Gene: Vangl1 (VANGL planar cell polarity protein 1) Rattus norvegicus
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Symbol: Vangl1
Name: VANGL planar cell polarity protein 1
Description: INVOLVED IN pigmentation (ortholog); PARTICIPATES IN Wnt signaling pathway; ASSOCIATED WITH catecholaminergic polymorphic ventricular tachycardia (ortholog); catecholaminergic polymorphic ventricular tachycardia 2 (ortholog); clubfoot (ortholog); FOUND IN lateral plasma membrane (ortholog); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2-methoxyethanol; 3,3',5,5'-tetrabromobisphenol A
AGR Description: Predicted to be involved in pigmentation; predicted to localize to the lateral plasma membrane; orthologous to human VANGL1 (VANGL planar cell polarity protein 1).
Merged Description: Predicted to be involved in pigmentation; predicted to localize to the lateral plasma membrane; orthologous to human VANGL1 (VANGL planar cell polarity protein 1); PARTICIPATES IN Wnt signaling pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2-methoxyethanol; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC690366; similar to vang, van gogh-like 1; vang, van gogh-like 1; vang-like 1 (van gogh, Drosophila); vang-like protein 1
Orthologs:
Homo sapiens (human) : VANGL1 (VANGL planar cell polarity protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Vangl1 (VANGL planar cell polarity 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vangl1 (VANGL planar cell polarity protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : VANGL1 (VANGL planar cell polarity protein 1)
Canis lupus familiaris (dog) : VANGL1 (VANGL planar cell polarity protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vangl1 (VANGL planar cell polarity protein 1)
Sus scrofa (pig) : VANGL1 (VANGL planar cell polarity protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02204,575,592 - 204,625,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02224,008,378 - 224,058,149 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42197,248,680 - 197,296,021 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2182,024,255 - 182,069,939 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Genomics

Comparative Map Data
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QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
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Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Vangl1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1597324
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.