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Gene: CHTOP (chromatin target of PRMT1) Pan paniscus

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Symbol:

CHTOP

Name:

chromatin target of PRMT1

RGD ID:

11909587

Description:

ENCODES a protein that exhibits methyl-CpG binding (inferred); RNA binding (inferred); INVOLVED IN in utero embryonic development (ortholog); positive regulation of ATP-dependent activity (ortholog); positive regulation of helicase activity (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN nuclear speck (inferred); transcription export complex (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	96,186,853 - 96,198,958 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	95,922,882 - 95,934,368 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	128,989,920 - 129,002,242 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	132,617,934 - 132,630,654 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	132,617,934 - 132,630,654 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

in utero embryonic development (ISO)

mRNA export from nucleus (IEA)

positive regulation of ATP-dependent activity (ISO)

positive regulation of helicase activity (ISO)

Cellular Component

nuclear speck (IEA)

transcription export complex (IEA)

Molecular Function

methyl-CpG binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

Genomics

Comparative Map Data

CHTOP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	96,186,853 - 96,198,958 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	95,922,882 - 95,934,368 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	128,989,920 - 129,002,242 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	132,617,934 - 132,630,654 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	132,617,934 - 132,630,654 (+)	Ensembl	panpan1.1		panPan2

CHTOP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,634,066 - 153,646,306 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,633,982 - 153,646,306 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	153,606,542 - 153,618,782 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	151,873,149 - 151,884,603 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	126,677,559 - 126,689,013 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	124,969,964 - 124,982,321 (+)	NCBI		HuRef
CHM1_1	1	155,002,435 - 155,014,759 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	152,771,330 - 152,783,570 (+)	NCBI		T2T-CHM13v2.0

Chtop
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,405,846 - 90,417,400 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,406,263 - 90,416,805 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	90,498,539 - 90,509,527 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,498,956 - 90,509,498 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	90,302,880 - 90,313,365 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,584,885 - 90,595,370 (-)	NCBI		MGSCv36	mm8
Celera	3	90,536,803 - 90,547,288 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.24	NCBI

Chtop
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI		GRCr8
mRatBN7.2	2	175,981,266 - 175,992,820 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,981,271 - 175,992,748 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,121,379 - 183,132,881 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,143,642 - 181,155,144 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,743,986 - 175,755,485 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,887,850 - 189,900,079 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,887,857 - 189,899,325 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,318,314 - 209,330,501 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,772,001 - 182,783,476 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,722,109 - 182,733,582 (-)	NCBI
Celera	2	169,916,772 - 169,928,245 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Chtop
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	282,342 - 292,785 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	282,342 - 292,428 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHTOP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,418,902 - 43,428,012 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	43,419,707 - 43,427,856 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,911,925 - 42,921,035 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,368,614 - 43,377,725 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	43,368,614 - 43,377,583 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	43,070,678 - 43,079,784 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	43,124,385 - 43,133,500 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,408,041 - 43,417,155 (-)	NCBI		UU_Cfam_GSD_1.0

Chtop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,404,354 - 24,414,140 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,434,773 - 3,445,080 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,436,260 - 3,444,522 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHTOP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	95,994,263 - 96,005,585 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,889,209 - 104,898,793 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHTOP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	10,159,463 - 10,170,949 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	10,154,734 - 10,170,883 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	9,536,012 - 9,548,571 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chtop
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	3,501,470 - 3,511,451 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	3,501,468 - 3,511,481 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003817153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008970343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008970344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008970345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034935925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000025763 ⟹ ENSPPAP00000005718

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	132,617,934 - 132,630,654 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000025770 ⟹ ENSPPAP00000005721

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	132,617,934 - 132,630,654 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000025807 ⟹ ENSPPAP00000005731

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	132,620,681 - 132,629,614 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000025810 ⟹ ENSPPAP00000005734

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	132,620,681 - 132,629,420 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000025828 ⟹ ENSPPAP00000005740

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	132,620,681 - 132,622,807 (+)	Ensembl

RefSeq Acc Id:

XM_003817153 ⟹ XP_003817201

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	96,186,853 - 96,198,958 (-)	NCBI
NHGRI_mPanPan1	1	95,922,882 - 95,934,328 (-)	NCBI
Mhudiblu_PPA_v0	1	128,989,920 - 129,002,242 (+)	NCBI
PanPan1.1	1	132,617,934 - 132,630,654 (+)	NCBI

Sequence:

show sequence

CAGCGCAACCACTACTGGAACGTGAAGTCCCCGGCACGCCCCAACAACAGGATCATTGGCCACG
CCCCTAGGGGCGGGTCACTGCATGGAAAGCCCCGCCTTCGCCCTAAGGCTCCGCCTCTGATCTC
TGCGCAGGCGTAGCTCAAATCTTTCCCGCCCTCTAGTCGTGCGCGGATCTGACGCCGGACGTAA
TTGCGTAGACGCCATTTTAGCCGGTCAGACAAGCACTGGACGTGGCGGCCATTTTGTTTTGGAC
ACCGAGCAGGAGCTGGCGGCCGCTGCAGACGAAAGGCAGGAAAGGGCAGGCCGGGTGAGCAGAC
GGATCGGCCGACTAGACAGCCAACCAACAACAACGAACTGAGCTCGCATACTACCGCTTACGCA
TCTAACCAACCGCCCATCTAGCTAACCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGTCC
CCGGCCCGCCTGCCGGAGCCGTGGTGGCAGCCCCGGGAGGAGCACTGGCGTCTATTTCCTTCGA
TTCTCGGGATTTGAAGATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAG
ATGTCTCTAAATGAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGACGCCAGTGAATATTC
GGGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGAT
GGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTG
GGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAGTCG
GAGGACGAGGCCTACCCATAATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGC
CACCAGAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCAAAACCTGCTCCGAGGTGGACGA
GCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAG
GGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGG
TCGGGGAAGAGGGGGCTTTGGAGGCCGAGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCT
CGCCCTGTATTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATATATGTCGAAAACAAAAG
GACACCTGGATGCTGAGTTGGATGCCTACATGGCGCAGACAGATCCTGAAACCAATGATTGAAG
CCTGCCCACCCTCCCATGAGAGACTCTTGTTAGTCAGCACATCTGTAAATAACCTTGAGATAAC
AGATGAGAAGAAATCTGATTGATGCTGGATGGACCTATCACAATAGGCTGTGGACTTACTTGCC
ACCAGCTTGTGCATTTAGTGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAACCCTTTTG
TCCTTTGATTTGGTTTTTGTTTTTGTTTTTTTAAGGGGGAGGGGGGGTTTCCCCTCCTTTGCCC
AGACTTCTCTTTGAACACAAATGCATTAGCCTTGTGGCTAGAACACCCTCTTCCTACCTCTGTC
TCCCCTCACTTGTCATATGCTCTGACATGCTAACATTTCTTTTGTTCATCCCTGTTGCCTCCAC
AGAAACATCCCAGAAAAACCGGTCAGTGTTCCTTCCTCCCTGATCCTTAGGTTTCTGAAATAGG
GTTCTGTTACATCCTCTTCGATAGCCTGTTTAAAATGTTTAGAAGGTCTGGAGCTCAAAAATGC
ATTCTTCCACATTGATAATTTAGTAAACTGAGAACATTGACATCACTACAGGGCAGCATAAGAG
GTTGCTTACATGTGGTAGCAGCTCTGGTTTGATTCAAGTTGCTACCATGTACATTGACACCACA
TATACCATAACCAGTGTGCTGGGTTGAATTGAACTTTCTACCCTTGTATTAGATTTACAGACTT
TCCTTCTGGGTTTGTATCATGACCAGAGGGGTACTATAGGGTTGGTTTATACTGCAATATAGAG
GATCAGAAGCCATTTGATTTGGTAGGTGTGTCAGAAGGGAGAATGATGGCAGACGAACTGCTGG
AAGAGGTCAGAAGATACCCATGCTAAAATGCAATTATATCCTCATGTTTATCCCAAACTAATCT
TGGACTTTTCCACTCATTAGCTTTGTTTTGCCCTTGTTTCCCTTGAAGGTTTAATTAAGTTCAA
CCATATTCTGTCAACTGTTCAGTTTCAGTGGAATCTTGTATTTCTGGTTCATTATAACAAATTG
TTCGCTTAAATCCA

hide sequence

RefSeq Acc Id:

XM_008970343 ⟹ XP_008968591

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	96,186,853 - 96,198,958 (-)	NCBI
NHGRI_mPanPan1	1	95,922,882 - 95,934,368 (-)	NCBI
Mhudiblu_PPA_v0	1	128,989,920 - 129,002,242 (+)	NCBI
PanPan1.1	1	132,618,083 - 132,630,173 (+)	NCBI

