Gene: Sycp1 (synaptonemal complex protein 1) Rattus norvegicus
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Symbol: Sycp1
Name: synaptonemal complex protein 1
Description: Predicted to have double-stranded DNA binding activity; predicted to be involved in several processes, including meiosis I cell cycle process, protein homotetramerization, and regulation of protein localization; localizes to the transverse filament; orthologous to human SYCP1 (synaptonemal complex protein 1); INTERACTS WITH 2-ethoxyethanol; 2-methoxyethanol; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: A coiled-coil related protein specific for synapsed regions of meiotic prophase chromosomes; SCP-1; SCP1
Orthologs:
Homo sapiens (human) : SYCP1 (synaptonemal complex protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Sycp1 (synaptonemal complex protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sycp1 (synaptonemal complex protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SYCP1 (synaptonemal complex protein 1)
Canis lupus familiaris (dog) : SYCP1 (synaptonemal complex protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sycp1 (synaptonemal complex protein 1)
Sus scrofa (pig) : SYCP1 (synaptonemal complex protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02205,274,766 - 205,426,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02224,746,025 - 224,857,015 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02224,707,701 - 224,725,381 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42197,989,614 - 198,164,611 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12197,952,370 - 198,127,365 (-)NCBI
Celera2182,717,279 - 182,930,195 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sycp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3794
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.