Ubl4b (ubiquitin-like 4B) - Rat Genome Database

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Gene: Ubl4b (ubiquitin-like 4B) Rattus norvegicus
Analyze
Symbol: Ubl4b
Name: ubiquitin-like 4B
RGD ID: 1589125
Description: Predicted to be involved in positive regulation of protein targeting to mitochondrion. Orthologous to human UBL4B (ubiquitin like 4B); INTERACTS WITH bisphenol A; aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
Previously known as: hypothetical protein LOC684560; LOC684560; ubiquitin-like protein 4B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,880,669 - 197,883,167 (-)NCBIGRCr8
mRatBN7.22195,192,490 - 195,193,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,191,720 - 195,193,875 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2202,833,582 - 202,834,912 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02200,715,785 - 200,717,115 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02195,532,726 - 195,534,056 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,337,303 - 210,370,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.42203,107,245 - 203,110,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2187,841,702 - 187,843,052 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:24270810  


Genomics

Comparative Map Data
Ubl4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,880,669 - 197,883,167 (-)NCBIGRCr8
mRatBN7.22195,192,490 - 195,193,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,191,720 - 195,193,875 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2202,833,582 - 202,834,912 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02200,715,785 - 200,717,115 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02195,532,726 - 195,534,056 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,337,303 - 210,370,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.42203,107,245 - 203,110,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2187,841,702 - 187,843,052 (-)NCBICelera
Cytogenetic Map2q34NCBI
UBL4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,112,443 - 110,113,947 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,112,443 - 110,113,947 (+)EnsemblGRCh38hg38GRCh38
GRCh371110,655,065 - 110,656,569 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,456,585 - 110,458,092 (+)NCBINCBI36Build 36hg18NCBI36
Celera1108,902,036 - 108,903,543 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1108,524,556 - 108,526,063 (+)NCBIHuRef
CHM1_11110,769,937 - 110,771,444 (+)NCBICHM1_1
T2T-CHM13v2.01110,122,566 - 110,124,070 (+)NCBIT2T-CHM13v2.0
Ubl4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,461,014 - 107,462,389 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3107,461,003 - 107,462,389 (-)EnsemblGRCm39 Ensembl
GRCm383107,553,698 - 107,555,073 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,553,687 - 107,555,073 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,356,616 - 107,357,991 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363107,681,754 - 107,683,129 (-)NCBIMGSCv36mm8
Celera3109,886,020 - 109,887,395 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
Ubl4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543513,637,910 - 13,638,635 (+)NCBIChiLan1.0ChiLan1.0
UBL4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,924,448 - 116,971,643 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,072,564 - 116,109,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,728,737 - 112,760,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,584,679 - 127,611,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,581,341 - 127,581,865 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1127,581,341 - 127,581,865 (-)NCBIpanpan1.1panPan2
UBL4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,859,051 - 41,859,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,858,083 - 41,860,425 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,635,549 - 44,636,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,190,495 - 42,191,213 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1641,923,481 - 41,924,199 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0641,881,636 - 41,882,354 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,316,709 - 42,317,427 (-)NCBIUU_Cfam_GSD_1.0
Ubl4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,543,683 - 18,545,104 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367041,569,302 - 1,570,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBL4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14110,003,817 - 110,007,435 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UBL4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12023,429,119 - 23,429,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2023,429,147 - 23,429,671 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603835,029,746 - 35,031,229 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubl4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247725,877,524 - 5,880,003 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubl4b
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2184114274202447032Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat


Expression


Sequence


Ensembl Acc Id: ENSRNOT00000107100   ⟹   ENSRNOP00000096073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2195,191,720 - 195,193,875 (-)Ensembl
RefSeq Acc Id: NM_001402807   ⟹   NP_001389736
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82197,880,674 - 197,882,004 (-)NCBI
mRatBN7.22195,192,490 - 195,193,820 (-)NCBI
RefSeq Acc Id: XM_063281208   ⟹   XP_063137278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82197,880,669 - 197,883,167 (-)NCBI
Protein Sequences
Protein RefSeqs XP_001070979 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL81882 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000096073.1
Ensembl Acc Id: ENSRNOP00000096073   ⟸   ENSRNOT00000107100
RefSeq Acc Id: NP_001389736   ⟸   NM_001402807
RefSeq Acc Id: XP_063137278   ⟸   XM_063281208
- Peptide Label: isoform X1
Protein Domains
Ubiquitin-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589125 AgrOrtholog
Ensembl Genes ENSRNOG00000070136 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000107100.1 UniProtKB/TrEMBL
InterPro Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
  Ubl4_C_TUGS UniProtKB/TrEMBL
  UBL4B UniProtKB/TrEMBL
NCBI Gene Ubl4b ENTREZGENE
PANTHER PTHR47905 UniProtKB/TrEMBL
  UBIQUITIN-LIKE PROTEIN 4B UniProtKB/TrEMBL
Pfam Tugs UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PhenoGen Ubl4b PhenoGen
PRINTS UBIQUITIN UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000070136 RatGTEx
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A8I6B3P4_RAT UniProtKB/TrEMBL
  A6HUU6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Ubl4b  ubiquitin-like 4B  Ubl4b  ubiquitin-like 4B  Data merged from RGD:149736258 737654 PROVISIONAL
2021-08-09 Ubl4b  ubiquitin-like 4B      Symbol and Name status set to provisional 45752 PROVISIONAL
2012-09-26 Ubl4b  ubiquitin-like 4B  LOC684560  hypothetical protein LOC684560  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC684560  hypothetical protein LOC684560      Symbol and Name status set to provisional 70820 PROVISIONAL