Slc25a54 (solute carrier family 25, member 54)

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Gene: Slc25a54 (solute carrier family 25, member 54) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

Slc25a54

Name:

solute carrier family 25, member 54

RGD ID:

1583925

Description:

Predicted to enable ATP transmembrane transporter activity. Predicted to be involved in ADP transport and ATP transport. Predicted to be located in several cellular components, including chromatoid body; microtubule organizing center; and mitochondrial inner membrane.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC691448; LOC691448; similar to solute carrier family 25 member 24 isoform 1; uncharacterized protein LOC691448

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	SLC25A24 (solute carrier family 25 member 24)	HGNC	OrthoDB, Treefam
Homo sapiens (human):	PBX4 (PBX homeobox 4)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Slc25a54 (solute carrier family 25, member 54)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc25a24 (solute carrier family 25 member 24)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	F17E5.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG32103	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	SAL1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	YPR011C	Alliance	DIOPT (Ensembl Compara\|InParanoid\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc25a24	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	199,399,650 - 199,458,476 (+)	NCBI		GRCr8
mRatBN7.2	2	196,711,573 - 196,758,196 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	196,711,637 - 196,756,827 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	204,361,260 - 204,406,320 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	202,242,549 - 202,288,706 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	197,059,615 - 197,105,778 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	211,880,241 - 211,927,191 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	211,880,262 - 211,925,681 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	231,351,221 - 231,398,156 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	204,671,682 - 204,716,990 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	189,360,412 - 189,405,597 (+)	NCBI		Celera
Cytogenetic Map	2	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ADP transport (IBA)

ATP transport (IBA)

transmembrane transport (IEA)

Cellular Component

chromatoid body (IEA)

cytosol (IEA)

microtubule organizing center (IEA)

mitochondrial inner membrane (IEA)

Molecular Function

ATP transmembrane transporter activity (IBA)

calcium ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

Variants in Slc25a54
568 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	18
Count of miRNA genes:	17
Interacting mature miRNAs:	18
Transcripts:	ENSRNOT00000038315
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
61458	Bp10	Blood pressure QTL 10	3.42		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	189020722	215287351	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
4889834	Pur24	Proteinuria QTL 24	5.8	0.014	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	184114274	202447032	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	189599258	226936289	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	185876309	219753474	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298083	Bp158	Blood pressure QTL 158	2.62		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	189020722	215287351	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1331745	Bp203	Blood pressure QTL 203	4.377		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	189599258	218414891	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	189599258	234599258	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	190613715	226808892	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	184165752	229165752	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	189599258	234599258	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	25	61	60	42	24	42	3	76	28	18	45	18

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001836496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001836497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038315 ⟹ ENSRNOP00000032150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	196,711,637 - 196,756,827 (+)	Ensembl
Rnor_6.0 Ensembl	2	211,880,262 - 211,925,681 (+)	Ensembl

RefSeq Acc Id:

NM_001109640 ⟹ NP_001103110

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	199,399,706 - 199,444,891 (+)	NCBI
mRatBN7.2	2	196,711,637 - 196,756,827 (+)	NCBI
Rnor_6.0	2	211,880,262 - 211,925,681 (+)	NCBI
Rnor_5.0	2	231,351,221 - 231,398,156 (+)	NCBI
RGSC_v3.4	2	204,671,682 - 204,716,990 (+)	RGD
Celera	2	189,360,412 - 189,405,597 (+)	RGD

Sequence:

