Wdr47 (WD repeat domain 47) - Rat Genome Database

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Gene: Wdr47 (WD repeat domain 47) Rattus norvegicus
Analyze
Symbol: Wdr47
Name: WD repeat domain 47
RGD ID: 1309181
Description: Predicted to act upstream of or within several processes, including detection of hot stimulus involved in thermoception; neuronal stem cell population maintenance; and telencephalon development. Located in cytoplasm. Orthologous to human WDR47 (WD repeat domain 47); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC310785; RGD1309181; similar to RIKEN cDNA 1810073M12; WD repeat-containing protein 47
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,914,977 - 198,975,844 (+)NCBIGRCr8
mRatBN7.22196,226,757 - 196,287,739 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,205,238 - 196,287,739 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,870,632 - 203,931,344 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,752,528 - 201,813,311 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,569,499 - 196,630,285 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,380,894 - 211,441,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,381,036 - 211,441,815 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,852,107 - 230,914,752 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,159,071 - 204,236,688 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12204,146,464 - 204,198,316 (+)NCBI
Celera2188,872,989 - 188,934,368 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. WD40-repeat 47, a microtubule-associated protein, is essential for brain development and autophagy. Kannan M, etal., Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9308-E9317. doi: 10.1073/pnas.1713625114. Epub 2017 Oct 12.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:34260930  


Genomics

Comparative Map Data
Wdr47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,914,977 - 198,975,844 (+)NCBIGRCr8
mRatBN7.22196,226,757 - 196,287,739 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,205,238 - 196,287,739 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,870,632 - 203,931,344 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,752,528 - 201,813,311 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,569,499 - 196,630,285 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,380,894 - 211,441,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,381,036 - 211,441,815 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,852,107 - 230,914,752 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,159,071 - 204,236,688 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12204,146,464 - 204,198,316 (+)NCBI
Celera2188,872,989 - 188,934,368 (+)NCBICelera
Cytogenetic Map2q34NCBI
WDR47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,970,214 - 109,042,102 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,970,214 - 109,042,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371109,512,836 - 109,584,724 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,314,359 - 109,386,258 (-)NCBINCBI36Build 36hg18NCBI36
Build 341109,224,877 - 109,296,777NCBI
Celera1107,782,247 - 107,854,996 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,405,708 - 107,478,125 (-)NCBIHuRef
CHM1_11109,627,778 - 109,697,851 (-)NCBICHM1_1
T2T-CHM13v2.01109,003,568 - 109,075,520 (-)NCBIT2T-CHM13v2.0
Wdr47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,498,302 - 108,553,035 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,498,595 - 108,553,035 (+)EnsemblGRCm39 Ensembl
GRCm383108,591,223 - 108,645,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,591,279 - 108,645,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv373108,394,196 - 108,448,637 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,719,473 - 108,773,775 (+)NCBIMGSCv36mm8
Celera3110,926,074 - 110,980,507 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.38NCBI
Wdr47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,414,600 - 12,466,040 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,414,964 - 12,479,883 (-)NCBIChiLan1.0ChiLan1.0
WDR47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,260,838 - 118,333,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,421,107 - 117,493,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,347,559 - 111,419,866 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,512,346 - 110,584,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,512,347 - 110,584,155 (-)Ensemblpanpan1.1panPan2
WDR47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,733,834 - 42,800,419 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,715,951 - 42,799,271 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,508,218 - 45,575,949 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0643,065,261 - 43,133,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,047,507 - 43,133,404 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,795,864 - 42,863,922 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,754,031 - 42,822,334 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,189,227 - 43,263,861 (+)NCBIUU_Cfam_GSD_1.0
Wdr47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,510,722 - 19,570,961 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704543,196 - 603,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704543,189 - 603,488 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4111,006,968 - 111,076,918 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14111,006,338 - 111,076,924 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,500,716 - 121,569,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,535,838 - 24,604,157 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,535,913 - 24,604,646 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603833,738,720 - 33,807,697 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,750,931 - 4,806,717 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247724,749,748 - 4,821,490 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr47
184 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:343
Count of miRNA genes:194
Interacting mature miRNAs:244
Transcripts:ENSRNOT00000055862
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2184114274202447032Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat

Markers in Region
RH139348  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22196,287,286 - 196,287,398 (+)MAPPERmRatBN7.2
Rnor_6.02211,441,365 - 211,441,476NCBIRnor6.0
Rnor_5.02230,914,300 - 230,914,411UniSTSRnor5.0
RGSC_v3.42204,236,238 - 204,236,349UniSTSRGSC3.4
Celera2188,933,918 - 188,934,029UniSTS
RH 3.4 Map21400.6UniSTS
Cytogenetic Map2q34UniSTS
AU048582  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22196,250,821 - 196,251,068 (+)MAPPERmRatBN7.2
Rnor_6.02211,404,960 - 211,405,206NCBIRnor6.0
Rnor_5.02230,877,857 - 230,878,103UniSTSRnor5.0
RGSC_v3.42204,199,268 - 204,199,514UniSTSRGSC3.4
Celera2188,896,986 - 188,897,232UniSTS
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12 8 2 8 2 74 22 40 11
Low 3 31 49 39 11 39 8 11 13 1 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000055862   ⟹   ENSRNOP00000052715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2196,226,867 - 196,287,737 (+)Ensembl
Rnor_6.0 Ensembl2211,381,036 - 211,441,815 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105849   ⟹   ENSRNOP00000077485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2196,205,238 - 196,287,739 (+)Ensembl
RefSeq Acc Id: NM_001100702   ⟹   NP_001094172
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,914,977 - 198,975,842 (+)NCBI
mRatBN7.22196,226,867 - 196,287,737 (+)NCBI
Rnor_6.02211,381,036 - 211,441,815 (+)NCBI
Rnor_5.02230,852,107 - 230,914,752 (+)NCBI
RGSC_v3.42204,159,071 - 204,236,688 (+)RGD
Celera2188,872,989 - 188,934,368 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233155   ⟹   XP_006233217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,915,090 - 198,975,844 (+)NCBI
mRatBN7.22196,226,763 - 196,287,739 (+)NCBI
Rnor_6.02211,380,896 - 211,441,817 (+)NCBI
Rnor_5.02230,852,107 - 230,914,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063281923   ⟹   XP_063137993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,919,753 - 198,975,844 (+)NCBI
RefSeq Acc Id: XM_063281924   ⟹   XP_063137994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,919,751 - 198,975,844 (+)NCBI
RefSeq Acc Id: XM_063281925   ⟹   XP_063137995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,919,757 - 198,975,844 (+)NCBI
RefSeq Acc Id: XM_063281926   ⟹   XP_063137996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,919,754 - 198,975,844 (+)NCBI
RefSeq Acc Id: XM_063281927   ⟹   XP_063137997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,927,195 - 198,975,844 (+)NCBI
RefSeq Acc Id: XM_063281928   ⟹   XP_063137998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,915,347 - 198,975,844 (+)NCBI
RefSeq Acc Id: XM_063281929   ⟹   XP_063137999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,927,195 - 198,975,844 (+)NCBI
RefSeq Acc Id: XM_063281930   ⟹   XP_063138000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,927,195 - 198,975,844 (+)NCBI
RefSeq Acc Id: XM_063281931   ⟹   XP_063138001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82198,915,090 - 198,975,844 (+)NCBI
RefSeq Acc Id: NP_001094172   ⟸   NM_001100702
- UniProtKB: G3V9M3 (UniProtKB/TrEMBL),   A6HV14 (UniProtKB/TrEMBL),   A0A8I5Y1M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233217   ⟸   XM_006233155
- Peptide Label: isoform X5
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000052715   ⟸   ENSRNOT00000055862
RefSeq Acc Id: ENSRNOP00000077485   ⟸   ENSRNOT00000105849
RefSeq Acc Id: XP_063138001   ⟸   XM_063281931
- Peptide Label: isoform X8
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137998   ⟸   XM_063281928
- Peptide Label: isoform X5
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137994   ⟸   XM_063281924
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137993   ⟸   XM_063281923
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137996   ⟸   XM_063281926
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137995   ⟸   XM_063281925
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137997   ⟸   XM_063281927
- Peptide Label: isoform X5
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137999   ⟸   XM_063281929
- Peptide Label: isoform X6
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL),   A6HV14 (UniProtKB/TrEMBL),   G3V9M3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138000   ⟸   XM_063281930
- Peptide Label: isoform X7
- UniProtKB: A0A8I5Y1M2 (UniProtKB/TrEMBL)
Protein Domains
CTLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9M3-F1-model_v2 AlphaFold G3V9M3 1-921 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691686
Promoter ID:EPDNEW_R2211
Type:initiation region
Name:Wdr47_1
Description:WD repeat domain 47
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02211,380,999 - 211,381,059EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309181 AgrOrtholog
BioCyc Gene G2FUF-51596 BioCyc
Ensembl Genes ENSRNOG00000020330 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055862 ENTREZGENE
  ENSRNOT00000055862.3 UniProtKB/TrEMBL
  ENSRNOT00000105849.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7320184 IMAGE-MGC_LOAD
InterPro CTLH_C UniProtKB/TrEMBL
  G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  LisH_dimerisation UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR47 UniProtKB/TrEMBL
KEGG Report rno:310785 UniProtKB/TrEMBL
MGC_CLONE MGC:109443 IMAGE-MGC_LOAD
NCBI Gene 310785 ENTREZGENE
PANTHER PTHR19863 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 47 UniProtKB/TrEMBL
Pfam LisH_TPL UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Wdr47 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE CTLH UniProtKB/TrEMBL
  LISH UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020330 RatGTEx
SMART CTLH UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A8I5Y1M2 ENTREZGENE, UniProtKB/TrEMBL
  A6HV14 ENTREZGENE, UniProtKB/TrEMBL
  G3V9M3 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJR0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Wdr47  WD repeat domain 47  RGD1309181  similar to RIKEN cDNA 1810073M12  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1309181  similar to RIKEN cDNA 1810073M12  RGD1309181_predicted  similar to RIKEN cDNA 1810073M12 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309181_predicted  similar to RIKEN cDNA 1810073M12 (predicted)  LOC310785_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310785_predicted  similar to RIKEN cDNA 1810073M12 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL