Gucy1a1 (guanylate cyclase 1 soluble subunit alpha 1)

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Gene: Gucy1a1 (guanylate cyclase 1 soluble subunit alpha 1) Rattus norvegicus

Analyze

Symbol:

Gucy1a1

Name:

guanylate cyclase 1 soluble subunit alpha 1

RGD ID:

68436

Description:

Enables ion binding activity. Contributes to adenylate cyclase activity and cytidylate cyclase activity. Involved in response to herbicide and response to organic cyclic compound. Part of guanylate cyclase complex, soluble. Human ortholog(s) of this gene implicated in Moyamoya disease. Orthologous to human GUCY1A1 (guanylate cyclase 1 soluble subunit alpha 1); PARTICIPATES IN long term depression; purine metabolic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

GCS-alpha-1; GCS-alpha-3; guanylate cyclase 1 soluble subunit alpha 3; guanylate cyclase 1, soluble, alpha 3; Guanylate cyclase soluble alpha 1 (GTP pyrophosphate - lyase); guanylate cyclase soluble subunit alpha-1; guanylate cyclase soluble subunit alpha-3; Guanylate cyclase, soluble, alpha 1 (GTP pyrophosphate - lyase); Gucy1a3; SGC; soluble guanylate cyclase; soluble guanylate cyclase large subunit

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Allele / Splice:

Gucy1a3^em1Mcwi

Genetic Models:

SS-Gucy1a3^em1Mcwi

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	167,418,615 - 167,482,293 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	167,418,640 - 167,481,671 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	174,618,756 - 174,679,844 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	172,639,998 - 172,701,086 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	167,227,585 - 167,288,671 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	181,045,694 - 181,103,321 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	181,045,703 - 181,102,918 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	200,453,480 - 200,515,219 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	173,756,824 - 173,818,316 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	173,705,122 - 173,768,506 (-)	NCBI
Celera	2	161,450,514 - 161,511,622 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenoid cystic carcinoma (ISO)

Colonic Neoplasms (ISO)

coronary artery disease (ISO)

genetic disease (ISO)

hypertension (ISO)

Moyamoya Disease 1 (ISO)

Moyamoya Disease 6 with Achalasia (ISO)

myocardial infarction (ISO)

primary open angle glaucoma (ISS)

Pulmonary Edema of Mountaineers (ISO)

Salivary Gland Neoplasms (ISO)

thrombosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3',5'-cyclic GMP (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

7H-xanthine (EXP)

9H-xanthine (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

apocynin (EXP)

aristolochic acid A (ISO)

arotinoid acid (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

carbonyl sulfide (EXP)

CHIR 99021 (ISO)

chloroprene (EXP,ISO)

cinaciguat (EXP,ISO)

clobetasol (ISO)

cocaine (EXP)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

cortisol (ISO)

crocidolite asbestos (ISO)

cyanocob(III)alamin (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

diethyl malate (ISO)

dioxygen (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

fenvalerate (EXP)

ferroheme b (EXP)

folic acid (ISO)

formaldehyde (ISO)

glafenine (EXP)

GTP (ISO)

heme b (EXP)

hydrogen peroxide (EXP)

hydroxocobalamin (ISO)

isoflavones (EXP)

L-ascorbic acid (ISO)

L-ascorbic acid 2-phosphate (ISO)

lead diacetate (EXP)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

menadione (EXP)

methylseleninic acid (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

nickel atom (ISO)

nimesulide (EXP)

nitric oxide (ISO)

nitroglycerin (EXP)

nitroprusside (EXP)

NONOate(1-) (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-toluidine (EXP)

panobinostat (ISO)

paraquat (EXP)

pentachlorophenol (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

PhIP (EXP)

pioglitazone (ISO)

pirinixic acid (EXP,ISO)

potassium dichromate (ISO)

potassium hexacyanoferrate(3-) (ISO)

progesterone (EXP)

protoporphyrin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

Soman (EXP)

taurine (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

toluene (EXP)

topotecan (EXP)

trichloroethene (EXP)

tunicamycin (ISO)

valproic acid (EXP,ISO)

vancomycin (ISO)

vinclozolin (EXP)

XAV939 (ISO)

zinc protoporphyrin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cGMP biosynthetic process (IBA,IEA,ISO)

cGMP-mediated signaling (IBA)

nitric oxide mediated signal transduction (ISO)

nitric oxide-cGMP-mediated signaling pathway (IEA,ISO)

positive regulation of nitric oxide mediated signal transduction (IEA,ISO)

regulation of blood pressure (IEA,ISO)

relaxation of vascular associated smooth muscle (IEA,ISO)

response to herbicide (IEP)

response to organic cyclic compound (IEP)

response to oxygen levels (IBA)

retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission (IEA,ISO)

Cellular Component

cytosol (TAS)

GABA-ergic synapse (IEA,ISO)

glutamatergic synapse (IEA,ISO)

guanylate cyclase complex, soluble (IBA,IDA,IEA,ISO,TAS)

protein-containing complex (IDA)

Molecular Function

adenylate cyclase activity (IDA)

cytidylate cyclase activity (IDA)

GTP binding (IEA)

guanylate cyclase activity (IBA,IEA,ISO,TAS)

heme binding (IEA)

ion binding (IDA)

protein binding (ISO)

protein-containing complex binding (IDA)

Molecular Pathway Annotations Click to see Annotation Detail View

long term depression (IEA)

purine metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Modulation of voltage-gated Ca2+ current in vestibular hair cells by nitric oxide.	Almanza A, etal., J Neurophysiol. 2007 Feb;97(2):1188-95. Epub 2006 Dec 20.
2.	Genetic mapping of soluble guanylyl cyclase genes: implications for linkage to blood pressure in the Dahl rat.	Azam M, etal., Hypertension 1998 Jul;32(1):149-54.
3.	Beta-amyloid peptides decrease soluble guanylyl cyclase expression in astroglial cells.	Baltrons MA, etal., Neurobiol Dis 2002 Jul;10(2):139-49.
4.	Nucleotidyl cyclase activity of soluble guanylyl cyclase alpha1beta1.	Beste KY, etal., Biochemistry. 2012 Jan 10;51(1):194-204. doi: 10.1021/bi201259y. Epub 2011 Dec 13.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
7.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
8.	Post-transcriptional Regulation of Soluble Guanylyl Cyclase Expression in Rat Aorta.	Kloss S, etal., J Biol Chem 2003 Jan 24;278(4):2377-83.
9.	Diets high in selenium and isoflavones decrease androgen-regulated gene expression in healthy rat dorsolateral prostate.	Legg RL, etal., Reprod Biol Endocrinol. 2008 Nov 24;6:57.
10.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
11.	Effect of paraquat exposure on nitric oxide-responsive genes in rat mesencephalic cells.	Moran JM, etal., Nitric Oxide. 2010 Apr 11.
12.	Molecular cloning and expression of cDNAs coding for soluble guanylate cyclase from rat lung.	Nakane M, etal., J Biol Chem 1990 Oct 5;265(28):16841-5.
13.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
14.	Regional distribution of protein and activity of the nitric oxide receptor, soluble guanylyl cyclase, in rat brain suggests multiple mechanisms of regulation.	Nedvetsky PI, etal., Brain Res 2002 Sep 20;950(1-2):148-54.
15.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
16.	Interaction between the 90-kDa heat shock protein and soluble guanylyl cyclase: physiological significance and mapping of the domains mediating binding.	Papapetropoulos A, etal., Mol Pharmacol. 2005 Oct;68(4):1133-41. Epub 2005 Jul 15.
17.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
18.	GOA pipeline	RGD automated data pipeline
19.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
20.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
21.	The alpha 1 subunit of soluble guanylyl cyclase is expressed prenatally in the rat brain.	Smigrodzki R and Levitt P, Brain Res Dev Brain Res 1996 Dec 23;97(2):226-34.
22.	Activation and up-regulation of spinal cord nitric oxide receptor, soluble guanylate cyclase, after formalin injection into the rat hind paw.	Tao YX and Johns RA, Neuroscience 2002;112(2):439-46.
23.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
24.	Dissociation of nitric oxide from soluble guanylate cyclase and heme-nitric oxide/oxygen binding domain constructs.	Winger JA, etal., J Biol Chem. 2007 Jan 12;282(2):897-907. Epub 2006 Nov 10.

Additional References at PubMed

PMID:12477932	PMID:14749300	PMID:14754757	PMID:16131543	PMID:16489110	PMID:16614755	PMID:17170090	PMID:18022154	PMID:18474600	PMID:18550612	PMID:18572161	PMID:18635821
PMID:19141686	PMID:19466990	PMID:20009348	PMID:20023176	PMID:20353168	PMID:20459051	PMID:22806360	PMID:23093402	PMID:23505436	PMID:24982890	PMID:27009048	PMID:27923787
PMID:28782641	PMID:30260287	PMID:32358060	PMID:35089807

Genomics

Comparative Map Data

Gucy1a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	167,418,615 - 167,482,293 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	167,418,640 - 167,481,671 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	174,618,756 - 174,679,844 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	172,639,998 - 172,701,086 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	167,227,585 - 167,288,671 (-)	NCBI	Rnor_WKY
Rnor_6.0	2	181,045,694 - 181,103,321 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	181,045,703 - 181,102,918 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	200,453,480 - 200,515,219 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	173,756,824 - 173,818,316 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	173,705,122 - 173,768,506 (-)	NCBI
Celera	2	161,450,514 - 161,511,622 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

GUCY1A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	155,666,848 - 155,737,059 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	4	155,666,726 - 155,737,059 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	156,588,000 - 156,658,211 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	156,807,328 - 156,871,232 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	156,945,482 - 157,009,379	NCBI
Celera	4	153,919,477 - 153,989,823 (+)	NCBI		Celera
Cytogenetic Map	4	q32.1	NCBI
HuRef	4	152,327,271 - 152,397,264 (+)	NCBI		HuRef
CHM1_1	4	156,565,607 - 156,635,931 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	158,999,647 - 159,069,856 (+)	NCBI		T2T-CHM13v2.0

Gucy1a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	81,999,734 - 82,053,253 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	81,999,734 - 82,053,096 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	82,092,427 - 82,145,946 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	82,092,427 - 82,145,789 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	81,896,349 - 81,949,799 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	82,178,354 - 82,231,000 (-)	NCBI		MGSCv36	mm8
Celera	3	82,117,270 - 82,170,809 (-)	NCBI		Celera
Cytogenetic Map	3	E3	NCBI

Gucy1a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955471	11,367,282 - 11,424,273 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955471	11,367,318 - 11,422,199 (-)	NCBI	ChiLan1.0	ChiLan1.0

GUCY1A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	4	153,933,876 - 154,004,517 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	148,032,167 - 148,102,757 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	159,850,092 - 159,920,159 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	159,850,107 - 159,913,338 (+)	Ensembl	panpan1.1		panPan2

GUCY1A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	53,172,914 - 53,236,200 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	53,174,157 - 53,234,533 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	53,510,720 - 53,570,219 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	53,880,516 - 53,943,086 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	53,881,077 - 53,942,856 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	53,134,895 - 53,194,847 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	53,244,742 - 53,304,495 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	53,557,797 - 53,618,055 (+)	NCBI		UU_Cfam_GSD_1.0

Gucy1a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	37,135,116 - 37,192,728 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936576	2,353,761 - 2,411,425 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936576	2,353,874 - 2,411,747 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GUCY1A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	44,449,290 - 44,518,135 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	44,448,758 - 44,520,737 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	46,457,572 - 46,537,279 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GUCY1A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	102,206,438 - 102,310,535 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	102,238,477 - 102,303,673 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	81,715,008 - 81,968,286 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gucy1a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624848	2,525,153 - 2,560,025 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624848	2,522,935 - 2,588,758 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gucy1a1
269 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	550
Count of miRNA genes:	260
Interacting mature miRNAs:	337
Transcripts:	ENSRNOT00000017190
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147686913	168355276	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	175950118	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	152413072	175950118	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	175950118	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	175950118	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	175950118	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	175950118	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat

Markers in Region

RH133297

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	167,418,677 - 167,418,858 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	181,045,757 - 181,045,937	NCBI	Rnor6.0
Rnor_5.0	2	200,453,543 - 200,453,723	UniSTS	Rnor5.0
RGSC_v3.4	2	173,755,055 - 173,755,235	UniSTS	RGSC3.4
Celera	2	161,448,745 - 161,448,925	UniSTS
RH 3.4 Map	2	1090.1	UniSTS
Cytogenetic Map	2	q33	UniSTS

Genetic Models

This gene Gucy1a1 is modified in the following models/strains

SS-Gucy1a3^em1Mcwi

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	37	30	14	19	14	2	2	62	33	31	11	2
Low	1	6	27	27		27	6	9	12	2	10		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB096020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M57405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U60835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000017190 ⟹ ENSRNOP00000017190

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	167,418,640 - 167,481,671 (-)	Ensembl
Rnor_6.0 Ensembl	2	181,045,703 - 181,102,918 (-)	Ensembl

RefSeq Acc Id:

NM_017090 ⟹ NP_058786

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	167,420,447 - 167,481,557 (-)	NCBI
Rnor_6.0	2	181,047,526 - 181,102,793 (-)	NCBI
Rnor_5.0	2	200,453,480 - 200,515,219 (-)	NCBI
RGSC_v3.4	2	173,756,824 - 173,818,316 (-)	RGD
Celera	2	161,450,514 - 161,511,622 (-)	RGD

Sequence:

show sequence

CGGATGCCCCTGGCCTCCCGTGACCGCATCATGATGCTGGGCCACTCGTGTCTTTGAGTCAGTA
GAAGCAGATCTTCATCAGTCCACATCAACACCGGCTAATAAGGAGGAAACCACTGCCAAGCTCC
AGGAACACCATGTTCTGCAGGAAGTTCAAAGATCTCAAGATCACGGGGGAGTGTCCTTTCTCCT
TACTGGCTCCTGGTCAGGTTCCTACGGAGCCAATAGAGGAGGTGGCCGGAGTCTCTGAGAGCTG
CCAGGCCACTCTGCCCACCTGCCAGGAGTTTGCTGAGAATGCAGAAGGGAGTCACCCCCAAAGA
AAGACAAGCCGCAACAGAGTCTACCTACACACCCTGGCAGAGAGTATTGGCAAGCTCATTTTCC
CAGAGTTTGAGAGACTGAACCTTGCACTTCAGAGAACATTGGCAAAGCACAAAATAAAGGAAAA
CAGGAATTCTTCAGAAAAAGAAGACCTTGAAAGAATAATTGCAGAAGAAGCAATTGCGGCAGGT
GTCCCAGTGGAGGCGCTCAAAGACTCTCTGGGTGAGGAACTGTTCAAGATCTGTTATGAGGAAG
ATGAGCACATCCTGGGCGTGGTTGGCGGCACCCTGAAGGACTTTCTCAACAGCTTCAGCACGCT
CCTGAAGCAGAGCAGCCACTGCCAGGAGGCGGAGAGGCGGGGGCGACTGGAAGATGCCTCCATC
TTGTGCCTGGACAAGGACCAGGACTTTCTAAATGTTTACTACTTCTTCCCGAAGAGAACCACAG
CCCTGCTTCTCCCCGGTATCATTAAAGCGGCTGCTCGCATACTGTACGAAAGCCACGTGGAGGT
GTCCCTGATGCCTCCCTGCTTCCGAAGTGAGTGTACCGAATTCGTGAACCAGCCCTATTTGCTC
TACTCGGTCCACGTGAAGAGCACCAAGCCTTCTCTGTCCCCAGGCAAACCCCAGTCCTCGCTAG
TGATCCCTACTTCGCTCTTCTGCAAAACTTTCCCATTCCACTTCATGCTGGACCGTGACCTGGC
CATTCTGCAGCTGGGTAATGGCATCAGAAGGCTGGTGAACAAGAGGGACTTCCAAGGGAAGCCC
AACTTTGAAGAGTTCTTTGAAATTCTAACTCCCAAAATCAACCAGACATTTAGCGGCATCATGA
CAATGTTGAATATGCAGTTTGTCATACGGGTGAGGAGATGGGATAACTTAGTGAAGAAATCTTC
AAGGGTTATGGACCTCAAAGGTCAAATGATCTACATCGTTGAATCCAGTGCCATCTTGTTCTTA
GGGTCGCCGTGTGTGGACAGATTGGAAGATTTCACAGGACGGGGTCTCTATCTGTCTGACATCC
CGATTCATAATGCCCTGAGGGATGTTGTCTTGATAGGGGAACAGGCACGGGCTCAAGATGGCCT
CAAGAAGAGGTTGGGAAAGCTGAAGGCAACCTTGGAGCATGCCCACCAAGCCCTGGAGGAGGAG
AAGAAGAAGACGGTAGATCTCCTGTGTTCTATCTTTCCCTCTGAGGTTGCTCAGCAGCTCTGGC
AAGGACAAATTGTGCAAGCCAAGAAGTTCAATGAGGTCACCATGCTCTTCTCAGATATCGTAGG
GTTCACTGCCATCTGCTCTCAGTGTTCACCTCTGCAGGTCATCACCATGCTCAACGCTCTCTAT
ACTCGCTTTGACCAACAGTGTGGAGAGCTGGATGTCTACAAGGTGGAGACCATCGGAGATGCAT
ATTGTGTGGCAGGGGGATTGCACAGAGAGAGTGACACACATGCTGTCCAGATAGCACTGATGGC
CCTGAAGATGATGGAGCTCTCCAATGAGGTCATGTCTCCCCACGGAGAACCTATCAAGATGCGA
ATCGGACTGCATTCTGGGTCAGTGTTTGCTGGAGTTGTTGGAGTGAAGATGCCCCGATATTGCC
TGTTTGGAAACAATGTCACTCTGGCTAACAAATTTGAGTCCTGCAGTGTGCCTCGGAAAATCAA
TGTCAGCCCCACGACATACAGGTTACTCAAAGACTGTCCTGGCTTTGTGTTCACCCCGAGATCG
AGGGAGGAGCTTCCACCAAACTTCCCTAGTGACATTCCTGGAATCTGTCACTTTCTGGATGCTT
ATCAACATCAAGGACCTAATTCTAAACCATGGTTCCAGCAGAAAGATGCAGAAGATGGAAACGC
TAACTTCTTAGGCAAAGCATCAGGGGTAGATTAGTGAGCCGCATGTTTCTGTGTTTGATGCCTT
TGAGGGTGCGCAGAATCTCTGAAATGACTTTAGGATTGCAGAAGATAAAAAACTGTGTTAAAAT
TGCAGGGGTGAAACCCAGTTTCCTCTGTTTCCCATTTAAGATGGAAAAAAAAAAGTGTTCAATG
CTTCAGCGCTTTCAACCTTCTTCTCTATTTAAGAAACAAACCTCAAAAGTGACTTGTGACTTTT
GGGGACATAGCTTTGTTCTAGAGCAGTCACTACCTGCACTCGAAATCCAACACAGTGTACATAT
TCCAGACAATTGTAGTCAAGTTTAAGTGTCAAAGTAATGTACTCACCTGTGGCCTGTGACCAGT
GCAAACTGTGGTTATTACAGTGTGTCTGTGGTAGTGTTGCCTGTAAATCTCTGAATAGAAATGA
CAGTGTTTAATTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232518 ⟹ XP_006232580

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	167,418,615 - 167,482,293 (-)	NCBI
Rnor_6.0	2	181,045,694 - 181,103,321 (-)	NCBI
Rnor_5.0	2	200,453,480 - 200,515,219 (-)	NCBI

Sequence:

show sequence

GTATTAACAGCATATAGGGCTGAGTGTAGTGAACCAAATAGAAGCAAGACCTTACACAAAAGAA
ATAATATTTCTGTGACCACAAAATTACCTTCGAACAGAGTAGATTAGCCTCAAAGCTAAAAGCC
AGGCCACCAAAGCCAAGGGAGGAGAGAAAAACCTCCCCACCACGGTTTGAGTTTCAAATTAAGG
AAGCTACAGTTGGTCTGCACCAGCTAGTACGAGAGAAAAGGTTTTTGTTTTTAACGTGCCAACT
TTTCCTAGAGTCTCTCCTTTGTTTTCTCTTCCTTGTCCCCTTCCCTGCTGTGTGTGTGTCTGGC
TTTGGTGGTTTGGAGGACAGCGATTGGGCGGGGAGCAGGACTCCGTTCTCAGGAGCTGAGCCTG
GGAGGAGTGGGAGGGACTCGGAGCAGCGGGGTTCTCACACACAGCCTTCCAGGCGGTCCTTCTC
CAGTGCCTGCCAGCTCGACCCCAAGGCGAAGAGCAGCAGTGCTCAGCCCGGGGAGTCCTCGAAG
CGAAGACACCTGCGCCCGGATGCCCCTGGCCTCCCGTGACCGCATCATGCATACCTCCCCTCTT
CCCAGCCAGCTCTATACCAACCTCAGAAGTGACCACACTGTTTCTAAAATGCTGGGCCACTCGT
GTCTTTGAGTCAGTAGAAGCAGATCTTCATCAGTCCACATCAACACCGGCTAATAAGGAGGAAA
CCACTGCCAAGCTCCAGGAACACCATGTTCTGCAGGAAGTTCAAAGATCTCAAGATCACGGGGG
AGTGTCCTTTCTCCTTACTGGCTCCTGGTCAGGTTCCTACGGAGCCAATAGAGGAGGTGGCCGG
AGTCTCTGAGAGCTGCCAGGCCACTCTGCCCACCTGCCAGGAGTTTGCTGAGAATGCAGAAGGG
AGTCACCCCCAAAGAAAGACAAGCCGCAACAGAGTCTACCTACACACCCTGGCAGAGAGTATTG
GCAAGCTCATTTTCCCAGAGTTTGAGAGACTGAACCTTGCACTTCAGAGAACATTGGCAAAGCA
CAAAATAAAGGAAAACAGGAATTCTTCAGAAAAAGAAGACCTTGAAAGAATAATTGCAGAAGAA
GCAATTGCGGCAGGTGTCCCAGTGGAGGCGCTCAAAGACTCTCTGGGTGAGGAACTGTTCAAGA
TCTGTTATGAGGAAGATGAGCACATCCTGGGCGTGGTTGGCGGCACCCTGAAGGACTTTCTCAA
CAGCTTCAGCACGCTCCTGAAGCAGAGCAGCCACTGCCAGGAGGCGGAGAGGCGGGGGCGACTG
GAAGATGCCTCCATCTTGTGCCTGGACAAGGACCAGGACTTTCTAAATGTTTACTACTTCTTCC
CGAAGAGAACCACAGCCCTGCTTCTCCCCGGTATCATTAAAGCGGCTGCTCGCATACTGTACGA
AAGCCACGTGGAGGTGTCCCTGATGCCTCCCTGCTTCCGAAGTGAGTGTACCGAATTCGTGAAC
CAGCCCTATTTGCTCTACTCGGTCCACGTGAAGAGCACCAAGCCTTCTCTGTCCCCAGGCAAAC
CCCAGTCCTCGCTAGTGATCCCTACTTCGCTCTTCTGCAAAACTTTCCCATTCCACTTCATGCT
GGACCGTGACCTGGCCATTCTGCAGCTGGGTAATGGCATCAGAAGGCTGGTGAACAAGAGGGAC
TTCCAAGGGAAGCCCAACTTTGAAGAGTTCTTTGAAATTCTAACTCCCAAAATCAACCAGACAT
TTAGCGGCATCATGACAATGTTGAATATGCAGTTTGTCATACGGGTGAGGAGATGGGATAACTT
AGTGAAGAAATCTTCAAGGGTTATGGACCTCAAAGGTCAAATGATCTACATCGTTGAATCCAGT
GCCATCTTGTTCTTAGGGTCGCCGTGTGTGGACAGATTGGAAGATTTCACAGGACGGGGTCTCT
ATCTGTCTGACATCCCGATTCATAATGCCCTGAGGGATGTTGTCTTGATAGGGGAACAGGCACG
GGCTCAAGATGGCCTCAAGAAGAGGTTGGGAAAGCTGAAGGCAACCTTGGAGCATGCCCACCAA
GCCCTGGAGGAGGAGAAGAAGAAGACGGTAGATCTCCTGTGTTCTATCTTTCCCTCTGAGGTTG
CTCAGCAGCTCTGGCAAGGACAAATTGTGCAAGCCAAGAAGTTCAATGAGGTCACCATGCTCTT
CTCAGATATCGTAGGGTTCACTGCCATCTGCTCTCAGTGTTCACCTCTGCAGGTCATCACCATG
CTCAACGCTCTCTATACTCGCTTTGACCAACAGTGTGGAGAGCTGGATGTCTACAAGGTGGAGA
CCATCGGAGATGCATATTGTGTGGCAGGGGGATTGCACAGAGAGAGTGACACACATGCTGTCCA
GATAGCACTGATGGCCCTGAAGATGATGGAGCTCTCCAATGAGGTCATGTCTCCCCACGGAGAA
CCTATCAAGATGCGAATCGGACTGCATTCTGGGTCAGTGTTTGCTGGAGTTGTTGGAGTGAAGA
TGCCCCGATATTGCCTGTTTGGAAACAATGTCACTCTGGCTAACAAATTTGAGTCCTGCAGTGT
GCCTCGGAAAATCAATGTCAGCCCCACGACATACAGGTTACTCAAAGACTGTCCTGGCTTTGTG
TTCACCCCGAGATCGAGGGAGGAGCTTCCACCAAACTTCCCTAGTGACATTCCTGGAATCTGTC
ACTTTCTGGATGCTTATCAACATCAAGGACCTAATTCTAAACCATGGTTCCAGCAGAAAGATGC
AGAAGATGGAAACGCTAACTTCTTAGGCAAAGCATCAGGGGTAGATTAGTGAGCCGCATGTTTC
TGTGTTTGATGCCTTTGAGGGTGCGCAGAATCTCTGAAATGACTTTAGGATTGCAGAAGATAAA
AAACTGTGTTAAAATTGCAGGGGTGAAACCCAGTTTCCTCTGTTTCCCATTTAAGATGGAAAAA
AAAAAGTGTTCAATGCTTCAGCGCTTTCAACCTTCTTCTCTATTTAAGAAACAAACCTCAAAAG
TGACTTGTGACTTTTGGGGACATAGCTTTGTTCTAGAGCAGTCACTACCTGCACTCGAAATCCA
ACACAGTGTACATATTCCAGACAATTGTAGTCAAGTTTAAGTGTCAAAGTAATGTACTCACCTG
TGGCCTGTGACCAGTGCAAACTGTGGTTATTACAGTGTGTCTGTGGTAGTGTTGCCTGTAAATC
TCTGAATAGAAATGACAGTGTTTAATTCTGCAAGAGCTTCCAGCCTCTTGACTCTACATTCAAT
TAGGTTTCCTTATTCTATCCTGGCGTATGTAACACAATAGGCCAGCGCCTTCTTCCCAGCTACA
TCTTTGTGCCTATGTACGTGTTTTCCTTTCCTTTCCTTTCCTTTCCTTTTTTTTTTTTAAGAAA
ATAAGCAATTAGACATAGGATAAAATGTGATATAAAGTAGTTCAGTAAGTGTCAAAGAATATTT
TCATGTTTTGTCATTAAAGATATTATCTATAGCACAATATATAATACAACAAATACTTTTCATT
TTGATCCTATCTGTGATAAAACATTTTAATTAATAGTAACAATGTACTTCCTACTAATCCATGT
AAAATTTACTAATAGCAAAACTTTCAGAGTAAAAGTATTTACATACATTGTTAAAATGCAATAA
CATTCAAATTTAATTAAGGCATAGAATTAATATTTGCACACAGAGAGCCTACTGTAGAGGACAG
TGGCAAAGTGTTCACAAACACACGTGTTTAAATGATCCTCTACTGCCGTGTTGAGCCATAAAAG
CCAAGGGGAAAAGTTTTAAGTCAGAAGTAGAAAAATAGACTTCATTTTGTCTTTTTTGATACCT
TCTTAAGTATTTCTACTGACCATTTAGTGTATGTGTATGTGTTAAGAATCAAAATTTTTATTAC
TCAGTGTACACCTGTGAAGTATTATTCTACTTTAAATATACTAATATTTTCTACAGAAACCACT
AGTATCATTGAAGAAAATGTCACTATGATTTCATTATAGAGATCCTGATACGTTTTTTTTTCTT
CTGGAGTTTAAACTAATGTCCTTTCCTTCCCCTGCCCTCCTCTGCAGTCCTCTTTCTTCCTCTC
CCATTGGGCATGTTTGTGTGATTCTGTGGGCTGAACACAGGAACTGTGCATGCTGGGTAAAGAC
TGTTACTGAGTAACTTCCTCACCATGGGGCTTCAGTTTTATTGCTAATGGTGACAGTTTACATT
CCCGAGTGTTAATTTGGTAAAAGGAAGTGACTTTAAAAGAAGACCAACTTCAAAGCCAAGAGAG
ATAGACATAATTGAATTTTTCAATCAGTATTAGTAGAATGGTAGACATTCTGAATTTCTATGTG
TGTAGTTGAAAAGAAACTCAGTTTAAAAGTCATTTTCTACCTCCAATAGTCTTCAAGCATCCAG
AGCAACAGACATCTTTTACCTAGCTCTAGTTTCCAAGGGGGACAACTAAACCACCCAATGGATT
TCTTTAAAGGCGGATATTGTCTCATTAAACAGTCACACTGATGTTGGATAGTGTCACGGGCCTT
GCAAAGGTGTATTTAGGATGTCACAATGATGTGGAATTCAATGAATATTTATTAAGAAGGTAAA
GAGGTAAATACCCCCTCTTTCTGGAACTAATATTCAATACAGGGGAACTAGTAGGAATCACAGA
CAATTAGAAAGCGTAAAACAGGATGTCATCCTCTTAAGCTGTGCAGTTAGGTGGTTGCTACATT
AGTAATAATCTGATTCAGAAGCTTGCACATTAATTAGAATTAATTCTCCCACTGTCTTTTAGGG
ATGGTGATAGAACTCAATGACAAAGCACCTGCCTAGCATTTAGGCAGTCCTGTTCCGACCCAAG
CAGCATGAAGGAATTACATGTATCTCTCATGTGCATATGATGTATGATCACACTCACCTGTGTC
ACCTGTGTACACACCTGGGGCAAATGGAGGAACTGTATCTAATTCAAGGCAAACTACCGGAGCT
CCATGTACGGTTCCTATAACTTTTCTATTATTTTGTCATTTTAGCTAAATAAAAACATTATCAA
AAATTA

hide sequence

RefSeq Acc Id:

XM_008761107 ⟹ XP_008759329

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	167,418,615 - 167,482,293 (-)	NCBI
Rnor_6.0	2	181,045,694 - 181,074,131 (-)	NCBI

Sequence:

show sequence

AGAAAACATTTCAAAAAGAAACAAAGAAAGGAAGCCAGTCCTCAATGAATCCCCAAATTCTAAG
CATTGCTTCTCAGTCAGTAGAATTCTTGTGGGAAAGGTCACAAGTGCTGTGCTTATAGAGATGT
ATTTTACAAAGGAGTCTCCTGGAGGTAACTATACCTAAAGCTTTGTTGTGGTAATTGTCATTCG
AAAAGCTTTTCCCAAAGATTTAGTGTATTTAAATGTGTAACAAATAAATCTCTTGGGGTCAGAC
TCCATCAGTTTTGGCCCAGTGTTGGCTAACTAAGGTGTAGCTGAACCCAAGTTTCATTCTTACC
TCACTCAGATAGTTTCTCAATATATATAGAATAACACATAAAGTATTAAGGGGAGCACTGGCAT
GTACTGTTCTGATGTGTAGACAGGACACACATGAAATACAGTAGTTCTCGCATTAATGAAGCAA
TAATGAAGATCGTTCCTATGAAATCAAACAGAAACAAATGGGGTGCAGAAGGTGGAAATTGGTA
GTTTTTGCTAAGGATGTTTAGAGAAAATAATATTTGATACTCTGGTGGCAATTTCCCTGTGGAT
GATTGTACTACCTTTTTCTTTGTGCATCTAGCTATCTGTTGTGTGTCCTTTCTCTTCTGACTTT
CCACTGCTCATAGATGCTGGGCCACTCGTGTCTTTGAGTCAGTAGAAGCAGATCTTCATCAGTC
CACATCAACACCGGCTAATAAGGAGGAAACCACTGCCAAGCTCCAGGAACACCATGTTCTGCAG
GAAGTTCAAAGATCTCAAGATCACGGGGGAGTGTCCTTTCTCCTTACTGGCTCCTGGTCAGGTT
CCTACGGAGCCAATAGAGGAGGTGGCCGGAGTCTCTGAGAGCTGCCAGGCCACTCTGCCCACCT
GCCAGGAGTTTGCTGAGAATGCAGAAGGGAGTCACCCCCAAAGAAAGACAAGCCGCAACAGAGT
CTACCTACACACCCTGGCAGAGAGTATTGGCAAGCTCATTTTCCCAGAGTTTGAGAGACTGAAC
CTTGCACTTCAGAGAACATTGGCAAAGCACAAAATAAAGGAAAACAGGAATTCTTCAGAAAAAG
AAGACCTTGAAAGAATAATTGCAGAAGAAGCAATTGCGGCAGGTGTCCCAGTGGAGGCGCTCAA
AGACTCTCTGGGTGAGGAACTGTTCAAGATCTGTTATGAGGAAGATGAGCACATCCTGGGCGTG
GTTGGCGGCACCCTGAAGGACTTTCTCAACAGCTTCAGCACGCTCCTGAAGCAGAGCAGCCACT
GCCAGGAGGCGGAGAGGCGGGGGCGACTGGAAGATGCCTCCATCTTGTGCCTGGACAAGGACCA
GGACTTTCTAAATGTTTACTACTTCTTCCCGAAGAGAACCACAGCCCTGCTTCTCCCCGGTATC
ATTAAAGCGGCTGCTCGCATACTGTACGAAAGCCACGTGGAGGTGTCCCTGATGCCTCCCTGCT
TCCGAAGTGAGTGTACCGAATTCGTGAACCAGCCCTATTTGCTCTACTCGGTCCACGTGAAGAG
CACCAAGCCTTCTCTGTCCCCAGGCAAACCCCAGTCCTCGCTAGTGATCCCTACTTCGCTCTTC
TGCAAAACTTTCCCATTCCACTTCATGCTGGACCGTGACCTGGCCATTCTGCAGCTGGGTAATG
GCATCAGAAGGCTGGTGAACAAGAGGGACTTCCAAGGGAAGCCCAACTTTGAAGAGTTCTTTGA
AATTCTAACTCCCAAAATCAACCAGACATTTAGCGGCATCATGACAATGTTGAATATGCAGTTT
GTCATACGGGTGAGGAGATGGGATAACTTAGTGAAGAAATCTTCAAGGGTTATGGACCTCAAAG
GTCAAATGATCTACATCGTTGAATCCAGTGCCATCTTGTTCTTAGGGTCGCCGTGTGTGGACAG
ATTGGAAGATTTCACAGGACGGGGTCTCTATCTGTCTGACATCCCGATTCATAATGCCCTGAGG
GATGTTGTCTTGATAGGGGAACAGGCACGGGCTCAAGATGGCCTCAAGAAGAGGTTGGGAAAGC
TGAAGGCAACCTTGGAGCATGCCCACCAAGCCCTGGAGGAGGAGAAGAAGAAGACGGTAGATCT
CCTGTGTTCTATCTTTCCCTCTGAGGTTGCTCAGCAGCTCTGGCAAGGACAAATTGTGCAAGCC
AAGAAGTTCAATGAGGTCACCATGCTCTTCTCAGATATCGTAGGGTTCACTGCCATCTGCTCTC
AGTGTTCACCTCTGCAGGTCATCACCATGCTCAACGCTCTCTATACTCGCTTTGACCAACAGTG
TGGAGAGCTGGATGTCTACAAGGTGGAGACCATCGGAGATGCATATTGTGTGGCAGGGGGATTG
CACAGAGAGAGTGACACACATGCTGTCCAGATAGCACTGATGGCCCTGAAGATGATGGAGCTCT
CCAATGAGGTCATGTCTCCCCACGGAGAACCTATCAAGATGCGAATCGGACTGCATTCTGGGTC
AGTGTTTGCTGGAGTTGTTGGAGTGAAGATGCCCCGATATTGCCTGTTTGGAAACAATGTCACT
CTGGCTAACAAATTTGAGTCCTGCAGTGTGCCTCGGAAAATCAATGTCAGCCCCACGACATACA
GGTTACTCAAAGACTGTCCTGGCTTTGTGTTCACCCCGAGATCGAGGGAGGAGCTTCCACCAAA
CTTCCCTAGTGACATTCCTGGAATCTGTCACTTTCTGGATGCTTATCAACATCAAGGACCTAAT
TCTAAACCATGGTTCCAGCAGAAAGATGCAGAAGATGGAAACGCTAACTTCTTAGGCAAAGCAT
CAGGGGTAGATTAGTGAGCCGCATGTTTCTGTGTTTGATGCCTTTGAGGGTGCGCAGAATCTCT
GAAATGACTTTAGGATTGCAGAAGATAAAAAACTGTGTTAAAATTGCAGGGGTGAAACCCAGTT
TCCTCTGTTTCCCATTTAAGATGGAAAAAAAAAAGTGTTCAATGCTTCAGCGCTTTCAACCTTC
TTCTCTATTTAAGAAACAAACCTCAAAAGTGACTTGTGACTTTTGGGGACATAGCTTTGTTCTA
GAGCAGTCACTACCTGCACTCGAAATCCAACACAGTGTACATATTCCAGACAATTGTAGTCAAG
TTTAAGTGTCAAAGTAATGTACTCACCTGTGGCCTGTGACCAGTGCAAACTGTGGTTATTACAG
TGTGTCTGTGGTAGTGTTGCCTGTAAATCTCTGAATAGAAATGACAGTGTTTAATTCTGCAAGA
GCTTCCAGCCTCTTGACTCTACATTCAATTAGGTTTCCTTATTCTATCCTGGCGTATGTAACAC
AATAGGCCAGCGCCTTCTTCCCAGCTACATCTTTGTGCCTATGTACGTGTTTTCCTTTCCTTTC
CTTTCCTTTCCTTTTTTTTTTTTAAGAAAATAAGCAATTAGACATAGGATAAAATGTGATATAA
AGTAGTTCAGTAAGTGTCAAAGAATATTTTCATGTTTTGTCATTAAAGATATTATCTATAGCAC
AATATATAATACAACAAATACTTTTCATTTTGATCCTATCTGTGATAAAACATTTTAATTAATA
GTAACAATGTACTTCCTACTAATCCATGTAAAATTTACTAATAGCAAAACTTTCAGAGTAAAAG
TATTTACATACATTGTTAAAATGCAATAACATTCAAATTTAATTAAGGCATAGAATTAATATTT
GCACACAGAGAGCCTACTGTAGAGGACAGTGGCAAAGTGTTCACAAACACACGTGTTTAAATGA
TCCTCTACTGCCGTGTTGAGCCATAAAAGCCAAGGGGAAAAGTTTTAAGTCAGAAGTAGAAAAA
TAGACTTCATTTTGTCTTTTTTGATACCTTCTTAAGTATTTCTACTGACCATTTAGTGTATGTG
TATGTGTTAAGAATCAAAATTTTTATTACTCAGTGTACACCTGTGAAGTATTATTCTACTTTAA
ATATACTAATATTTTCTACAGAAACCACTAGTATCATTGAAGAAAATGTCACTATGATTTCATT
ATAGAGATCCTGATACGTTTTTTTTTCTTCTGGAGTTTAAACTAATGTCCTTTCCTTCCCCTGC
CCTCCTCTGCAGTCCTCTTTCTTCCTCTCCCATTGGGCATGTTTGTGTGATTCTGTGGGCTGAA
CACAGGAACTGTGCATGCTGGGTAAAGACTGTTACTGAGTAACTTCCTCACCATGGGGCTTCAG
TTTTATTGCTAATGGTGACAGTTTACATTCCCGAGTGTTAATTTGGTAAAAGGAAGTGACTTTA
AAAGAAGACCAACTTCAAAGCCAAGAGAGATAGACATAATTGAATTTTTCAATCAGTATTAGTA
GAATGGTAGACATTCTGAATTTCTATGTGTGTAGTTGAAAAGAAACTCAGTTTAAAAGTCATTT
TCTACCTCCAATAGTCTTCAAGCATCCAGAGCAACAGACATCTTTTACCTAGCTCTAGTTTCCA
AGGGGGACAACTAAACCACCCAATGGATTTCTTTAAAGGCGGATATTGTCTCATTAAACAGTCA
CACTGATGTTGGATAGTGTCACGGGCCTTGCAAAGGTGTATTTAGGATGTCACAATGATGTGGA
ATTCAATGAATATTTATTAAGAAGGTAAAGAGGTAAATACCCCCTCTTTCTGGAACTAATATTC
AATACAGGGGAACTAGTAGGAATCACAGACAATTAGAAAGCGTAAAACAGGATGTCATCCTCTT
AAGCTGTGCAGTTAGGTGGTTGCTACATTAGTAATAATCTGATTCAGAAGCTTGCACATTAATT
AGAATTAATTCTCCCACTGTCTTTTAGGGATGGTGATAGAACTCAATGACAAAGCACCTGCCTA
GCATTTAGGCAGTCCTGTTCCGACCCAAGCAGCATGAAGGAATTACATGTATCTCTCATGTGCA
TATGATGTATGATCACACTCACCTGTGTCACCTGTGTACACACCTGGGGCAAATGGAGGAACTG
TATCTAATTCAAGGCAAACTACCGGAGCTCCATGTACGGTTCCTATAACTTTTCTATTATTTTG
TCATTTTAGCTAAATAAAAACATTATCAAAAATTA

hide sequence

RefSeq Acc Id:

XM_017591011 ⟹ XP_017446500

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	167,418,615 - 167,481,222 (-)	NCBI
Rnor_6.0	2	181,045,694 - 181,103,321 (-)	NCBI

Sequence:

show sequence

GTATTAACAGCATATAGGGCTGAGTGTAGTGAACCAAATAGAAGCAAGACCTTACACAAAAGAA
ATAATATTTCTGTGACCACAAAATTACCTTCGAACAGAGTAGATTAGCCTCAAAGCTAAAAGCC
AGGCCACCAAAGCCAAGGGAGGAGAGAAAAACCTCCCCACCACGGTTTGAGTTTCAAATTAAGG
AAGCTACAGTTGGTCTGCACCAGCTAGTACGAGAGAAAAGGTTTTTGTTTTTAACGTGCCAACT
TTTCCTAGAGTCTCTCCTTTGTTTTCTCTTCCTTGTCCCCTTCCCTGCTGTGTGTGTGTCTGGC
TTTGGTGGTTTGGAGGACAGCGATTGGGCGGGGAGCAGGACTCCGTTCTCAGGAGCTGAGCCTG
GGAGGAGTGGGAGGGACTCGGAGCAGCGGGGTTCTCACACACAGCCTTCCAGGCGGTCCTTCTC
CAGTGCCTGCCAGCTCGACCCCAAGGCGAAGAGCAGCAGTGCTCAGCCCGGGGAGTCCTCGAAG
CGAAGACACCTGCGCCCGGATGCCCCTGGCCTCCCGTGACCGCATCATGGTGGGTTTGCTCAGC
TGCTTGCTTTTCTACTGTTCGGGGACTGGAGAAGGGGGTAAGGCATGCATGGCACGGAGACGTG
GAAAGAGGTCCTGTGTGGTAGAGAAGAGACAGGCAAGAATTCTTTGGGTCATGGCAGGGAAAAA
CAAAGGCGAGAAGTGGCTGTTTGCAGCATGGTGGGAACCGGCTCTGGGAATGTTCCGTGGGTTC
AGCCGCGCCCCTGGCTCTGGTTGACCAGGGTGTGCGCGGCGTGGCCTTGACTGCCCTGGGTGAA
TCCGCTCCGGACCGACAGGTGCGACTCCAGCGTCACCTCTCGGTCCATGCCAGCGCCGCCGCCC
TTCCTCTGTGATCCAGTGGGGTTGTTCTCTGCGGGGTGTTCTTGGCAGCTCCAGGAGGTCGGGA
ACCGCTGTCCCCAGGTCTGGAAGCCTCTGAATGCTGGGCCACTCGTGTCTTTGAGTCAGTAGAA
GCAGATCTTCATCAGTCCACATCAACACCGGCTAATAAGGAGGAAACCACTGCCAAGCTCCAGG
AACACCATGTTCTGCAGGAAGTTCAAAGATCTCAAGATCACGGGGGAGTGTCCTTTCTCCTTAC
TGGCTCCTGGTCAGGTTCCTACGGAGCCAATAGAGGAGGTGGCCGGAGTCTCTGAGAGCTGCCA
GGCCACTCTGCCCACCTGCCAGGAGTTTGCTGAGAATGCAGAAGGGAGTCACCCCCAAAGAAAG
ACAAGCCGCAACAGAGTCTACCTACACACCCTGGCAGAGAGTATTGGCAAGCTCATTTTCCCAG
AGTTTGAGAGACTGAACCTTGCACTTCAGAGAACATTGGCAAAGCACAAAATAAAGGAAAACAG
GAATTCTTCAGAAAAAGAAGACCTTGAAAGAATAATTGCAGAAGAAGCAATTGCGGCAGGTGTC
CCAGTGGAGGCGCTCAAAGACTCTCTGGGTGAGGAACTGTTCAAGATCTGTTATGAGGAAGATG
AGCACATCCTGGGCGTGGTTGGCGGCACCCTGAAGGACTTTCTCAACAGCTTCAGCACGCTCCT
GAAGCAGAGCAGCCACTGCCAGGAGGCGGAGAGGCGGGGGCGACTGGAAGATGCCTCCATCTTG
TGCCTGGACAAGGACCAGGACTTTCTAAATGTTTACTACTTCTTCCCGAAGAGAACCACAGCCC
TGCTTCTCCCCGGTATCATTAAAGCGGCTGCTCGCATACTGTACGAAAGCCACGTGGAGGTGTC
CCTGATGCCTCCCTGCTTCCGAAGTGAGTGTACCGAATTCGTGAACCAGCCCTATTTGCTCTAC
TCGGTCCACGTGAAGAGCACCAAGCCTTCTCTGTCCCCAGGCAAACCCCAGTCCTCGCTAGTGA
TCCCTACTTCGCTCTTCTGCAAAACTTTCCCATTCCACTTCATGCTGGACCGTGACCTGGCCAT
TCTGCAGCTGGGTAATGGCATCAGAAGGCTGGTGAACAAGAGGGACTTCCAAGGGAAGCCCAAC
TTTGAAGAGTTCTTTGAAATTCTAACTCCCAAAATCAACCAGACATTTAGCGGCATCATGACAA
TGTTGAATATGCAGTTTGTCATACGGGTGAGGAGATGGGATAACTTAGTGAAGAAATCTTCAAG
GGTTATGGACCTCAAAGGTCAAATGATCTACATCGTTGAATCCAGTGCCATCTTGTTCTTAGGG
TCGCCGTGTGTGGACAGATTGGAAGATTTCACAGGACGGGGTCTCTATCTGTCTGACATCCCGA
TTCATAATGCCCTGAGGGATGTTGTCTTGATAGGGGAACAGGCACGGGCTCAAGATGGCCTCAA
GAAGAGGTTGGGAAAGCTGAAGGCAACCTTGGAGCATGCCCACCAAGCCCTGGAGGAGGAGAAG
AAGAAGACGGTAGATCTCCTGTGTTCTATCTTTCCCTCTGAGGTTGCTCAGCAGCTCTGGCAAG
GACAAATTGTGCAAGCCAAGAAGTTCAATGAGGTCACCATGCTCTTCTCAGATATCGTAGGGTT
CACTGCCATCTGCTCTCAGTGTTCACCTCTGCAGGTCATCACCATGCTCAACGCTCTCTATACT
CGCTTTGACCAACAGTGTGGAGAGCTGGATGTCTACAAGGTGGAGACCATCGGAGATGCATATT
GTGTGGCAGGGGGATTGCACAGAGAGAGTGACACACATGCTGTCCAGATAGCACTGATGGCCCT
GAAGATGATGGAGCTCTCCAATGAGGTCATGTCTCCCCACGGAGAACCTATCAAGATGCGAATC
GGACTGCATTCTGGGTCAGTGTTTGCTGGAGTTGTTGGAGTGAAGATGCCCCGATATTGCCTGT
TTGGAAACAATGTCACTCTGGCTAACAAATTTGAGTCCTGCAGTGTGCCTCGGAAAATCAATGT
CAGCCCCACGACATACAGGTTACTCAAAGACTGTCCTGGCTTTGTGTTCACCCCGAGATCGAGG
GAGGAGCTTCCACCAAACTTCCCTAGTGACATTCCTGGAATCTGTCACTTTCTGGATGCTTATC
AACATCAAGGACCTAATTCTAAACCATGGTTCCAGCAGAAAGATGCAGAAGATGGAAACGCTAA
CTTCTTAGGCAAAGCATCAGGGGTAGATTAGTGAGCCGCATGTTTCTGTGTTTGATGCCTTTGA
GGGTGCGCAGAATCTCTGAAATGACTTTAGGATTGCAGAAGATAAAAAACTGTGTTAAAATTGC
AGGGGTGAAACCCAGTTTCCTCTGTTTCCCATTTAAGATGGAAAAAAAAAAGTGTTCAATGCTT
CAGCGCTTTCAACCTTCTTCTCTATTTAAGAAACAAACCTCAAAAGTGACTTGTGACTTTTGGG
GACATAGCTTTGTTCTAGAGCAGTCACTACCTGCACTCGAAATCCAACACAGTGTACATATTCC
AGACAATTGTAGTCAAGTTTAAGTGTCAAAGTAATGTACTCACCTGTGGCCTGTGACCAGTGCA
AACTGTGGTTATTACAGTGTGTCTGTGGTAGTGTTGCCTGTAAATCTCTGAATAGAAATGACAG
TGTTTAATTCTGCAAGAGCTTCCAGCCTCTTGACTCTACATTCAATTAGGTTTCCTTATTCTAT
CCTGGCGTATGTAACACAATAGGCCAGCGCCTTCTTCCCAGCTACATCTTTGTGCCTATGTACG
TGTTTTCCTTTCCTTTCCTTTCCTTTCCTTTTTTTTTTTTAAGAAAATAAGCAATTAGACATAG
GATAAAATGTGATATAAAGTAGTTCAGTAAGTGTCAAAGAATATTTTCATGTTTTGTCATTAAA
GATATTATCTATAGCACAATATATAATACAACAAATACTTTTCATTTTGATCCTATCTGTGATA
AAACATTTTAATTAATAGTAACAATGTACTTCCTACTAATCCATGTAAAATTTACTAATAGCAA
AACTTTCAGAGTAAAAGTATTTACATACATTGTTAAAATGCAATAACATTCAAATTTAATTAAG
GCATAGAATTAATATTTGCACACAGAGAGCCTACTGTAGAGGACAGTGGCAAAGTGTTCACAAA
CACACGTGTTTAAATGATCCTCTACTGCCGTGTTGAGCCATAAAAGCCAAGGGGAAAAGTTTTA
AGTCAGAAGTAGAAAAATAGACTTCATTTTGTCTTTTTTGATACCTTCTTAAGTATTTCTACTG
ACCATTTAGTGTATGTGTATGTGTTAAGAATCAAAATTTTTATTACTCAGTGTACACCTGTGAA
GTATTATTCTACTTTAAATATACTAATATTTTCTACAGAAACCACTAGTATCATTGAAGAAAAT
GTCACTATGATTTCATTATAGAGATCCTGATACGTTTTTTTTTCTTCTGGAGTTTAAACTAATG
TCCTTTCCTTCCCCTGCCCTCCTCTGCAGTCCTCTTTCTTCCTCTCCCATTGGGCATGTTTGTG
TGATTCTGTGGGCTGAACACAGGAACTGTGCATGCTGGGTAAAGACTGTTACTGAGTAACTTCC
TCACCATGGGGCTTCAGTTTTATTGCTAATGGTGACAGTTTACATTCCCGAGTGTTAATTTGGT
AAAAGGAAGTGACTTTAAAAGAAGACCAACTTCAAAGCCAAGAGAGATAGACATAATTGAATTT
TTCAATCAGTATTAGTAGAATGGTAGACATTCTGAATTTCTATGTGTGTAGTTGAAAAGAAACT
CAGTTTAAAAGTCATTTTCTACCTCCAATAGTCTTCAAGCATCCAGAGCAACAGACATCTTTTA
CCTAGCTCTAGTTTCCAAGGGGGACAACTAAACCACCCAATGGATTTCTTTAAAGGCGGATATT
GTCTCATTAAACAGTCACACTGATGTTGGATAGTGTCACGGGCCTTGCAAAGGTGTATTTAGGA
TGTCACAATGATGTGGAATTCAATGAATATTTATTAAGAAGGTAAAGAGGTAAATACCCCCTCT
TTCTGGAACTAATATTCAATACAGGGGAACTAGTAGGAATCACAGACAATTAGAAAGCGTAAAA
CAGGATGTCATCCTCTTAAGCTGTGCAGTTAGGTGGTTGCTACATTAGTAATAATCTGATTCAG
AAGCTTGCACATTAATTAGAATTAATTCTCCCACTGTCTTTTAGGGATGGTGATAGAACTCAAT
GACAAAGCACCTGCCTAGCATTTAGGCAGTCCTGTTCCGACCCAAGCAGCATGAAGGAATTACA
TGTATCTCTCATGTGCATATGATGTATGATCACACTCACCTGTGTCACCTGTGTACACACCTGG
GGCAAATGGAGGAACTGTATCTAATTCAAGGCAAACTACCGGAGCTCCATGTACGGTTCCTATA
ACTTTTCTATTATTTTGTCATTTTAGCTAAATAAAAACATTATCAAAAATTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_058786	(Get FASTA)	NCBI Sequence Viewer
	XP_006232580	(Get FASTA)	NCBI Sequence Viewer
	XP_008759329	(Get FASTA)	NCBI Sequence Viewer
	XP_017446500	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41206	(Get FASTA)	NCBI Sequence Viewer
	AAB17953	(Get FASTA)	NCBI Sequence Viewer
	AAH85746	(Get FASTA)	NCBI Sequence Viewer
	BAC24016	(Get FASTA)	NCBI Sequence Viewer
	EDM00849	(Get FASTA)	NCBI Sequence Viewer
	P19686	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_058786 ⟸ NM_017090

- UniProtKB:

Q5U330 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFCRKFKDLKITGECPFSLLAPGQVPTEPIEEVAGVSESCQATLPTCQEFAENAEGSHPQRKTS
RNRVYLHTLAESIGKLIFPEFERLNLALQRTLAKHKIKENRNSSEKEDLERIIAEEAIAAGVPV
EALKDSLGEELFKICYEEDEHILGVVGGTLKDFLNSFSTLLKQSSHCQEAERRGRLEDASILCL
DKDQDFLNVYYFFPKRTTALLLPGIIKAAARILYESHVEVSLMPPCFRSECTEFVNQPYLLYSV
HVKSTKPSLSPGKPQSSLVIPTSLFCKTFPFHFMLDRDLAILQLGNGIRRLVNKRDFQGKPNFE
EFFEILTPKINQTFSGIMTMLNMQFVIRVRRWDNLVKKSSRVMDLKGQMIYIVESSAILFLGSP
CVDRLEDFTGRGLYLSDIPIHNALRDVVLIGEQARAQDGLKKRLGKLKATLEHAHQALEEEKKK
TVDLLCSIFPSEVAQQLWQGQIVQAKKFNEVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRF
DQQCGELDVYKVETIGDAYCVAGGLHRESDTHAVQIALMALKMMELSNEVMSPHGEPIKMRIGL
HSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREE
LPPNFPSDIPGICHFLDAYQHQGPNSKPWFQQKDAEDGNANFLGKASGVD

hide sequence

RefSeq Acc Id:	XP_006232580 ⟸ XM_006232518
- Peptide Label:	isoform X1
- UniProtKB:	Q5U330 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFCRKFKDLKITGECPFSLLAPGQVPTEPIEEVAGVSESCQATLPTCQEFAENAEGSHPQRKTS RNRVYLHTLAESIGKLIFPEFERLNLALQRTLAKHKIKENRNSSEKEDLERIIAEEAIAAGVPV EALKDSLGEELFKICYEEDEHILGVVGGTLKDFLNSFSTLLKQSSHCQEAERRGRLEDASILCL DKDQDFLNVYYFFPKRTTALLLPGIIKAAARILYESHVEVSLMPPCFRSECTEFVNQPYLLYSV HVKSTKPSLSPGKPQSSLVIPTSLFCKTFPFHFMLDRDLAILQLGNGIRRLVNKRDFQGKPNFE EFFEILTPKINQTFSGIMTMLNMQFVIRVRRWDNLVKKSSRVMDLKGQMIYIVESSAILFLGSP CVDRLEDFTGRGLYLSDIPIHNALRDVVLIGEQARAQDGLKKRLGKLKATLEHAHQALEEEKKK TVDLLCSIFPSEVAQQLWQGQIVQAKKFNEVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRF DQQCGELDVYKVETIGDAYCVAGGLHRESDTHAVQIALMALKMMELSNEVMSPHGEPIKMRIGL HSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREE LPPNFPSDIPGICHFLDAYQHQGPNSKPWFQQKDAEDGNANFLGKASGVD hide sequence

RefSeq Acc Id:	XP_008759329 ⟸ XM_008761107
- Peptide Label:	isoform X1
- UniProtKB:	Q5U330 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFCRKFKDLKITGECPFSLLAPGQVPTEPIEEVAGVSESCQATLPTCQEFAENAEGSHPQRKTS RNRVYLHTLAESIGKLIFPEFERLNLALQRTLAKHKIKENRNSSEKEDLERIIAEEAIAAGVPV EALKDSLGEELFKICYEEDEHILGVVGGTLKDFLNSFSTLLKQSSHCQEAERRGRLEDASILCL DKDQDFLNVYYFFPKRTTALLLPGIIKAAARILYESHVEVSLMPPCFRSECTEFVNQPYLLYSV HVKSTKPSLSPGKPQSSLVIPTSLFCKTFPFHFMLDRDLAILQLGNGIRRLVNKRDFQGKPNFE EFFEILTPKINQTFSGIMTMLNMQFVIRVRRWDNLVKKSSRVMDLKGQMIYIVESSAILFLGSP CVDRLEDFTGRGLYLSDIPIHNALRDVVLIGEQARAQDGLKKRLGKLKATLEHAHQALEEEKKK TVDLLCSIFPSEVAQQLWQGQIVQAKKFNEVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRF DQQCGELDVYKVETIGDAYCVAGGLHRESDTHAVQIALMALKMMELSNEVMSPHGEPIKMRIGL HSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREE LPPNFPSDIPGICHFLDAYQHQGPNSKPWFQQKDAEDGNANFLGKASGVD hide sequence

RefSeq Acc Id:	XP_017446500 ⟸ XM_017591011
- Peptide Label:	isoform X1
- UniProtKB:	Q5U330 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFCRKFKDLKITGECPFSLLAPGQVPTEPIEEVAGVSESCQATLPTCQEFAENAEGSHPQRKTS RNRVYLHTLAESIGKLIFPEFERLNLALQRTLAKHKIKENRNSSEKEDLERIIAEEAIAAGVPV EALKDSLGEELFKICYEEDEHILGVVGGTLKDFLNSFSTLLKQSSHCQEAERRGRLEDASILCL DKDQDFLNVYYFFPKRTTALLLPGIIKAAARILYESHVEVSLMPPCFRSECTEFVNQPYLLYSV HVKSTKPSLSPGKPQSSLVIPTSLFCKTFPFHFMLDRDLAILQLGNGIRRLVNKRDFQGKPNFE EFFEILTPKINQTFSGIMTMLNMQFVIRVRRWDNLVKKSSRVMDLKGQMIYIVESSAILFLGSP CVDRLEDFTGRGLYLSDIPIHNALRDVVLIGEQARAQDGLKKRLGKLKATLEHAHQALEEEKKK TVDLLCSIFPSEVAQQLWQGQIVQAKKFNEVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRF DQQCGELDVYKVETIGDAYCVAGGLHRESDTHAVQIALMALKMMELSNEVMSPHGEPIKMRIGL HSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREE LPPNFPSDIPGICHFLDAYQHQGPNSKPWFQQKDAEDGNANFLGKASGVD hide sequence

RefSeq Acc Id:

ENSRNOP00000017190 ⟸ ENSRNOT00000017190

Protein Domains

Guanylate cyclase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P19686-F1-model_v2	AlphaFold	P19686	1-690	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691392

Promoter ID:

EPDNEW_R1917

Type:

multiple initiation site

Name:

Gucy1a3_1

Description:

guanylate cyclase 1 soluble subunit alpha 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	181,102,872 - 181,102,932	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68436	AgrOrtholog
BioCyc Gene	G2FUF-52683	BioCyc
Ensembl Genes	ENSRNOG00000012302	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000017190	ENTREZGENE
	ENSRNOP00000017190.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017190	ENTREZGENE
	ENSRNOT00000017190.5	UniProtKB/TrEMBL
Gene3D-CATH	3.30.450.260	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.70.1230	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.90.1520.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	6.10.250.780	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7190419	IMAGE-MGC_LOAD
InterPro	A/G_cyclase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	A/G_cyclase_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	H-NOX_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HNOB_dom_associated	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HNOB_dom_associated_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NO_sig/Golgi_transp_ligand-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide_cyclase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:497757	UniProtKB/TrEMBL
MGC_CLONE	MGC:93532	IMAGE-MGC_LOAD
NCBI Gene	497757	ENTREZGENE
PANTHER	GUANYLATE CYCLASE SOLUBLE SUBUNIT ALPHA-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Guanylate_cyc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HNOBA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gucy1a1	PhenoGen
PROSITE	GUANYLATE_CYCLASE_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GUANYLATE_CYCLASE_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CYCc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF111126	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF55073	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC230155
UniProt	GCYA1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q5U330	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Gucy1a3	guanylate cyclase 1, soluble, alpha 3			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_drugs	3-(5-Hydroxymethyl-2-furyl)-1-benzyl indazole (YC1) decreases expression	628495
gene_expression	expressed in lung and brain	61495
gene_expression	expressed in lung and brain	68258
gene_function	subunit of soluble guanylate cyclase, forms a heterodimer with Gucy1b3 that converts GTP to cGMP	61495
gene_function	intracellular nitric oxide receptor in vascular smooth muscle cells	628495
gene_physical_interaction	forms heterodimer with Gucy1b3	61495
gene_physical_interaction	forms heterodimer with Gucy1b3	68258
gene_process	may control salt-sensitive hypertension	61495
gene_process	activates cGMP-dependent protein kinase that induces vascular smooth muscle relaxation and prevents contractile agonist-elicited intracellular free Ca2+ mobilization, dephosphorylates myosin light chain kinase	628495
gene_process	hemoprotein mediating NO signaling by forming 3:5-cyclinc monophosphate (cGMP)	628495
gene_protein	76-81.5 kDa	628495
gene_regulation	protected mRNA-stabilizing protein HuR which binds to the 3-UTR; increased Gucy1a3 levels results in downregulation of HuR expression and autoregulation as a negative feedback response	628495
gene_regulation	mRNA and protein expression is decreased by beta-amyloid peptides in astroglial cells	1298937

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)