show sequence

TCAGGTGCAGACCTGTGGTTCTGGACAAAAGTGGTGTGGTCCTTGGGGGTCGTAGCGGCCGCAA
CTGCGGGGCGATGCTAAGCTGGCTGCAAGATGTTCTGTGGCCCTCCAAGGCCCCCAAGAGTGAC
TATGATGACCTGGCCTTTGAGATCCTCTTCGAAGACCTGGATCGCAATGGAGATGGCGTGGTGG
ACATCACGGAGCTCAGGGATGGGCTGGAACACTGGAACTCCTCCTTTGGCATAGACCCCGAGAA
GAAAATTCTTAAGAGTGCAGATTCCAATGCCGATTCAGGACTGGATTTTGGAGAATTTGTGAAG
TACCTTCAAGACCATGAGAAGAAAATGAAACTGGCATTCAAGAGTCTGGACAAAAATGCCGATG
GCGTAATAGATGCTTCTGAAGTAGTTGCTGCCATGAAATCATTGGGAATCCACATTTCTCTCGC
TCAGGCCAACGACATCCTGAAAAGCATGGATGCCGATGGGTCAATGACAGTAGACTGGGATGAA
TGGAGAGACTACTTTTTCTTTCACCCTGCAAAAAATGTCACCGACATTATTCGTTTCTGGAAGC
ATTCTACTATAATTGATATAGGAGAGAGTGTAAGTATTCCAGATGAATTTACAGAACAAGAGAA
GAAGTCTGGAGAATGGTGGAAGAGATTAGTAGCAGCAGGAATAGCGAGTGCGATCACACGGACG
TGCACGGCGCCTTTGGACCGCTTGAAAGTCATGATACAGGTTCAAAGTTCAAAGATGAGCAAAC
TGAGATTGGTCCATGTGTTCAAGCAGATGGTAAAAGAAGGAGGCTTGTTTTCTCTTTGGCGAGG
AAATGGTGTAAATATTTTTAAAATTACACCAGAGACGGCAATCAAGATTGGGGCCTATGAACAG
TATAAGAAGCTTCTTAGTTTCGAGGATGCTAATTTAGGGTTTCTTCAAAGATTTACAGCTGGTT
CCATGGCTGGTATAACTTCTCAAACCTGTGTTTACCCCTTGGAGGTGATAAAGACCAGGCTGAT
TCTGGGTAGAACTGGAGAGTTCTCTGGGATTATTGACTGTGGCAGGAAGCTTCTGAGGAGAGAG
GGCATTCAGGCCTTCAGCAGAGGCTATGTTCCGAACCTGCTGAGTATTGTACCGTATGCAGGCT
TGGATCTCACCATCTTTGAGCTTCTGAAGAATTACTGGCTAGAACACTATGCAGAAAGCTCCGT
GAACCCGGGGTTAGCAATTGTGCTGGGTTGTAGCACACTGTCGCACACTTTCGGCCAGTTGGCC
AGTTTCCCCCTGAACCTTGTTAGAACTCGCATGCAGGCAGCCATGCTGGAAAATGAAACAATAC
CCATGATGCAGCTCATCCAGGAAATATACACCAAAGAAGGGAAGAAGGGATTTTTTAGGGGTTT
AACCCCTAATGTCCTCAAGCTGCTTCCTGCAGTGGGCATTGGCTGTGTGGCTCATGAACTAGTG
AACTTGCTTTTTGGACTAACTTAGAAGTGGAATAACAAACTGTCATCACTGCCATAATCACTAA
GGTATAAGATAATACCTGGGTTATAAGGTGACCTTACTTTTTCCTAAAAAGAAAGAAATATCAA
CTACTTGTAAAATTACTTTGTCTTTATTTATTATAAAATATACAAACTAAATGGTAGTTTTGGC
AAAAT

hide sequence

RefSeq Acc Id:

XM_017591123 ⟹ XP_017446612

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	199,399,650 - 199,458,476 (+)	NCBI
mRatBN7.2	2	196,711,574 - 196,758,196 (+)	NCBI
Rnor_6.0	2	211,880,241 - 211,927,191 (+)	NCBI

Sequence:

show sequence

GGCAGTTGGGGCTGGCGCGCCTCAGGTGCAGACCTGTGGTTCTGGACAAAAGTGGTGTGGTCCT
TGGGGGTCGTAGCGGCCGCAACTGCGGGGCGATGCTAAGCTGGCTGCAAGATGTTCTGTGGCCC
TCCAAGGCCCCCAAGAGTGACTATGATGACCTGGCCTTTGAGATCCTCTTCGAAGACCTGGATC
GCAATGGAGATGGCGTGGTGGACATCACGGAGCTCAGGGATGGGCTGGAACACTGGAACTCCTC
CTTTGGCATAGACCCCGAGAAGAAAATTCTTAAGAGTGCAGATTCCAATGCCGATTCAGGACTG
GATTTTGGAGAATTTGTGAAGTACCTTCAAGACCATGAGAAGAAAATGAAACTGGCATTCAAGA
GTCTGGACAAAAATGCCGATGGCGTAATAGATGCTTCTGAAGTAGTTGCTGCCATGAAATCATT
GGGAATCCACATTTCTCTCGCTCAGGCCAACGACATCCTGAAAAGCATGGATGCCGATGGGTCA
ATGACAGTAGACTGGGATGAATGGAGAGACTACTTTTTCTTTCACCCTGCAAAAAATGTCACCG
ACATTATTCGTTTCTGGAAGCATTCTACTATAATTGATATAGGAGAGAGTGTAAGTATTCCAGA
TGAATTTACAGAACAAGAGAAGAAGTCTGGAGAATGGTGGAAGAGATTAGTAGCAGCAGGAATA
GCGAGTGCGATCACACGGACGTGCACGGCGCCTTTGGACCGCTTGAAAGTCATGATACAGGTTC
AAAGTTCAAAGATGAGCAAACTGAGATTGGTCCATGTGTTCAAGCAGATGGTAAAAGAAGGAGG
CTTGTTTTCTCTTTGGCGAGGAAATGGTGTAAATATTTTTAAAATTACACCAGAGACGGCAATC
AAGATTGGGGCCTATGAACAGTATAAGAAGCTTCTTAGTTTCGAGGATGCTAATTTAGGGTTTC
TTCAAAGATTTACAGCTGGTTCCATGGCTGGTATAACTTCTCAAACCTGTGTTTACCCCTTGGA
GGTGATAAAGACCAGGCTGATTCTGGGTAGAACTGGAGAGTTCTCTGGGATTATTGACTGTGGC
AGGAAGCTTCTGAGGAGAGAGGGCATTCAGGCCTTCAGCAGAGGCTATGTTCCGAACCTGCTGA
GTATTGTACCGTATGCAGGCTTGGATCTCACCATCTTTGAGCTTCTGAAGAATTACTGGCTAGA
ACACTATGCAGAAAGCTCCGTGAACCCGGGGTTAGCAATTGTGCTGGGTTGTAGCACACTGTCG
CACACTTTCGGCCAGTTGGCCAGTTTCCCCCTGAACCTTGTTAGAACTCGCATGCAGGCAGCCA
TGCTGGAAAATGAAACAATACCCATGATGCAGCTCATCCAGGAAATATACACCAAAGAAGGGAA
GAAGGGATTTTTTAGGGGTTTAACCCCTAATGTCCTCAAGCTGCTTCCTGCAGTGGGCATTGGC
TGTGTGGCTCATGAACTAGTGAACTTGCTTTTTGGACTAACTTAGAAGTGGAATAACAAACTGT
CATCACTGCCATAATCACTAAGCAGATATCAACTGTACAAGATGAGCATTTCCTCTGTGTCATT
TTCCTACATTATGCCATATCGTGATCACATTCAACAACAAACTGGTTAAAAGGTGAGCAAAGGA
CTTGGATAGACATTTCCCCCAAGAGAATATACAAACGACACAAATAAGCAAAGAAAAACTGCTT
GGCGTTCCTGATCACAGGGAAAGCAATTTAAAGCCTCAAGGACATCCCATCTCACGCTGCCGCC
ATGATGGCTATCGTGGAGAAGCCAGCCAGGGCTGGTGAGCATTTGGAGAAGCTGGGACTCCGAG
TACTGTTGATGGAGCACAGAGCCATGGAGAAGAGTTCTGAGCGGACCTCATGAGACCAAAAGCA
GGATGACTGCATGGCCCAGCAGCCTACACTATTTCAAAAGCAATTCAGAGCAGGGTCTTAAGGG
ACGATCTGCTCCTCTATGCTCATCTCAGCATTGCCTGCAATAACCAAAATGTACAGCCACTTGA
AAGTCCCCACACCTGTGAATAAACGGTGGTGTATGCATACAATGGAATGCCATTTCTACTTTGA
AAGACCATCCTGATGTATAGAGAGTACATATGGATGAACTAGTCACAAAGGCTAAACATATGTA
CCCTAGAGTGATCAGAGCCATAGAGGCAGGTGACTGCCAGTGGCTTGGGAGGGAG

hide sequence

RefSeq Acc Id:

XM_017591124 ⟹ XP_017446613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	199,399,650 - 199,458,476 (+)	NCBI
mRatBN7.2	2	196,711,573 - 196,758,196 (+)	NCBI
Rnor_6.0	2	211,880,241 - 211,927,191 (+)	NCBI

Sequence:

show sequence

GGCAGTTGGGGCTGGCGCGCCTCAGGTGCAGACCTGTGGTTCTGGACAAAAGTGGTGTGGTCCT
TGGGGGTCGTAGCGGCCGCAACTGCGGGGCGATGCTAAGCTGGCTGCAAGATGTTCTGTGGCCC
TCCAAGGCCCCCAAGAGTGACTATGATGACCTGGCCTTTGAGATCCTCTTCGAAGACCTGGATC
GCAATGGAGATGGCGTGGTGGACATCACGGAGCTCAGGGATGGGCTGGAACACTGGAACTCCTC
CTTTGGCATAGACCCCGAGAAGAAAATTCTTAAGAGTGCAGATTCCAATGCCGATTCAGGACTG
GATTTTGGAGAATTTGTGAAGTACCTTCAAGACCATGAGAAGAAAATGAAACTGGCATTCAAGA
GTCTGGACAAAAATGCCGATGGCGTAATAGATGCTTCTGAAGTAGTTGCTGCCATGAAATCATT
GGGAATCCACATTTCTCTCGCTCAGGCCAACGACATCCTGAAAAGCATGGATGCCGATGGGTCA
ATGACAGTAGACTGGGATGAATGGAGAGACTACTTTTTCTTTCACCCTGCAAAAAATGTCACCG
ACATTATTCGTTTCTGGAAGCATTCTACTATAATTGATATAGGAGAGAGTGTAAGTATTCCAGA
TGAATTTACAGAACAAGAGAAGAAGTCTGGAGAATGGTGGAAGAGATTAGTAGCAGCAGGAATA
GCGAGTGCGATCACACGGACGTGCACGGCGCCTTTGGACCGCTTGAAAGTCATGATACAGGTTC
AAAGTTCAAAGATGAGCAAACTGAGATTGGTCCATGTGTTCAAGCAGATGGTAAAAGAAGGAGG
CTTGTTTTCTCTTTGGCGAGGAAATGGTGTAAATATTTTTAAAATTACACCAGAGACGGCAATC
AAGATTGGGGCCTATGAACAGTATAAGAAGCTTCTTAGTTTCGAGGATGCTAATTTAGGGTTTC
TTCAAAGATTTACAGCTGGTTCCATGGCTGGTATAACTTCTCAAACCTGTGTTTACCCCTTGGA
GGTGATAAAGACCAGGCTGATTCTGGGTAGAACTGGAGAGTTCTCTGGGATTATTGACTGTGGC
AGGAAGCTTCTGAGGAGAGAGGGCATTCAGGCCTTCAGCAGAGGCTATGTTCCGAACCTGCTGA
GTATTGTACCGTATGCAGGCTTGGATCTCACCATCTTTGAGCTTCTGAAGAATTACTGGCTAGA
ACACTATGCAGAAAGCTCCGTGAACCCGGGGTTAGCAATTGTGCTGGGTTGTAGCACACTGTCG
CACACTTTCGGCCAGTTGGCCAGTTTCCCCCTGAACCTTGTTAGAACTCGCATGCAGGCAGCCA
TGCTGGAAAATGAAACAATACCCATGATGCAGCTCATCCAGGAAATATACACCAAAGAAGGGAA
GAAGGGATTTTTTAGGGGTTTAACCCCTAATGTCCTCAAGCTGCTTCCTGCAGTGGGCATTGGC
TGTGTGGCTCATGAACTAGTGAACTTGCTTTTTGGACTAACTTAGAAGTGGAATAACAAACTGT
CATCACTGCCATAATCACTAAGATATCAACTGTACAAGATGAGCATTTCCTCTGTGTCATTTTC
CTACATTATGCCATATCGTGATCACATTCAACAACAAACTGGTTAAAAGGTGAGCAAAGGACTT
GGATAGACATTTCCCCCAAGAGAATATACAAACGACACAAATAAGCAAAGAAAAACTGCTTGGC
GTTCCTGATCACAGGGAAAGCAATTTAAAGCCTCAAGGACATCCCATCTCACGCTGCCGCCATG
ATGGCTATCGTGGAGAAGCCAGCCAGGGCTGGTGAGCATTTGGAGAAGCTGGGACTCCGAGTAC
TGTTGATGGAGCACAGAGCCATGGAGAAGAGTTCTGAGCGGACCTCATGAGACCAAAAGCAGGA
TGACTGCATGGCCCAGCAGCCTACACTATTTCAAAAGCAATTCAGAGCAGGGTCTTAAGGGACG
ATCTGCTCCTCTATGCTCATCTCAGCATTGCCTGCAATAACCAAAATGTACAGCCACTTGAAAG
TCCCCACACCTGTGAATAAACGGTGGTGTATGCATACAATGGAATGCCATTTCTACTTTGAAAG
ACCATCCTGATGTATAGAGAGTACATATGGATGAACTAGTCACAAAGGCTAAACATATGTACCC
TAGAGTGATCAGAGCCATAGAGGCAGGTGACTGCCAGTGGCTTGGGAGGGAG

hide sequence

RefSeq Acc Id:

XM_039103170 ⟹ XP_038959098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	199,399,824 - 199,458,476 (+)	NCBI
mRatBN7.2	2	196,711,751 - 196,758,196 (+)	NCBI

RefSeq Acc Id:

XM_039103171 ⟹ XP_038959099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	199,399,823 - 199,458,476 (+)	NCBI
mRatBN7.2	2	196,711,772 - 196,758,196 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001103110	(Get FASTA)	NCBI Sequence Viewer
	XP_017446612	(Get FASTA)	NCBI Sequence Viewer
	XP_017446613	(Get FASTA)	NCBI Sequence Viewer
	XP_038959098	(Get FASTA)	NCBI Sequence Viewer
	XP_038959099	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81975	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032150.4

RefSeq Acc Id:

NP_001103110 ⟸ NM_001109640

- UniProtKB:

D3ZTW5 (UniProtKB/TrEMBL), A6HV39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLSWLQDVLWPSKAPKSDYDDLAFEILFEDLDRNGDGVVDITELRDGLEHWNSSFGIDPEKKIL
KSADSNADSGLDFGEFVKYLQDHEKKMKLAFKSLDKNADGVIDASEVVAAMKSLGIHISLAQAN
DILKSMDADGSMTVDWDEWRDYFFFHPAKNVTDIIRFWKHSTIIDIGESVSIPDEFTEQEKKSG
EWWKRLVAAGIASAITRTCTAPLDRLKVMIQVQSSKMSKLRLVHVFKQMVKEGGLFSLWRGNGV
NIFKITPETAIKIGAYEQYKKLLSFEDANLGFLQRFTAGSMAGITSQTCVYPLEVIKTRLILGR
TGEFSGIIDCGRKLLRREGIQAFSRGYVPNLLSIVPYAGLDLTIFELLKNYWLEHYAESSVNPG
LAIVLGCSTLSHTFGQLASFPLNLVRTRMQAAMLENETIPMMQLIQEIYTKEGKKGFFRGLTPN
VLKLLPAVGIGCVAHELVNLLFGLT

hide sequence

RefSeq Acc Id:	XP_017446612 ⟸ XM_017591123
- Peptide Label:	isoform X1
- UniProtKB:	D3ZTW5 (UniProtKB/TrEMBL), A6HV39 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSWLQDVLWPSKAPKSDYDDLAFEILFEDLDRNGDGVVDITELRDGLEHWNSSFGIDPEKKIL KSADSNADSGLDFGEFVKYLQDHEKKMKLAFKSLDKNADGVIDASEVVAAMKSLGIHISLAQAN DILKSMDADGSMTVDWDEWRDYFFFHPAKNVTDIIRFWKHSTIIDIGESVSIPDEFTEQEKKSG EWWKRLVAAGIASAITRTCTAPLDRLKVMIQVQSSKMSKLRLVHVFKQMVKEGGLFSLWRGNGV NIFKITPETAIKIGAYEQYKKLLSFEDANLGFLQRFTAGSMAGITSQTCVYPLEVIKTRLILGR TGEFSGIIDCGRKLLRREGIQAFSRGYVPNLLSIVPYAGLDLTIFELLKNYWLEHYAESSVNPG LAIVLGCSTLSHTFGQLASFPLNLVRTRMQAAMLENETIPMMQLIQEIYTKEGKKGFFRGLTPN VLKLLPAVGIGCVAHELVNLLFGLT hide sequence

RefSeq Acc Id:	XP_017446613 ⟸ XM_017591124
- Peptide Label:	isoform X1
- UniProtKB:	D3ZTW5 (UniProtKB/TrEMBL), A6HV39 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSWLQDVLWPSKAPKSDYDDLAFEILFEDLDRNGDGVVDITELRDGLEHWNSSFGIDPEKKIL KSADSNADSGLDFGEFVKYLQDHEKKMKLAFKSLDKNADGVIDASEVVAAMKSLGIHISLAQAN DILKSMDADGSMTVDWDEWRDYFFFHPAKNVTDIIRFWKHSTIIDIGESVSIPDEFTEQEKKSG EWWKRLVAAGIASAITRTCTAPLDRLKVMIQVQSSKMSKLRLVHVFKQMVKEGGLFSLWRGNGV NIFKITPETAIKIGAYEQYKKLLSFEDANLGFLQRFTAGSMAGITSQTCVYPLEVIKTRLILGR TGEFSGIIDCGRKLLRREGIQAFSRGYVPNLLSIVPYAGLDLTIFELLKNYWLEHYAESSVNPG LAIVLGCSTLSHTFGQLASFPLNLVRTRMQAAMLENETIPMMQLIQEIYTKEGKKGFFRGLTPN VLKLLPAVGIGCVAHELVNLLFGLT hide sequence

Ensembl Acc Id:

ENSRNOP00000032150 ⟸ ENSRNOT00000038315

RefSeq Acc Id:	XP_038959098 ⟸ XM_039103170
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038959099 ⟸ XM_039103171
- Peptide Label:	isoform X3

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZTW5-F1-model_v2	AlphaFold	D3ZTW5	1-473	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1583925	AgrOrtholog
BioCyc Gene	G2FUF-51582	BioCyc
Ensembl Genes	ENSRNOG00000027522	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038315.5	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-like_dom	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_Ca-bd	UniProtKB/TrEMBL
	Mit_carrier	UniProtKB/TrEMBL
	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom	UniProtKB/TrEMBL
KEGG Report	rno:691448	UniProtKB/TrEMBL
NCBI Gene	691448	ENTREZGENE
PANTHER	SOLUTE CARRIER FAMILY 25	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 25, MEMBER 54	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
	EF_hand_3	UniProtKB/TrEMBL
	Mito_carr	UniProtKB/TrEMBL
PhenoGen	Slc25a54	PhenoGen
PRINTS	MITOCARRIER	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	SOLCAR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000027522	RatGTEx
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	Mitoch_carrier	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
UniProt	A6HV39	ENTREZGENE, UniProtKB/TrEMBL
	D3ZTW5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-01-23	Slc25a54	solute carrier family 25, member 54	LOC691448	similar to solute carrier family 25 member 24 isoform 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC691448	similar to solute carrier family 25 member 24 isoform 1	LOC684863	similar to solute carrier family 25 member 24 isoform 1	Data merged from RGD:1585533	1643240	APPROVED
2006-11-19	LOC691448	similar to solute carrier family 25 member 24 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC684863	similar to solute carrier family 25 member 24 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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