Rnpc3 (RNA-binding region (RNP1, RRM) containing 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Rnpc3 (RNA-binding region (RNP1, RRM) containing 3) Rattus norvegicus
Analyze
Symbol: Rnpc3
Name: RNA-binding region (RNP1, RRM) containing 3
RGD ID: 1582776
Description: Predicted to enable U12 snRNA binding activity and pre-mRNA intronic binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Predicted to be part of U12-type spliceosomal complex. Human ortholog(s) of this gene implicated in combined or isolated pituitary growth hormone deficiency 7. Orthologous to human RNPC3 (RNA binding region (RNP1, RRM) containing 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC686263; LOC691538; MGC188204; RNA-binding motif protein 40; RNA-binding protein 40; RNA-binding region-containing protein 3; similar to RNA-binding region (RNP1, RRM) containing 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82204,121,191 - 204,145,128 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2204,121,193 - 204,145,128 (-)EnsemblGRCr8
mRatBN7.22201,432,769 - 201,457,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2201,432,684 - 201,456,747 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2209,042,191 - 209,066,128 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02206,937,994 - 206,961,931 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02201,755,009 - 201,778,946 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02216,481,457 - 216,510,051 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2216,481,436 - 216,509,827 (-)Ensemblrn6Rnor6.0
Rnor_5.02234,574,802 - 234,603,484 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42209,600,629 - 209,626,600 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2193,966,907 - 193,990,841 (-)NCBICelera
Cytogenetic Map2q42NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)
U12-type spliceosomal complex  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15057822   PMID:15146077   PMID:15489334   PMID:15632090   PMID:18559850  


Genomics

Comparative Map Data
Rnpc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82204,121,191 - 204,145,128 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2204,121,193 - 204,145,128 (-)EnsemblGRCr8
mRatBN7.22201,432,769 - 201,457,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2201,432,684 - 201,456,747 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2209,042,191 - 209,066,128 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02206,937,994 - 206,961,931 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02201,755,009 - 201,778,946 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02216,481,457 - 216,510,051 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2216,481,436 - 216,509,827 (-)Ensemblrn6Rnor6.0
Rnor_5.02234,574,802 - 234,603,484 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42209,600,629 - 209,626,600 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2193,966,907 - 193,990,841 (-)NCBICelera
Cytogenetic Map2q42NCBI
RNPC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381103,525,699 - 103,555,239 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1103,525,691 - 103,555,239 (+)Ensemblhg38GRCh38
GRCh371104,068,321 - 104,097,861 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361103,893,839 - 103,899,384 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1102,260,908 - 102,290,242 (+)NCBICelera
Cytogenetic Map1p21.1NCBI
HuRef1102,123,813 - 102,153,095 (+)NCBIHuRef
CHM1_11104,183,765 - 104,213,046 (+)NCBICHM1_1
T2T-CHM13v2.01103,374,641 - 103,404,182 (+)NCBIT2T-CHM13v2.0
Rnpc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393113,398,716 - 113,423,798 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3113,398,716 - 113,423,798 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383113,605,067 - 113,630,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3113,605,067 - 113,630,149 (-)Ensemblmm10GRCm38
MGSCv373113,307,985 - 113,333,067 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363113,597,071 - 113,622,153 (-)NCBIMGSCv36mm8
Celera3119,998,383 - 120,023,481 (-)NCBICelera
Cytogenetic Map3F3NCBI
cM Map349.35NCBI
Rnpc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554357,951,841 - 7,971,994 (+)Ensembl
ChiLan1.0NW_0049554357,951,707 - 7,974,623 (+)NCBIChiLan1.0ChiLan1.0
RNPC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21123,450,262 - 123,496,382 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11122,607,477 - 122,653,580 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01106,189,351 - 106,219,302 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11105,323,391 - 105,353,352 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1105,323,791 - 105,349,892 (+)EnsemblpanPan2panpan1.1
RNPC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1646,960,033 - 47,044,272 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl647,016,038 - 47,044,236 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha649,741,149 - 49,835,539 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0647,287,659 - 47,382,209 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl647,354,657 - 47,382,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1647,041,712 - 47,070,204 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0646,950,056 - 47,044,434 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0647,387,818 - 47,482,249 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnpc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058113,479,124 - 113,508,163 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367301,063,516 - 1,085,333 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367301,063,719 - 1,086,983 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNPC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4115,288,276 - 115,311,652 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.14115,279,557 - 115,311,960 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24126,587,195 - 126,615,600 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNPC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12029,862,583 - 29,893,812 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2029,866,073 - 29,893,431 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603828,262,258 - 28,306,911 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnpc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248576,565,799 - 6,598,514 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248576,565,698 - 6,630,612 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnpc3
143 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:119
Interacting mature miRNAs:125
Transcripts:ENSRNOT00000023366
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2191709311217961898Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2192287802229609668Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2191709311217961898Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2192287802221089121Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat

Markers in Region
RH135378  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22201,456,973 - 201,457,179 (+)MAPPERmRatBN7.2
Rnor_6.02216,509,943 - 216,510,148NCBIRnor6.0
Rnor_5.02234,603,401 - 234,603,606UniSTSRnor5.0
RGSC_v3.42209,626,868 - 209,627,073UniSTSRGSC3.4
Celera2193,991,109 - 193,991,314UniSTS
RH 3.4 Map21444.61UniSTS
Cytogenetic Map2q41UniSTS
AA945099  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22201,432,802 - 201,432,910 (+)MAPPERmRatBN7.2
Rnor_6.02216,481,491 - 216,481,598NCBIRnor6.0
Rnor_5.02234,574,836 - 234,574,943UniSTSRnor5.0
RGSC_v3.42209,600,638 - 209,600,745UniSTSRGSC3.4
Celera2193,966,941 - 193,967,048UniSTS
RH 3.4 Map21441.6UniSTS
Cytogenetic Map2q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000023366   ⟹   ENSRNOP00000023366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2201,434,000 - 201,456,747 (-)Ensembl
Rnor_6.0 Ensembl2216,484,349 - 216,509,629 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087714   ⟹   ENSRNOP00000069232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2204,121,193 - 204,145,128 (-)Ensembl
mRatBN7.2 Ensembl2201,432,684 - 201,456,747 (-)Ensembl
Rnor_6.0 Ensembl2216,481,459 - 216,509,675 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088533   ⟹   ENSRNOP00000070327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2216,481,436 - 216,509,827 (-)Ensembl
RefSeq Acc Id: NM_001100810   ⟹   NP_001094280
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82204,121,191 - 204,145,128 (-)NCBI
mRatBN7.22201,432,769 - 201,456,706 (-)NCBI
Rnor_6.02216,481,457 - 216,509,675 (-)NCBI
Rnor_5.02234,574,802 - 234,603,484 (-)NCBI
RGSC_v3.42209,600,629 - 209,626,600 (-)RGD
Celera2193,966,907 - 193,990,841 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233211   ⟹   XP_006233273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82204,121,191 - 204,145,082 (-)NCBI
mRatBN7.22201,432,769 - 201,457,014 (-)NCBI
Rnor_6.02216,481,457 - 216,510,051 (-)NCBI
Rnor_5.02234,574,802 - 234,603,484 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761425   ⟹   XP_008759647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82204,121,191 - 204,145,082 (-)NCBI
mRatBN7.22201,432,769 - 201,457,015 (-)NCBI
Rnor_6.02216,484,363 - 216,510,051 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005500372
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82204,121,191 - 204,145,082 (-)NCBI
mRatBN7.22201,432,769 - 201,457,015 (-)NCBI
RefSeq Acc Id: XR_005500373
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82204,121,191 - 204,145,082 (-)NCBI
mRatBN7.22201,432,769 - 201,457,015 (-)NCBI
RefSeq Acc Id: NP_001094280   ⟸   NM_001100810
- UniProtKB: Q4G055 (UniProtKB/Swiss-Prot),   B2GV85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233273   ⟸   XM_006233211
- Peptide Label: isoform X1
- UniProtKB: Q4G055 (UniProtKB/Swiss-Prot),   B2GV85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759647   ⟸   XM_008761425
- Peptide Label: isoform X2
- UniProtKB: A0A8L2QC18 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069232   ⟸   ENSRNOT00000087714
Ensembl Acc Id: ENSRNOP00000023366   ⟸   ENSRNOT00000023366
Ensembl Acc Id: ENSRNOP00000070327   ⟸   ENSRNOT00000088533
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4G055-F1-model_v2 AlphaFold Q4G055 1-515 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691695
Promoter ID:EPDNEW_R2220
Type:multiple initiation site
Name:Rnpc3_1
Description:RNA-binding region (RNP1, RRM) containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02216,509,686 - 216,509,746EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1582776 AgrOrtholog
BioCyc Gene G2FUF-51534 BioCyc
Ensembl Genes ENSRNOG00000017310 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000087714 ENTREZGENE
  ENSRNOT00000087714.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
  6.10.250.610 UniProtKB/Swiss-Prot
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RBM40_RRM1 UniProtKB/Swiss-Prot
  RBM41/RNPC3 UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report rno:691538 UniProtKB/Swiss-Prot
NCBI Gene 691538 ENTREZGENE
PANTHER PTHR16105 UniProtKB/Swiss-Prot
  RNA-BINDING REGION-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rnpc3 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017310 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A8L2QC18 ENTREZGENE, UniProtKB/TrEMBL
  B2GV85 ENTREZGENE, UniProtKB/TrEMBL
  Q4G055 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-15 Rnpc3  RNA-binding region (RNP1, RRM) containing 3  LOC691538  similar to RNA-binding region (RNP1, RRM) containing 3  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2008-09-15 LOC691538  similar to RNA-binding region (RNP1, RRM) containing 3  LOC686263  similar to RNA-binding region (RNP1, RRM) containing 3  Data merged from RGD:1584301 737654 APPROVED
2006-11-19 LOC686263  similar to RNA-binding region (RNP1, RRM) containing 3      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691538  similar to RNA-binding region (RNP1, RRM) containing 3      Symbol and Name status set to provisional 70820 PROVISIONAL