous to human DCLK2 (doublecortin like kinase 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: caMK-like CREB regulatory kinase 2; CL2; CLICK-II; CLICK2; Dck2; doublecortin kinase 2; doublecortin-like and CAM kinase-like 2; LOC310697; RGD1308384; serine/threonine-protein kinase DCLK2; similar to doublecortin-like kinase 2; similar to RIKEN cDNA 6330415M09
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22172,202,733 - 172,338,411 (-)NCBI
Rnor_6.0 Ensembl2186,116,624 - 186,245,771 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02186,116,624 - 186,245,937 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02205,515,413 - 205,644,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42178,793,765 - 178,923,600 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12178,743,870 - 178,873,706 (-)NCBI
Celera2166,170,116 - 166,297,500 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytoskeleton  (IEA)

Molecular Function

References

Additional References at PubMed
PMID:15611072   PMID:16684769   PMID:16869982   PMID:18075264   PMID:19342486   PMID:20236041   PMID:30053369  


Genomics

Comparative Map Data
Dclk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22172,202,733 - 172,338,411 (-)NCBI
Rnor_6.0 Ensembl2186,116,624 - 186,245,771 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02186,116,624 - 186,245,937 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02205,515,413 - 205,644,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42178,793,765 - 178,923,600 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12178,743,870 - 178,873,706 (-)NCBI
Celera2166,170,116 - 166,297,500 (-)NCBICelera
Cytogenetic Map2q34NCBI
DCLK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4150,078,445 - 150,257,438 (+)EnsemblGRCh38hg38GRCh38
GRCh384150,078,445 - 150,257,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374150,999,597 - 151,178,590 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364151,219,530 - 151,398,059 (+)NCBINCBI36hg18NCBI36
Build 344151,357,745 - 151,536,188NCBI
Celera4148,317,796 - 148,498,175 (+)NCBI
Cytogenetic Map4q31.23-q31.3NCBI
HuRef4146,722,453 - 146,904,055 (+)NCBIHuRef
CHM1_14150,976,053 - 151,155,056 (+)NCBICHM1_1
Dclk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39386,693,457 - 86,828,292 (-)NCBIGRCm39mm39
GRCm39 Ensembl386,693,458 - 86,828,159 (-)Ensembl
GRCm38386,786,150 - 86,920,952 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl386,786,151 - 86,920,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv37386,590,073 - 86,724,803 (-)NCBIGRCm37mm9NCBIm37
MGSCv36386,872,080 - 87,006,779 (-)NCBImm8
Celera386,797,139 - 86,946,298 (-)NCBICelera
Cytogenetic Map3F1NCBI
Dclk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554714,903,077 - 5,044,788 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554714,903,077 - 5,044,426 (+)NCBIChiLan1.0ChiLan1.0
DCLK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14154,064,018 - 154,239,156 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4154,064,018 - 154,239,156 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04142,412,945 - 142,590,129 (+)NCBIMhudiblu_PPA_v0panPan3
DCLK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11548,119,227 - 48,365,807 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1548,119,001 - 48,365,732 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1548,459,584 - 48,704,409 (+)NCBI
ROS_Cfam_1.01548,794,655 - 49,041,539 (+)NCBI
UMICH_Zoey_3.11548,065,813 - 48,311,655 (+)NCBI
UNSW_CanFamBas_1.01548,158,219 - 48,403,823 (+)NCBI
UU_Cfam_GSD_1.01548,481,665 - 48,728,574 (+)NCBI
Dclk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530142,105,216 - 42,259,110 (-)NCBI
SpeTri2.0NW_004936689272,136 - 428,145 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCLK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl878,681,415 - 78,854,848 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1878,680,241 - 78,854,909 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2883,617,774 - 83,722,100 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCLK2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1796,526,698 - 96,706,958 (+)NCBI
ChlSab1.1 Ensembl796,527,073 - 96,707,347 (+)Ensembl
Vero_WHO_p1.0NW_02366603776,274,270 - 76,455,164 (+)NCBI
Dclk2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248581,638,145 - 1,809,605 (+)NCBI

Position Markers
D17S1873  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22172,229,616 - 172,229,912 (+)MAPPER
mRatBN7.210105,596,188 - 105,597,792 (+)MAPPER
Rnor_6.02186,137,635 - 186,137,930NCBIRnor6.0
Rnor_6.010109,495,160 - 109,496,763NCBIRnor6.0
Rnor_5.010109,090,603 - 109,092,206UniSTSRnor5.0
Rnor_5.02205,536,197 - 205,536,492UniSTSRnor5.0
RGSC_v3.42178,814,871 - 178,815,166UniSTSRGSC3.4
Celera2166,191,112 - 166,191,407UniSTS
Cytogenetic Map2q34UniSTS
RH142675  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22172,208,714 - 172,208,814 (+)MAPPER
Rnor_6.02186,116,629 - 186,116,728NCBIRnor6.0
Rnor_5.02205,515,422 - 205,515,521UniSTSRnor5.0
RGSC_v3.42178,793,764 - 178,793,863UniSTSRGSC3.4
Celera2166,170,121 - 166,170,220UniSTS
RH 3.4 Map2651.2UniSTS
Cytogenetic Map2q34UniSTS
RH144449  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22172,317,383 - 172,317,492 (+)MAPPER
Rnor_6.02186,225,079 - 186,225,187NCBIRnor6.0
Rnor_5.02205,623,242 - 205,623,350UniSTSRnor5.0
RGSC_v3.42178,903,262 - 178,903,370UniSTSRGSC3.4
Celera2166,276,634 - 166,276,742UniSTS
RH 3.4 Map21128.3UniSTS
Cytogenetic Map2q34UniSTS
BF398261  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22172,208,889 - 172,209,026 (+)MAPPER
Rnor_6.02186,116,804 - 186,116,940NCBIRnor6.0
Rnor_5.02205,515,597 - 205,515,733UniSTSRnor5.0
RGSC_v3.42178,793,939 - 178,794,075UniSTSRGSC3.4
Celera2166,170,296 - 166,170,432UniSTS
RH 3.4 Map2649.3UniSTS
Cytogenetic Map2q34UniSTS
UniSTS:234717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22172,265,270 - 172,265,470 (+)MAPPER
Rnor_6.02186,173,490 - 186,173,689NCBIRnor6.0
Rnor_5.02205,571,653 - 205,571,852UniSTSRnor5.0
RGSC_v3.42178,851,154 - 178,851,353UniSTSRGSC3.4
Celera2166,224,790 - 166,224,989UniSTS
Cytogenetic Map2q34UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)216679272245624402Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242776916195645082Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243133606217498545Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243133606217498545Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243149788198704485Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246537589217498710Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256244671217498710Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266828049217498710Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266828236243550655Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)275687495221880419Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278321410217498710Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283754907237610852Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283819608239166203Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283819608243901375Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2116075644228737869Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2116075644228737869Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2118446646200453484Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2118446646200453484Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2118446646227707979Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2118446793228582621Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2138901276217498710Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2140566078217498545Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141583337217498710Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2142053350204585731Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2142053350228984665Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143447078188447078Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147122993240020001Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2147122993240020001Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2147522550217498710Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2149114878225501939Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2149614466205573168Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2149614466205573168Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2149614623198704357Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2155965557237742948Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2155965557254121739Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)2157914311204022555Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2157914409217498545Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2158159186217498710Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2158159186217498710Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2159585731204585731Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2161745602206745602Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2169852670207612467Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2169852670243026643Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2169852800217498545Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2172795683189857032Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2172795683189857032Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2172795683189857032Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2172795683189857032Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2172795683189857032Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2172795683189857032Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2172795683199696953Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2172795683199696953Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2172795683199696953Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2172795683199696953Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2172795683199696953Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2174160958219160958Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2175403337239166203Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2177339806222339806Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2177680772243901375Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2181522444226522444Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2181987080199696953Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2181990297240020001Rat
7771603Bp371Blood pressure QTL 3710.00001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2183864092187196901Rat
7771605Memor19Memory QTL 190.00001exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)2183864092187196901Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2183984665228984665Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2184730446229730446Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2184730446229730446Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:402
Count of miRNA genes:207
Interacting mature miRNAs:229
Transcripts:ENSRNOT00000022292, ENSRNOT00000057062, ENSRNOT00000066004
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 74 29 11
Low 3 43 49 37 19 37 8 10 35 12 8
Below cutoff 4 4 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001009691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001195832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_351805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_351806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY673997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY673998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY673999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY674000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM030581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000022292   ⟹   ENSRNOP00000022292
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2186,119,729 - 186,245,361 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000057062   ⟹   ENSRNOP00000053894
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2186,117,355 - 186,245,342 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000066004   ⟹   ENSRNOP00000062805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2186,116,630 - 186,245,771 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079954   ⟹   ENSRNOP00000075203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2186,116,630 - 186,245,771 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087088   ⟹   ENSRNOP00000070484
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2186,143,811 - 186,232,292 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088819
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2186,116,624 - 186,117,257 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089339   ⟹   ENSRNOP00000074906
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2186,117,778 - 186,245,163 (-)Ensembl
RefSeq Acc Id: NM_001009691   ⟹   NP_001009691
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,208,710 - 172,338,250 (-)NCBI
Rnor_6.02186,116,624 - 186,245,771 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
RGSC_v3.42178,793,765 - 178,923,600 (-)RGD
Celera2166,170,116 - 166,297,500 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001195832   ⟹   NP_001182761
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,208,710 - 172,338,250 (-)NCBI
Rnor_6.02186,116,624 - 186,245,771 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Celera2166,170,116 - 166,297,500 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232679   ⟹   XP_006232741
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02186,117,322 - 186,245,937 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232680   ⟹   XP_006232742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,202,733 - 172,338,410 (-)NCBI
Rnor_6.02186,117,322 - 186,245,937 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232681   ⟹   XP_006232743
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,202,733 - 172,338,410 (-)NCBI
Rnor_6.02186,117,322 - 186,245,937 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232682   ⟹   XP_006232744
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,202,733 - 172,338,410 (-)NCBI
Rnor_6.02186,117,322 - 186,245,937 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232684   ⟹   XP_006232746
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,209,810 - 172,338,411 (-)NCBI
Rnor_6.02186,117,870 - 186,245,937 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232685   ⟹   XP_006232747
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,209,810 - 172,338,410 (-)NCBI
Rnor_6.02186,117,870 - 186,245,937 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590913   ⟹   XP_017446402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02186,117,322 - 186,245,937 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005500299
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,209,819 - 172,338,411 (-)NCBI
RefSeq Acc Id: XR_351805
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,202,733 - 172,338,411 (-)NCBI
Rnor_6.02186,117,322 - 186,245,937 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Sequence:
RefSeq Acc Id: XR_351806
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22172,209,817 - 172,338,411 (-)NCBI
Rnor_6.02186,117,878 - 186,245,937 (-)NCBI
Rnor_5.02205,515,413 - 205,644,091 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001009691   ⟸   NM_001009691
- Peptide Label: isoform b
- UniProtKB: Q5MPA9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001182761   ⟸   NM_001195832
- Peptide Label: isoform a
- UniProtKB: Q5MPA9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006232744   ⟸   XM_006232682
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006232743   ⟸   XM_006232681
- Peptide Label: isoform X2
- UniProtKB: Q5MPA9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006232742   ⟸   XM_006232680
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006232741   ⟸   XM_006232679
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006232746   ⟸   XM_006232684
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006232747   ⟸   XM_006232685
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017446402   ⟸   XM_017590913
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000053894   ⟸   ENSRNOT00000057062
RefSeq Acc Id: ENSRNOP00000074906   ⟸   ENSRNOT00000089339
RefSeq Acc Id: ENSRNOP00000075203   ⟸   ENSRNOT00000079954
RefSeq Acc Id: ENSRNOP00000070484   ⟸   ENSRNOT00000087088
RefSeq Acc Id: ENSRNOP00000062805   ⟸   ENSRNOT00000066004
RefSeq Acc Id: ENSRNOP00000022292   ⟸   ENSRNOT00000022292
Protein Domains
Doublecortin   Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308384 AgrOrtholog
Ensembl Genes ENSRNOG00000016550 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022292 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000053894 UniProtKB/Swiss-Prot
  ENSRNOP00000062805 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000070484 UniProtKB/TrEMBL
  ENSRNOP00000074906 UniProtKB/Swiss-Prot
  ENSRNOP00000075203 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022292 UniProtKB/TrEMBL
  ENSRNOT00000057062 UniProtKB/Swiss-Prot
  ENSRNOT00000066004 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000079954 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000087088 UniProtKB/TrEMBL
  ENSRNOT00000089339 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.20.230 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Doublecortin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Doublecortin_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:310698 UniProtKB/Swiss-Prot
NCBI Gene 310698 ENTREZGENE
Pfam DCX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dclk2 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50309 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DCX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF89837 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JY17_RAT UniProtKB/TrEMBL
  DCLK2_RAT UniProtKB/Swiss-Prot
  E9PSS1_RAT UniProtKB/TrEMBL
  Q5MPA9 ENTREZGENE
UniProt Secondary Q5MPA7 UniProtKB/Swiss-Prot
  Q5MPA8 UniProtKB/Swiss-Prot
  Q5MPB0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-03 Dclk2  doublecortin-like kinase 2  Dclk2_predicted  similar to doublecortin-like kinase 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-04-03 Dclk3_predicted  similar to doublecortin-like kinase 2 (predicted)  Dclk2_predicted  similar to doublecortin and CaM kinase-like 2 (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2007-04-03 Dclk2_predicted  similar to doublecortin and CaM kinase-like 2 (predicted)  RGD1308384_predicted  similar to RIKEN cDNA 6330415M09 (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1308384_predicted  similar to RIKEN cDNA 6330415M09 (predicted)  RGD1308384  similar to RIKEN cDNA 6330415M09  Symbol and Name status set to approved 1299863 APPROVED
2005-12-06 RGD1308384  similar to RIKEN cDNA 6330415M09  RGD1308384_predicted  similar to RIKEN cDNA 6330415M09 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308384_predicted  similar to RIKEN cDNA 6330415M09 (predicted)  LOC310697_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310697_predicted  similar to RIKEN cDNA 6330415M09 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL