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Gene: Chd1l (chromodomain helicase DNA binding protein 1-like) Rattus norvegicus

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Symbol:

Chd1l

Name:

chromodomain helicase DNA binding protein 1-like

RGD ID:

1311935

Description:

Predicted to enable several functions, including ATP hydrolysis activity; nucleosome binding activity; and poly-ADP-D-ribose modification-dependent protein binding activity. Predicted to be involved in DNA repair and chromatin remodeling. Predicted to be located in nucleoplasm. Predicted to be active in nucleus and site of double-strand break. Orthologous to human CHD1L (chromodomain helicase DNA binding protein 1 like); INTERACTS WITH 17beta-estradiol; 2,4,6-trinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

chromodomain-helicase-DNA-binding protein 1-like; LOC310707

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	187,819,869 - 187,906,359 (-)	NCBI		GRCr8
mRatBN7.2	2	185,138,526 - 185,217,498 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	185,139,308 - 185,217,595 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	199,714,044 - 199,792,270 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	199,716,713 - 199,771,896 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	219,191,907 - 219,249,938 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	192,382,644 - 192,438,157 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	192,345,407 - 192,400,960 (-)	NCBI
Celera	2	177,632,171 - 177,710,093 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

CAKUT (ISO)

cataract 1 multiple types (ISO)

cataract 46 juvenile-onset (ISO)

chromosome 1q21.1 deletion syndrome (ISO)

chromosome 1q21.1 duplication syndrome (ISO)

Dwarfism (ISO)

gastrointestinal stromal tumor (ISO)

hereditary breast ovarian cancer syndrome (ISO)

Neurodevelopmental Disorders (ISO)

neutropenia (ISO)

parathyroid carcinoma (ISO)

schizophrenia (ISO)

substance-related disorder (ISO)

thrombocytopenia-absent radius syndrome (ISO)

urinary system disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-trinitrotoluene (EXP)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (ISO)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cyproconazole (ISO)

epoxiconazole (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

ivermectin (ISO)

L-methionine (ISO)

leflunomide (EXP)

methapyrilene (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

nickel sulfate (ISO)

ochratoxin A (EXP)

oxaliplatin (EXP)

oxycodone (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IBA,IEA,ISO)

DNA damage response (IBA,IEA,ISO)

DNA repair (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

site of DNA damage (ISO)

site of double-strand break (IEA,ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA,ISO)

ATP-dependent chromatin remodeler activity (IEA,ISO)

catalytic activity (IEA)

DNA helicase activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

histone reader activity (IEA,ISO)

hydrolase activity (IEA)

nucleosome binding (IEA,ISO)

nucleotide binding (IBA,IEA,ISO)

poly-ADP-D-ribose modification-dependent protein binding (IEA,ISO)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19661379

Genomics

Comparative Map Data

Chd1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	187,819,869 - 187,906,359 (-)	NCBI		GRCr8
mRatBN7.2	2	185,138,526 - 185,217,498 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	185,139,308 - 185,217,595 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	199,714,044 - 199,792,270 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	199,716,713 - 199,771,896 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	219,191,907 - 219,249,938 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	192,382,644 - 192,438,157 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	192,345,407 - 192,400,960 (-)	NCBI
Celera	2	177,632,171 - 177,710,093 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

CHD1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	147,172,747 - 147,295,762 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	147,242,654 - 147,295,765 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	146,644,326 - 146,767,443 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	145,180,915 - 145,234,067 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	143,939,149 - 143,992,257	NCBI
Celera	1	122,216,559 - 122,269,716 (-)	NCBI		Celera
Cytogenetic Map	1	q21.1	NCBI
HuRef	1	120,126,695 - 120,180,299 (+)	NCBI		HuRef
CHM1_1	1	148,610,767 - 148,663,892 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	147,512,572 - 147,635,662 (-)	NCBI		T2T-CHM13v2.0

Chd1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	97,468,056 - 97,517,538 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	97,468,058 - 97,517,519 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	97,560,740 - 97,610,222 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	97,560,742 - 97,610,203 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	97,364,671 - 97,414,113 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	97,646,153 - 97,695,595 (-)	NCBI		MGSCv36	mm8
Celera	3	98,960,418 - 99,009,880 (-)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI
cM Map	3	42.17	NCBI

Chd1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955568	1,132,857 - 1,189,024 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955568	1,132,594 - 1,189,176 (-)	NCBI	ChiLan1.0	ChiLan1.0

CHD1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	102,430,969 - 102,555,824 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	102,019,317 - 102,144,906 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	122,595,246 - 122,720,788 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	112,809,272 - 112,862,234 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	112,809,274 - 112,862,219 (-)	Ensembl	panpan1.1		panPan2

CHD1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	57,725,823 - 57,806,065 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	57,725,640 - 57,806,048 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	57,270,007 - 57,274,456 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	58,725,649 - 58,814,453 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	58,725,642 - 58,814,454 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	57,618,145 - 57,700,588 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	57,667,050 - 57,755,705 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	58,399,695 - 58,482,167 (+)	NCBI		UU_Cfam_GSD_1.0

Chd1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024412066	277,313 - 309,747 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937024	164,327 - 216,851 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937024	164,309 - 216,967 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHD1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	100,264,968 - 100,425,692 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	100,264,963 - 100,425,728 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	110,096,642 - 110,255,293 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHD1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666038	14,959,047 - 15,013,195 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chd1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	16,178,139 - 16,241,624 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	16,178,080 - 16,241,869 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Chd1l
650 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	31
Count of miRNA genes:	30
Interacting mature miRNAs:	30
Transcripts:	ENSRNOT00000043937
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
4889834	Pur24	Proteinuria QTL 24	5.8	0.014	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	184114274	202447032	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
7488929	Bp366	Blood pressure QTL 366		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	184974550	193094998	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	184165752	229165752	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Markers in Region

D2Rat353

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	187,877,530 - 187,877,757 (+)	Marker Load Pipeline
mRatBN7.2	2	185,188,754 - 185,188,985 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	199,763,437 - 199,763,663	NCBI	Rnor6.0
Rnor_5.0	2	219,241,383 - 219,241,609	UniSTS	Rnor5.0
RGSC_v3.4	2	192,429,653 - 192,429,880	RGD	RGSC3.4
RGSC_v3.4	2	192,429,654 - 192,429,880	UniSTS	RGSC3.4
RGSC_v3.1	2	192,392,407 - 192,392,634	RGD
Celera	2	177,681,279 - 177,681,491	UniSTS
SHRSP x BN Map	2	73.2498	UniSTS
SHRSP x BN Map	2	73.2498	RGD
Cytogenetic Map	2	q34	UniSTS

D9Mit122

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	X	68,320,928 - 68,321,026	NCBI	Rnor5.0
Rnor_5.0	X	65,760,087 - 65,760,185	NCBI	Rnor5.0
Rnor_5.0	2	219,200,997 - 219,201,091	NCBI	Rnor5.0
RGSC_v3.4	X	83,377,299 - 83,377,396	UniSTS	RGSC3.4
RGSC_v3.4	2	192,387,219 - 192,387,312	UniSTS	RGSC3.4
Celera	X	61,103,479 - 61,103,576	UniSTS
Celera	2	177,638,960 - 177,639,053	UniSTS
Cytogenetic Map	2	q34	UniSTS
Cytogenetic Map	X	q31	UniSTS

RH127498

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	185,142,011 - 185,142,204 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	199,716,593 - 199,716,785	NCBI	Rnor6.0
Rnor_5.0	2	219,196,393 - 219,196,585	UniSTS	Rnor5.0
RGSC_v3.4	2	192,382,786 - 192,382,978	UniSTS	RGSC3.4
Celera	2	177,634,720 - 177,634,912	UniSTS
RH 3.4 Map	2	1251.5	UniSTS
Cytogenetic Map	2	q34	UniSTS

AU048552

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	185,150,278 - 185,150,421 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	199,724,860 - 199,725,002	NCBI	Rnor6.0
Rnor_5.0	2	219,204,831 - 219,204,973	UniSTS	Rnor5.0
RGSC_v3.4	2	192,391,052 - 192,391,194	UniSTS	RGSC3.4
Celera	2	177,642,793 - 177,642,935	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010063611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_599888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000043937 ⟹ ENSRNOP00000048925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	185,141,859 - 185,217,595 (-)	Ensembl
Rnor_6.0 Ensembl	2	199,716,713 - 199,771,896 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099918 ⟹ ENSRNOP00000084164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	185,139,308 - 185,197,473 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115624 ⟹ ENSRNOP00000086360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	185,140,793 - 185,197,473 (-)	Ensembl

RefSeq Acc Id:

NM_001107704 ⟹ NP_001101174

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,830,642 - 187,885,998 (-)	NCBI

RefSeq Acc Id:

XM_008761350 ⟹ XP_008759572

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,829,004 - 187,886,083 (-)	NCBI
mRatBN7.2	2	185,140,221 - 185,197,316 (-)	NCBI
Rnor_6.0	2	199,714,044 - 199,772,535 (-)	NCBI

Sequence:

show sequence

CTCCTGCTCCCACCTCCCCAGCGCTAGGATTACAGGCGCTCATCCTCATGCCCAACTTACAGGG
CACCAGAGGCAAGCATCCTGCCAATTGAGCTTTGATATTTATTATTATTTATTGACACCTTCCT
GCTATAACTCACAAATTCTCTTGCCTTAGCCTCCCCAGTGCTGAGATTATAGGAATGTACACCA
GGTTCCTTTCTTTGAATGTGTTTTATCACTAACGTATCTTAGGAGATAAAGTTAATGCTATTTT
GGTGTTTTCAGTCATAAATGAGGAGAAAGGTTAGATAAATATAGGATTCATTGACCTTGTAGTA
CCAGTTTTTAGGCATACACATCTTAACTGAAAACATGGAAAGCTGCTCAGGAATCTGACCCAAA
GTTTAAAGGAGACAGATAAGAAATTAAGAGGGGAGCCTGCTAAGCTTTGAGGCTGCTGTTAGCT
ACCCACGGAACCCAAATTAGGAGTCAGAGCTTTTAGCAAAGGCAGCCTCTAAGCTCCAGTCGCA
AAAGCACACTTAGACCAGAGCCTTCCGCACCTTCATGCTTCTGCGGCGTGTGAATGCGCGCGAA
CTGTGCCCTCTGGCGGCGGCGCGCGGGAGCGAAGGCGCGGGGCCGTGGGCGGAGCCTTTCGGGA
TGGCGGGTGGCTCGCCGCGCTTCTTGCAGGCGCTGCGGGCCGGGGACCGACCCGAGCCAGTGCG
GACGCGGGTGCAGGAACAGGACTTACAGGAGTGGGGCTTGACTGGGATTCGTCTACGCTCTTAC
CAACTGGAGGGAGTCAACTGGCTAGTCCAGTGCTTCCATGGCCAGAATGGCTGCATCCTGGGAG
ACGAGATGGGCCTGGGGAAGACCTGCCAGACCATCGCTCTCCTCATTTACTTGGTGGGGAGACT
GAACGACGAAGGGCCGTTTCTGATCCTTTGTCCCTTGTCTGTTTTGAGCAACTGGAAAGAAGAG
ATGGAGAGATTTGCTCCAGGTCTTTCCTGTGTGACATACACAGGTGACAAGGAAGAGAGAGCCC
GCCGTCAGCAGGACCTAAGACAGGAGTCGGGTTTTCATGTGCTGCTGACGACCTATGAGATTTG
CCTGAAAGATGCCTCATTTCTAAAATCCTTCTCTTGGAGTGTCCTTGCTGTGGATGAAGCTCAC
AGATTGAAAAACCAGAGCTCCCTGCTGCATAGGACACTTTCAGAGTTCTCAGTGGTTTTCCGTC
TCCTGCTCACCGGAACTCCCATCCAGAACAGCCTCCAGGAGCTCTACTCTCTTCTCAGCGTCGT
GGAGCCTGATCTCTTCTGCAGAGAGCAGGTGGAAGATTTCGTTCAGTGTTACCAGGACATTGAG
AAAGAGTCCAAATCAGCCAGTGAGCTGCACAGACTCCTGCGGCCTTTCCTCCTGAGGCGAGTGA
AAGCTCAGGTGGCCACAGAGCTTCCCAAGAAGACAGAGGTGGTGATATACCATGGCATGTCAGC
ACTGCAGAAAAAGTACTACAAGGCCATCTTGATGAAAGACCTAGATGCATTTGAGAACGAGACG
GCAAAGAAAGTCAAACTCCAGAATGTCCTAACGCAGCTTCGGAAGTGTGTGGACCACCCATATC
TGTTTGATGGTGTGGAACCAGAGCCCTTTGAAGTTGGAGAGCACCTGATTGAGGCCAGTGGGAA
ACTTCACCTGCTGGACAGGCTGCTGGCATTTCTGTACTCTGGGGGCCACCGGGTTTTACTCTTC
TCCCAGATGACCCACATGTTGGATATTCTGCAAGACTATATGGATTACAGAGGGTACAGCTATG
AGCGTGTGGATGGCTCCGTGAGAGGAGAGGAGAGACACCTGGCCATTAAGAACTTTGGAAAACA
GCCCATCTTTGTTTTCCTCCTGAGCACCCGGGCAGGCGGAGTGGGCATGAACTTAACAGCAGCA
GATACCGTTATTTTTGTCGACAGTGATTTTAATCCTCAGAATGACTTGCAGGCGGCTGCCCGAG
CTCACCGGATCGGCCAGAACAAGTCTGTTAAAGTCATCCGGCTCATCGGCCGAGACACCGTGGA
AGAAATTGTGTATAGGAAGGCGGCCTCCAAACTGCAGCTTACCAACATGGTCATAGAAGGAGGC
CATTTCACCCTAGGAGCCCAGAAACCTGCAGCTGAGGCCGACTTACAGTTAAGTGAGATACTCA
AATTCGGCTTGGATAAGCTGCTGTCCTCTGAGGGGAGCTCCATGGATGAAATAGACCTGAAGTC
CATCCTGGGAGAAACCAAAGATGGCCAGTGGACCCCTGATGCTCTGCCCGCAGCAGCAGAAGGA
GAAAGCAGAGAACAAGAGGAAGGAAAAAACCACATGTACTTATTTGAAGGCAGAGACTATTCTA
AGGAGCCCAGTAAGGAAGACAGGAAGTCGTTTGAACAGCTGGTGAATCTTCAGAAAACTCTTCT
AGAGAAGACGAGTCATGGGGGCCGGTCCCTCCGGAATAAAGGCAGTGTTCTTATCCCAGGCCTT
GCAGAAGGGCCCATCAAAAGGAAGAAGATTCTAAGTCCAGAAGAGCTGGAGGACAGACAGAAGA
AAAGACAGGAAGCAGCAGCCAAGAGAAAGAAGCTAATGGAGGAGAAGAAGAAGGCTAAGGAGGA
GGCTGAACACAGGAAGAAGATGGCCTGGTGGGAATCCAACGGTTATCAGTCCTTCTGCCTGCCC
TCAGAGGACAGCGAGCTTGAGGACCTCGAGGACCTCGAGGATGGAGACGAGACTTCTGCCGAGC
TAGATTATGAAGATCTAGACTTGACCTCCATTAACTATGTTAGCGGTGACGTCACCCACCCCCA
GGCTGGCGAAGAGGACGCTGTCATTGTGCACTGTGTCGATGACTCTGGCCGCTGGGGCAGAGGT
GGCTTATTCACAGCTCTGGAAGCACGGTCCGCTGAACCAAGAAAAATATATGAGCTGGCTGGGA
AAATGAAAGATCTGAGTTTGGGCGATGTCCTTTTATTTCCCATCGATGATAAAGAGTCACGAGA
CAAGGGGCAAGACCTGTTGGCCTTGGTGGTGGCTCAGCACCGCGATCGTACCAATGTCCTGTCT
GGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATACTTTTAGCAGCAAAGAAGAAGA
AAGCAAGTGTTCATCTTCCACGAATTGGACATGCTACAAAGGGTTTTAACTGGTATGGTACTGA
AAGACTTATTCGGAAACACTTGGCTACCCGAGGCATCCCAACTTTCATATACTACTTTCCCAGA
AGTAAGGCTGCTGCCTGCCATTCACAGCCTGCATCCCCCACCTCAGCACCACTGGTTCCTTAGC
AACCAGCCCAGCATCAGACTGGTGCACGGAAGGGAGAGCTGAGTGAAGACAGGGTGGGGAGAAG
CTACTTCAGCCAACTCATGCCTTCAAAGTGAACACCAGAGCAGAGGCTGGCGACAGACTCGCCA
GCCTTCCGCACCAGCAGGACTCCCTGCCCTTCTTGACTCAGTATTGGGATCCTGAAGACAGGTG
GTTGGCCTGGAGACCTGCCAAGTGTGACTTTAGGAAACCCTGAGTATCCTTTCCTCCACTTGCA
AAGCCAGTGTAGTTTCAGTATGCCGCTCCTGGCTGGCACAGCGTGACCTGTGAGCATCCCTGGA
ACAGAGAACCACTGGAAGAGCAGTCTTGGAGGCCAGGCCATGTAAGCAGTGGTTCGCCACACCT
GTGTGAGCCTTGGCTTTCGACAGCTGTCTTCGAGCTGAGAGTGGACTCACACGAGATGCCCGTA
GTGCATGGGTGAAGAAAGTGCAGCCTATTACAGGAGTACGGCACTACTCAGCCATAGGGAAGAA
TGAAGTCGTATCATTTTCAGCAGAGTGGAGGGAACTGGAGATTACTGTAGGAAGTAAGCAGAAC
ACAAGAAGACACTGTTCTCTGTCGGGACCGAGGCTGCAGAACTCCAAGCTGTAAGTGGAATAAT
CATTACAGACAGGATATATGCGGCTGAATTGATCAGCGAGCCCTGTGTTCACGGTCATAAAAGC
ACACCAGGCCCGCTTAACGTCCGCTAACACATGCTGCAGTAAAAATAAGTACCATGTTAATCCC
ACGGATTTGAGGAGGAAGACCACCAACCCAAATTATGTCCCAATCAAATCAGCCCTGGGCCAGT
TTCCCAAACCTCCTTCATAGGGCAGATCTGCAGGGTCGGGGGTTTTGTAAGCAAGCACCTTCCG
CACAGATCCCCCAGGAGGTGGGTTTACAGATAAACTGCCAGGTCAAAGTAGCTCAGATTCCAGG
AATCAGAAACTTACATTTTACAGTAAAGAGAAACCTAACTGAGCTAGCATATCAAAATGTCTCC
TGATTACAAAACAGAGACAGACTGGTTCCTCATATGCCTTACAGGTATCTAATGGGCATATTGG
TGTATTAATTAGTTCCTTAGGAACCAAAGACTTTGAGAAAGATCTTTCCTTACTCCTTTTCCAC
ATCATATGAAACAATTTGGGGCACACAAATGTCACTTGAAATGGTATGTAAATTGCTAGCCTCC
AGTATGAGAGAAGCATTAAGCCTCTGCCATCACTGATAAATTGGAAATGGAGTGTATACATAAG
CATAAAACCTGAAAACAGAGAAGCTTGCCATTTTTTGTGATCCCCTGACTAGCAATAGCCACTT
AAAACTTCTCCCTATGTTTCACTAACATATCAGTGGCATTCAAGTACAGATTCATAGTCACGCT
AAACATAGCTGGCTAGCCAACCCAATGGAAGTCACAGTGGGAAACCGTGCTAGTTACAGGTACA
GCTTGGCTGAAATCTCATTCCAGGAAGAAAAGGCTGGCTAAAGCTAAGGAAAGTAAGCTGCCAT
CCCTCTGTCTTTAAAGGTCTATACATATAAGTTGTCTTTCCCATTAAAACTTTTTAATTGCAAA
ATTAAAAAAGTTAATTTCTCATTTCCTTTCCAGTAATACCTCAATTTAAGTGTTCCTATATTCA
GTTTTCATTTCATACACATAAACGCACACACAAAGACATACATACATGTGTACTACGTAGACAC
ACACTCCCATATGCACACCCCACATACTCTTGTGTACACATGCTTGAATACATTCACCAGCACC
CACATGTATGCACTCGCACACTCCTCATGCACACAGGTTTTACTCTTGCTTCTCCAACAGAGAA
TCAGTAGAAAGGATACCAGTAACTTCTGAGTCATGAAATCCATTGTTTATTTTTTGAGTTTCAC
CATGACCTCCCAGTAGAGTTCATTCCTGTGATTATTTCTTAACCCATGGAACCACTCTTGTCTT
AGCTTCTGTGATAAGATACTTTTCTGTCACAAAATAATGTCAGTTTATCTTTTCTCATGTTTAC
TTTTTAATTTTTTTTTTTTACCCCAGTGTATTAGCTCCTGGGAGACGCTGTGATCAGATGTCAC
AGGTTAGATGGTTTAAACAGCCAGTCACAAGTCCAGGATGAAGGCATTGGCAGATTGGCTACAG
CATGTGTTCCTGGTGTGCCTGTTCAGTGGAATTATATCTGAGGATTTCTCAAACCTAAAGACAT
CCAAGCAGGATGAATCCAGACCCACAAATAGACATGGCCAGATAAGACCCTGCATGACATGTTG
CATTCAAAATGTCAAAAATAAGCAGATAAACCCTACAGAGGCTATCAGAGGACAATGTTCCTCA
TAAGGAAA

hide sequence

RefSeq Acc Id:

XM_008761353 ⟹ XP_008759575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,829,004 - 187,886,083 (-)	NCBI
mRatBN7.2	2	185,140,221 - 185,197,316 (-)	NCBI
Rnor_6.0	2	199,714,044 - 199,772,536 (-)	NCBI

Sequence:

show sequence

TCTCCTGCTCCCACCTCCCCAGCGCTAGGATTACAGGCGCTCATCCTCATGCCCAACTTACAGG
GCACCAGAGGCAAGCATCCTGCCAATTGAGCTTTGATATTTATTATTATTTATTGACACCTTCC
TGCTATAACTCACAAATTCTCTTGCCTTAGCCTCCCCAGTGCTGAGATTATAGGAATGTACACC
AGGTTCCTTTCTTTGAATGTGTTTTATCACTAACGTATCTTAGGAGATAAAGTTAATGCTATTT
TGGTGTTTTCAGTCATAAATGAGGAGAAAGGTTAGATAAATATAGGATTCATTGACCTTGTAGT
ACCAGTTTTTAGGCATACACATCTTAACTGAAAACATGGAAAGCTGCTCAGGAATCTGACCCAA
AGTTTAAAGGAGACAGATAAGAAATTAAGAGGGGAGCCTGCTAAGCTTTGAGGCTGCTGTTAGC
TACCCACGGAACCCAAATTAGGAGTCAGAGCTTTTAGCAAAGGCAGCCTCTAAGCTCCAGTCGC
AAAAGCACACTTAGACCAGAGCCTTCCGCACCTTCATGCTTCTGCGGCGTGTGAATGCGCGCGA
ACTGTGCCCTCTGGCGGCGGCGCGCGGGAGCGAAGGCGCGGGGCCGTGGGCGGAGCCTTTCGGG
ATGGCGGGTGGCTCGCCGCGCTTCTTGCAGGCGCTGCGGGCCGGGGACCGACCCGAGCCAGTGC
GGACGCGGGTGCAGGAACAGGACTTACAGGAGTGGGGCTTGACTGGGATTCGTCTACGCTCTTA
CCAACTGGAGGGAGTCAACTGGCTAGTCCAGTGCTTCCATGGCCAGAATGGCTGCATCCTGGGA
GACGAGATGGGCCTGGGGAAGACCTGCCAGACCATCGCTCTCCTCATTTACTTGGTGGGGAGAC
TGAACGACGAAGGGCCGTTTCTGATCCTTTGTCCCTTGTCTGTTTTGAGCAACTGGAAAGAAGA
GATGGAGAGATTTGCTCCAGGTCTTTCCTGTGTGACATACACAGGTGACAAGGAAGAGAGAGCC
CGCCGTCAGCAGGACCTAAGACAGGAGTCGGGTTTTCATGTGCTGCTGACGACCTATGAGATTT
GCCTGAAAGATGCCTCATTTCTAAAATCCTTCTCTTGGAGTGTCCTTGCTGTGGATGAAGCTCA
CAGATTGAAAAACCAGAGCTCCCTGCTGCATAGGACACTTTCAGAGTTCTCAGTGGTTTTCCGT
CTCCTGCTCACCGGAACTCCCATCCAGAACAGCCTCCAGGAGCTCTACTCTCTTCTCAGCGTCG
TGGAGCCTGATCTCTTCTGCAGAGAGCAGGTGGAAGATTTCGTTCAGTGTTACCAGGACATTGA
GAAAGAGTCCAAATCAGCCAGTGAGCTGCACAGACTCCTGCGGCCTTTCCTCCTGAGGCGAGTG
AAAGCTCAGGTGGCCACAGAGCTTCCCAAGAAGACAGAGGTGGTGATATACCATGGCATGTCAG
CACTGCAGAAAAAGTACTACAAGGCCATCTTGATGAAAGACCTAGATGCATTTGAGAACGAGAC
GGCAAAGAAAGTCAAACTCCAGAATGTCCTAACGCAGCTTCGGAAGTGTGTGGACCACCCATAT
CTGTTTGATGGTGTGGAACCAGAGCCCTTTGAAGTTGGAGAGCACCTGATTGAGGCCAGTGGGA
AACTTCACCTGCTGGACAGGCTGCTGGCATTTCTGTACTCTGGGGGCCACCGGGTTTTACTCTT
CTCCCAGATGACCCACATGTTGGATATTCTGCAAGACTATATGGATTACAGAGGGTACAGCTAT
GAGCGTGTGGATGGCTCCGTGAGAGGAGAGGAGAGACACCTGGCCATTAAGAACTTTGGAAAAC
AGCCCATCTTTGTTTTCCTCCTGAGCACCCGGGCAGGCGGAGTGGGCATGAACTTAACAGCAGC
AGATACCGTTATTTTTGTCGACAGTGATTTTAATCCTCAGAATGACTTGCAGGCGGCTGCCCGA
GCTCACCGGATCGGCCAGAACAAGTCTGTTAAAGTCATCCGGCTCATCGGCCGAGACACCGTGG
AAGAAATTGTGTATAGGAAGGCGGCCTCCAAACTGCAGCTTACCAACATGGTCATAGAAGGAGG
CCATTTCACCCTAGGAGCCCAGAAACCTGCAGCTGAGGCCGACTTACAGTTAAGTGAGATACTC
AAATTCGGCTTGGATAAGCTGCTGTCCTCTGAGGGGAGCTCCATGGATGAAATAGACCTGAAGT
CCATCCTGGGAGAAACCAAAGATGGCCAGTGGACCCCTGATGCTCTGCCCGCAGCAGCAGAAGG
AGAAAGCAGAGAACAAGAGGAAGGAAAAAACCACATGTACTTATTTGAAGGCAGAGACTATTCT
AAGGAGCCCAGTAAGGAAGACAGGAAGTCGTTTGAACAGCTGGTGAATCTTCAGAAAACTCTTC
TAGAGAAGACGAGTCATGGGGGCCGGTCCCTCCGGAATAAAGGCAGTGTTCTTATCCCAGGCCT
TGCAGAAGGGCCCATCAAAAGGAAGAAGATTCTAAGTCCAGAAGAGCTGGAGGACAGACAGAAG
AAAAGACAGGAAGCAGCAGCCAAGAGAAAGAAGCTAATGGAGGAGAAGAAGAAGGCTAAGGAGG
AGGCTGAACACAGGAAGAAGATGGCCTGGTGGGAATCCAACGGTTATCAGTCCTTCTGCCTGCC
CTCAGAGGACAGCGAGCTTGAGGACCTCGAGGACCTCGAGGATGGAGACGAGACTTCTGCCGAG
CTAGATTATGAAGATCTAGACTTGACCTCCATTAACTATGTTAGCGGTGACGTCACCCACCCCC
AGGCTGGCGAAGAGGACGCTGTCATTGTGCACTGTGTCGATGACTCTGGCCGCTGGGGCAGAGG
TGGCTTATTCACAGCTCTGGAAGCACGGTCCGCTGAACCAAGAAAAATATATGAGCTGGCTGGG
AAAATGAAAGATCTGAGTTTGGGCGATGTCCTTTTATTTCCCATCGATGATAAAGAGTCACGAG
ACAAGGGGCAAGACCTGTTGGCCTTGGTGGTGGCTCAGCACCGCGATCGTACCAATGTCCTGTC
TGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATACTTTTAGCAGCAAAGAAGAAG
AAAGACTGGTGCACGGAAGGGAGAGCTGAGTGAAGACAGGGTGGGGAGAAGCTACTTCAGCCAA
CTCATGCCTTCAAAGTGAACACCAGAGCAGAGGCTGGCGACAGACTCGCCAGCCTTCCGCACCA
GCAGGACTCCCTGCCCTTCTTGACTCAGTATTGGGATCCTGAAGACAGGTGGTTGGCCTGGAGA
CCTGCCAAGTGTGACTTTAGGAAACCCTGAGTATCCTTTCCTCCACTTGCAAAGCCAGTGTAGT
TTCAGTATGCCGCTCCTGGCTGGCACAGCGTGACCTGTGAGCATCCCTGGAACAGAGAACCACT
GGAAGAGCAGTCTTGGAGGCCAGGCCATGTAAGCAGTGGTTCGCCACACCTGTGTGAGCCTTGG
CTTTCGACAGCTGTCTTCGAGCTGAGAGTGGACTCACACGAGATGCCCGTAGTGCATGGGTGAA
GAAAGTGCAGCCTATTACAGGAGTACGGCACTACTCAGCCATAGGGAAGAATGAAGTCGTATCA
TTTTCAGCAGAGTGGAGGGAACTGGAGATTACTGTAGGAAGTAAGCAGAACACAAGAAGACACT
GTTCTCTGTCGGGACCGAGGCTGCAGAACTCCAAGCTGTAAGTGGAATAATCATTACAGACAGG
ATATATGCGGCTGAATTGATCAGCGAGCCCTGTGTTCACGGTCATAAAAGCACACCAGGCCCGC
TTAACGTCCGCTAACACATGCTGCAGTAAAAATAAGTACCATGTTAATCCCACGGATTTGAGGA
GGAAGACCACCAACCCAAATTATGTCCCAATCAAATCAGCCCTGGGCCAGTTTCCCAAACCTCC
TTCATAGGGCAGATCTGCAGGGTCGGGGGTTTTGTAAGCAAGCACCTTCCGCACAGATCCCCCA
GGAGGTGGGTTTACAGATAAACTGCCAGGTCAAAGTAGCTCAGATTCCAGGAATCAGAAACTTA
CATTTTACAGTAAAGAGAAACCTAACTGAGCTAGCATATCAAAATGTCTCCTGATTACAAAACA
GAGACAGACTGGTTCCTCATATGCCTTACAGGTATCTAATGGGCATATTGGTGTATTAATTAGT
TCCTTAGGAACCAAAGACTTTGAGAAAGATCTTTCCTTACTCCTTTTCCACATCATATGAAACA
ATTTGGGGCACACAAATGTCACTTGAAATGGTATGTAAATTGCTAGCCTCCAGTATGAGAGAAG
CATTAAGCCTCTGCCATCACTGATAAATTGGAAATGGAGTGTATACATAAGCATAAAACCTGAA
AACAGAGAAGCTTGCCATTTTTTGTGATCCCCTGACTAGCAATAGCCACTTAAAACTTCTCCCT
ATGTTTCACTAACATATCAGTGGCATTCAAGTACAGATTCATAGTCACGCTAAACATAGCTGGC
TAGCCAACCCAATGGAAGTCACAGTGGGAAACCGTGCTAGTTACAGGTACAGCTTGGCTGAAAT
CTCATTCCAGGAAGAAAAGGCTGGCTAAAGCTAAGGAAAGTAAGCTGCCATCCCTCTGTCTTTA
AAGGTCTATACATATAAGTTGTCTTTCCCATTAAAACTTTTTAATTGCAAAATTAAAAAAGTTA
ATTTCTCATTTCCTTTCCAGTAATACCTCAATTTAAGTGTTCCTATATTCAGTTTTCATTTCAT
ACACATAAACGCACACACAAAGACATACATACATGTGTACTACGTAGACACACACTCCCATATG
CACACCCCACATACTCTTGTGTACACATGCTTGAATACATTCACCAGCACCCACATGTATGCAC
TCGCACACTCCTCATGCACACAGGTTTTACTCTTGCTTCTCCAACAGAGAATCAGTAGAAAGGA
TACCAGTAACTTCTGAGTCATGAAATCCATTGTTTATTTTTTGAGTTTCACCATGACCTCCCAG
TAGAGTTCATTCCTGTGATTATTTCTTAACCCATGGAACCACTCTTGTCTTAGCTTCTGTGATA
AGATACTTTTCTGTCACAAAATAATGTCAGTTTATCTTTTCTCATGTTTACTTTTTAATTTTTT
TTTTTTACCCCAGTGTATTAGCTCCTGGGAGACGCTGTGATCAGATGTCACAGGTTAGATGGTT
TAAACAGCCAGTCACAAGTCCAGGATGAAGGCATTGGCAGATTGGCTACAGCATGTGTTCCTGG
TGTGCCTGTTCAGTGGAATTATATCTGAGGATTTCTCAAACCTAAAGACATCCAAGCAGGATGA
ATCCAGACCCACAAATAGACATGGCCAGATAAGACCCTGCATGACATGTTGCATTCAAAATGTC
AAAAATAAGCAGATAAACCCTACAGAGGCTATCAGAGGACAATGTTCCTCATAAGGAAA

hide sequence

RefSeq Acc Id:

XM_008761354 ⟹ XP_008759576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,829,004 - 187,906,253 (-)	NCBI
mRatBN7.2	2	185,141,869 - 185,217,498 (-)	NCBI
Rnor_6.0	2	199,716,450 - 199,792,262 (-)	NCBI

Sequence:

show sequence

ATGAGAACGGCCCCCGTGGGCTCCTAATATTTGAATGTTTGGTTCCTAGTTGATACGGCAGTTT
GGGAGAGATTAGGCTGTGTGCCCTGTTGAAGGAGGTGTGTCACTGGGGGTGGGCCTCAAGTCCT
CAAAGCCCAGCTCTAGATCCAGTCTCTCTCATTCTGCTTTATGCTGTGGATCAGATGTAAGCTC
TCAGCCGCTGCTCTAGAGCCATGACTACCTGCCTGTCGCCATGCTCCCTGGCGTGACGGTCACA
GACTCACCCTCTGAAACGGGATTCGTCTACGCTCTTACCAACTGGAGGGAGTCAACTGGCTAGT
CCAGTGCTTCCATGGCCAGAATGGCTGCATCCTGGGAGACGAGATGGGCCTGGGGAAGACCTGC
CAGACCATCGCTCTCCTCATTTACTTGGTGGGGAGACTGAACGACGAAGGGCCGTTTCTGATCC
TTTGTCCCTTGTCTGTTTTGAGCAACTGGAAAGAAGAGATGGAGAGATTTGCTCCAGGTCTTTC
CTGTGTGACATACACAGGTGACAAGGAAGAGAGAGCCCGCCGTCAGCAGGACCTAAGACAGGAG
TCGGGTTTTCATGTGCTGCTGACGACCTATGAGATTTGCCTGAAAGATGCCTCATTTCTAAAAT
CCTTCTCTTGGAGTGTCCTTGCTGTGGATGAAGCTCACAGATTGAAAAACCAGAGCTCCCTGCT
GCATAGGACACTTTCAGAGTTCTCAGTGGTTTTCCGTCTCCTGCTCACCGGAACTCCCATCCAG
AACAGCCTCCAGGAGCTCTACTCTCTTCTCAGCGTCGTGGAGCCTGATCTCTTCTGCAGAGAGC
AGGTGGAAGATTTCGTTCAGTGTTACCAGGACATTGAGAAAGAGTCCAAATCAGCCAGTGAGCT
GCACAGACTCCTGCGGCCTTTCCTCCTGAGGCGAGTGAAAGCTCAGGTGGCCACAGAGCTTCCC
AAGAAGACAGAGGTGGTGATATACCATGGCATGTCAGCACTGCAGAAAAAGTACTACAAGGCCA
TCTTGATGAAAGACCTAGATGCATTTGAGAACGAGACGGCAAAGAAAGTCAAACTCCAGAATGT
CCTAACGCAGCTTCGGAAGTGTGTGGACCACCCATATCTGTTTGATGGTGTGGAACCAGAGCCC
TTTGAAGTTGGAGAGCACCTGATTGAGGCCAGTGGGAAACTTCACCTGCTGGACAGGCTGCTGG
CATTTCTGTACTCTGGGGGCCACCGGGTTTTACTCTTCTCCCAGATGACCCACATGTTGGATAT
TCTGCAAGACTATATGGATTACAGAGGGTACAGCTATGAGCGTGTGGATGGCTCCGTGAGAGGA
GAGGAGAGACACCTGGCCATTAAGAACTTTGGAAAACAGCCCATCTTTGTTTTCCTCCTGAGCA
CCCGGGCAGGCGGAGTGGGCATGAACTTAACAGCAGCAGATACCGTTATTTTTGTCGACAGTGA
TTTTAATCCTCAGAATGACTTGCAGGCGGCTGCCCGAGCTCACCGGATCGGCCAGAACAAGTCT
GTTAAAGTCATCCGGCTCATCGGCCGAGACACCGTGGAAGAAATTGTGTATAGGAAGGCGGCCT
CCAAACTGCAGCTTACCAACATGGTCATAGAAGGAGGCCATTTCACCCTAGGAGCCCAGAAACC
TGCAGCTGAGGCCGACTTACAGTTAAGTGAGATACTCAAATTCGGCTTGGATAAGCTGCTGTCC
TCTGAGGGGAGCTCCATGGATGAAATAGACCTGAAGTCCATCCTGGGAGAAACCAAAGATGGCC
AGTGGACCCCTGATGCTCTGCCCGCAGCAGCAGAAGGAGAAAGCAGAGAACAAGAGGAAGGAAA
AAACCACATGTACTTATTTGAAGGCAGAGACTATTCTAAGGAGCCCAGTAAGGAAGACAGGAAG
TCGTTTGAACAGCTGGTGAATCTTCAGAAAACTCTTCTAGAGAAGACGAGTCATGGGGGCCGGT
CCCTCCGGAATAAAGGCAGTGTTCTTATCCCAGGCCTTGCAGAAGGGCCCATCAAAAGGAAGAA
GATTCTAAGTCCAGAAGAGCTGGAGGACAGACAGAAGAAAAGACAGGAAGCAGCAGCCAAGAGA
AAGAAGCTAATGGAGGAGAAGAAGAAGGCTAAGGAGGAGGCTGAACACAGGAAGAAGATGGCCT
GGTGGGAATCCAACGGTTATCAGTCCTTCTGCCTGCCCTCAGAGGACAGCGAGCTTGAGGACCT
CGAGGACCTCGAGGATGGAGACGAGACTTCTGCCGAGCTAGATTATGAAGATCTAGACTTGACC
TCCATTAACTATGTTAGCGGTGACGTCACCCACCCCCAGGCTGGCGAAGAGGACGCTGTCATTG
TGCACTGTGTCGATGACTCTGGCCGCTGGGGCAGAGGTGGCTTATTCACAGCTCTGGAAGCACG
GTCCGCTGAACCAAGAAAAATATATGAGCTGGCTGGGAAAATGAAAGATCTGAGTTTGGGCGAT
GTCCTTTTATTTCCCATCGATGATAAAGAGTCACGAGACAAGGGGCAAGACCTGTTGGCCTTGG
TGGTGGCTCAGCACCGCGATCGTACCAATGTCCTGTCTGGCATTAAGATGGCAGCCCTAGAAGA
GGGCCTGAAGAAGATACTTTTAGCAGCAAAGAAGAAGAAAGCAAGTGTTCATCTTCCACGAATT
GGACATGCTACAAAGGGTTTTAACTGGTATGGTACTGAAAGACTTATTCGGAAACACTTGGCTA
CCCGAGGCATCCCAACTTTCATATACTACTTTCCCAGAAGTAAGGCTGCTGCCTGCCATTCACA
GCCTGCATCCCCCACCTCAGCACCACTGGTTCCTTAGCAACCAGCCCAGCATCAGGTCCAGTTT
TCAGCAACCAGTTAGTTTGATTCATGTCCCCAGAGCAGCCATTAGTTTTCAGAAAACAAGGCTG
TCTTTGGTCATGTCCTCCGCTGTGGAATTTCTGAGCTAGTCTTTTCCGAATTCTAATTCTGTTC
GCCTGGGAGTGTTCCTGTAATACAGGAATGCACAGCTTATATGGGAAAGCCCTTTGGCTTCAGA
TTGCCTGAGCTTTATAATAATAAATTTCCTATTGTTAATGGTTA

hide sequence

RefSeq Acc Id:

XM_039103801 ⟹ XP_038959729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,829,004 - 187,880,894 (-)	NCBI
mRatBN7.2	2	185,141,869 - 185,192,129 (-)	NCBI

RefSeq Acc Id:

XM_039103804 ⟹ XP_038959732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,829,004 - 187,853,007 (-)	NCBI
mRatBN7.2	2	185,141,869 - 185,164,234 (-)	NCBI

RefSeq Acc Id:

XM_063281902 ⟹ XP_063137972

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,819,869 - 187,830,570 (-)	NCBI

RefSeq Acc Id:

XM_063281904 ⟹ XP_063137974

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,829,004 - 187,906,359 (-)	NCBI

RefSeq Acc Id:

XR_005501136

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,849,653 - 187,886,083 (-)	NCBI
mRatBN7.2	2	185,159,018 - 185,197,316 (-)	NCBI

RefSeq Acc Id:

XR_010063611

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	187,827,298 - 187,886,083 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101174	(Get FASTA)	NCBI Sequence Viewer
	XP_008759572	(Get FASTA)	NCBI Sequence Viewer
	XP_008759575	(Get FASTA)	NCBI Sequence Viewer
	XP_008759576	(Get FASTA)	NCBI Sequence Viewer
	XP_038959729	(Get FASTA)	NCBI Sequence Viewer
	XP_038959732	(Get FASTA)	NCBI Sequence Viewer
	XP_063137972	(Get FASTA)	NCBI Sequence Viewer
	XP_063137974	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL85586	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048925
	ENSRNOP00000048925.6
	ENSRNOP00000078480.1
	ENSRNOP00000084164
	ENSRNOP00000084164.1
	ENSRNOP00000086360
	ENSRNOP00000086360.1

RefSeq Acc Id:	XP_008759575 ⟸ XM_008761353
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A8B4 (UniProtKB/TrEMBL), A0A8I5ZYW5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLRRVNARELCPLAAARGSEGAGPWAEPFGMAGGSPRFLQALRAGDRPEPVRTRVQEQDLQEW GLTGIRLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLILCP LSVLSNWKEEMERFAPGLSCVTYTGDKEERARRQQDLRQESGFHVLLTTYEICLKDASFLKSFS WSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEPDLFCREQVE DFVQCYQDIEKESKSASELHRLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYYKAILM KDLDAFENETAKKVKLQNVLTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFL YSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGKQPIFVFLLSTRA GGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKL QLTNMVIEGGHFTLGAQKPAAEADLQLSEILKFGLDKLLSSEGSSMDEIDLKSILGETKDGQWT PDALPAAAEGESREQEEGKNHMYLFEGRDYSKEPSKEDRKSFEQLVNLQKTLLEKTSHGGRSLR NKGSVLIPGLAEGPIKRKKILSPEELEDRQKKRQEAAAKRKKLMEEKKKAKEEAEHRKKMAWWE SNGYQSFCLPSEDSELEDLEDLEDGDETSAELDYEDLDLTSINYVSGDVTHPQAGEEDAVIVHC VDDSGRWGRGGLFTALEARSAEPRKIYELAGKMKDLSLGDVLLFPIDDKESRDKGQDLLALVVA QHRDRTNVLSGIKMAALEEGLKKILLAAKKKKDWCTEGRAE hide sequence

RefSeq Acc Id:	XP_008759572 ⟸ XM_008761350
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZYW5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLRRVNARELCPLAAARGSEGAGPWAEPFGMAGGSPRFLQALRAGDRPEPVRTRVQEQDLQEW GLTGIRLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLILCP LSVLSNWKEEMERFAPGLSCVTYTGDKEERARRQQDLRQESGFHVLLTTYEICLKDASFLKSFS WSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEPDLFCREQVE DFVQCYQDIEKESKSASELHRLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYYKAILM KDLDAFENETAKKVKLQNVLTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFL YSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGKQPIFVFLLSTRA GGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKL QLTNMVIEGGHFTLGAQKPAAEADLQLSEILKFGLDKLLSSEGSSMDEIDLKSILGETKDGQWT PDALPAAAEGESREQEEGKNHMYLFEGRDYSKEPSKEDRKSFEQLVNLQKTLLEKTSHGGRSLR NKGSVLIPGLAEGPIKRKKILSPEELEDRQKKRQEAAAKRKKLMEEKKKAKEEAEHRKKMAWWE SNGYQSFCLPSEDSELEDLEDLEDGDETSAELDYEDLDLTSINYVSGDVTHPQAGEEDAVIVHC VDDSGRWGRGGLFTALEARSAEPRKIYELAGKMKDLSLGDVLLFPIDDKESRDKGQDLLALVVA QHRDRTNVLSGIKMAALEEGLKKILLAAKKKKASVHLPRIGHATKGFNWYGTERLIRKHLATRG IPTFIYYFPRSKAAACHSQPASPTSAPLVP hide sequence

RefSeq Acc Id:	XP_008759576 ⟸ XM_008761354
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZYW5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLGKTCQTIALLIYLVGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARR QQDLRQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLL LTGTPIQNSLQELYSLLSVVEPDLFCREQVEDFVQCYQDIEKESKSASELHRLLRPFLLRRVKA QVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNVLTQLRKCVDHPYLF DGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYER VDGSVRGEERHLAIKNFGKQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAH RIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEGGHFTLGAQKPAAEADLQLSEILKF GLDKLLSSEGSSMDEIDLKSILGETKDGQWTPDALPAAAEGESREQEEGKNHMYLFEGRDYSKE PSKEDRKSFEQLVNLQKTLLEKTSHGGRSLRNKGSVLIPGLAEGPIKRKKILSPEELEDRQKKR QEAAAKRKKLMEEKKKAKEEAEHRKKMAWWESNGYQSFCLPSEDSELEDLEDLEDGDETSAELD YEDLDLTSINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEARSAEPRKIYELAGKM KDLSLGDVLLFPIDDKESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKILLAAKKKKA SVHLPRIGHATKGFNWYGTERLIRKHLATRGIPTFIYYFPRSKAAACHSQPASPTSAPLVP hide sequence

Ensembl Acc Id:

ENSRNOP00000048925 ⟸ ENSRNOT00000043937

RefSeq Acc Id:	XP_038959729 ⟸ XM_039103801
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZYW5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959732 ⟸ XM_039103804
- Peptide Label:	isoform X7
- UniProtKB:	A6K3B4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000086360 ⟸ ENSRNOT00000115624

Ensembl Acc Id:

ENSRNOP00000084164 ⟸ ENSRNOT00000099918

RefSeq Acc Id:	XP_063137972 ⟸ XM_063281902
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZKZ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137974 ⟸ XM_063281904
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZYW5 (UniProtKB/TrEMBL), D4ACG6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001101174 ⟸ NM_001107704
- UniProtKB:	A0A8I5ZYW5 (UniProtKB/TrEMBL)

Protein Domains

Helicase ATP-binding Helicase C-terminal Macro Reverse transcriptase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACG6-F1-model_v2	AlphaFold	D4ACG6	1-903	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691602

Promoter ID:

EPDNEW_R2120

Type:

single initiation site

Name:

Chd1l_1

Description:

chromodomain helicase DNA binding protein 1-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	199,771,904 - 199,771,964	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311935	AgrOrtholog
BioCyc Gene	G2FUF-51937	BioCyc
Ensembl Genes	ENSRNOG00000017669	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000070631	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000043937	ENTREZGENE
	ENSRNOT00000043937.6	UniProtKB/TrEMBL
	ENSRNOT00000099918	ENTREZGENE
	ENSRNOT00000099918.1	UniProtKB/TrEMBL
	ENSRNOT00000115624	ENTREZGENE
	ENSRNOT00000115624.1	UniProtKB/TrEMBL
	ENSRNOT00000118555.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.220.10	UniProtKB/TrEMBL
	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
	Endonuclease/exonuclease/phosphatase	UniProtKB/TrEMBL
InterPro	A1pp	UniProtKB/TrEMBL
	ALC1	UniProtKB/TrEMBL
	DNA/RNA_helicase_C	UniProtKB/TrEMBL
	DNA/RNA_pol_sf	UniProtKB/TrEMBL
	Endo/exonu/phosph_ase_sf	UniProtKB/TrEMBL
	Endo/exonuclease/phosphatase	UniProtKB/TrEMBL
	Helicase_ATP-bd	UniProtKB/TrEMBL
	Macro_dom-like	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	RT_dom	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
NCBI Gene	310707	ENTREZGENE
PANTHER	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	UniProtKB/TrEMBL
	PTHR47157	UniProtKB/TrEMBL
	REVERSE TRANSCRIPTASES	UniProtKB/TrEMBL
Pfam	Exo_endo_phos	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	RVT_1	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
PhenoGen	Chd1l	PhenoGen
PROSITE	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	MACRO	UniProtKB/TrEMBL
	RT_POL	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017669	RatGTEx
	ENSRNOG00000070631	RatGTEx
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	DNA/RNA polymerases	UniProtKB/TrEMBL
	DNase I-like	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
	SSF52949	UniProtKB/TrEMBL
UniProt	A0A8I5ZKZ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZYW5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8B4	ENTREZGENE, UniProtKB/TrEMBL
	A6K3B4	ENTREZGENE, UniProtKB/TrEMBL
	D4ACG6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Chd1l	chromodomain helicase DNA binding protein 1-like	Chd1l_predicted	chromodomain helicase DNA binding protein 1-like (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Chd1l_predicted	chromodomain helicase DNA binding protein 1-like (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

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