Sequence:

show sequence

TTTCCCGCCCTCTAGTCGTGCGCGGATCTGACGCCGGACGTAATTGCGTAGACGCCATTTTAGC
CGGTCAGACAAGCACTGGACGTGGCGGCCATTTTGTTTTGGACACCGAGCAGGAGCTGGCGGCC
GCTGCAGACGAAAGGCAGGAAAGGGCAGGCCGGGTGAGCAGACGGATCGGCCGACTAGACAGCC
AACCAACAACAACGAACTGAGCTCGCATACTACCGCTTACGCATCTAACCAACCGCCCATCTAG
CTAACCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGTCCCCGGCCCGCCTGCCGGAGCCG
TGGTGGCAGCCCCGGGAGGAGCACTGGCGTCTATTTCCTTCGATTCTCGGGATTTGAAGATGGC
TGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTT
ACTAATATGCTGAAGAACAAACAGCCGACGCCAGTGAATATTCGGGCTTCGATGCAGCAACAAC
AGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCA
GGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGCCTGGGTAAGAGTAACATCCAGGCACGG
TTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAGTCGGAGGACGAGGCCTACCCATAATCC
AGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCACCAGAACCCTACTTAGGGGCGG
GATGTCGCTCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTA
AGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGG
GTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGGTCGGGGAAGAGGGGGCTTTGGAGG
CCGAGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTATTGACCAAGGAGCAG
CTGGACAACCAATTGGATGCATATATGTCGAAAACAAAAGGACACCTGGATGCTGAGTTGGATG
CCTACATGGCGCAGACAGATCCTGAAACCAATGATTGAAGCCTGCCCACCCTCCCATGAGAGAC
TCTTGTTAGTCAGCACATCTGTAAATAACCTTGAGATAACAGATGAGAAGAAATCTGATTGATG
CTGGATGGACCTATCACAATAGGCTGTGGACTTACTTGCCACCAGCTTGTGCATTTAGTGTGTT
CCTTTTACTTTTTGATACTGTGTTGTATGAAACCCTTTTGTCCTTTGATTTGGTTTTTGTTTTT
GTTTTTTTAAGGGGGAGGGGGGGTTTCCCCTCCTTTGCCCAGACTTCTCTTTGAACACAAATGC
ATTAGCCTTGTGGCTAGAACACCCTCTTCCTACCTCTGTCTCCCCTCACTTGTCATATGCTCTG
ACATGCTAACATTTCTTTTGTTCATCCCTGTTGCCTCCACAGAAACATCCCAGAAAAACCGGTC
AGTGTTCCTTCCTCCCTGATCCTTAGGTTTCTGAAATAGGGTTCTGTTACATCCTCTTCGATAG
CCTGTTTAAAATGTTTAGAAGGTCTGGAGCTCAAAAATGCATTCTTCCACATTGATAATTTAGT
AAACTGAGAACATTGACATCA

hide sequence

RefSeq Acc Id:

XM_008970344 ⟹ XP_008968592

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	96,186,853 - 96,198,958 (-)	NCBI
NHGRI_mPanPan1	1	95,922,882 - 95,934,324 (-)	NCBI
Mhudiblu_PPA_v0	1	128,989,920 - 129,002,242 (+)	NCBI
PanPan1.1	1	132,617,934 - 132,630,654 (+)	NCBI

Sequence:

show sequence

CAGCGCAACCACTACTGGAACGTGAAGTCCCCGGCACGCCCCAACAACAGGATCATTGGCCACG
CCCCTAGGGGCGGGTCACTGCATGGAAAGCCCCGCCTTCGCCCTAAGGCTCCGCCTCTGATCTC
TGCGCAGGCGTAGCTCAAATCTTTCCCGCCCTCTAGTCGTGCGCGGATCTGACGCCGGACGTAA
TTGCGTAGACGCCATTTTAGCCGGTCAGACAAGCACTGGACGTGGCGGCCATTTTGTTTTGGAC
ACCGAGCAGGAGCTGGCGGCCGCTGCAGACGAAAGGCAGGAAAGGGCAGGCCGGGTGAGCAGAC
GGATCGGCCGACTAGACAGCCAACCAACAACAACGAACTGAGCTCGCATACTACCGCTTACGCA
TCTAACCAACCGCCCATCTAGCTAACCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGTCC
CCGGCCCGCCTGCCGGAGCCGTGGTGGCAGCCCCGGGAGGAGCACTGGCGTCTATTTCCTTCGA
TTCTCGGGATTTGAAGATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAG
ATGTCTCTAAATGAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGACGCCAGTGAATATTC
GGGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGAT
GGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTG
GGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAGTCG
GAGGACGAGGCCTACCCATAATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGC
CACCAGAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCGGGGTATGATAGGTCGGGGAAGA
GGGGGCTTTGGAGGCCGAGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTAT
TGACCAAGGAGCAGCTGGACAACCAATTGGATGCATATATGTCGAAAACAAAAGGACACCTGGA
TGCTGAGTTGGATGCCTACATGGCGCAGACAGATCCTGAAACCAATGATTGAAGCCTGCCCACC
CTCCCATGAGAGACTCTTGTTAGTCAGCACATCTGTAAATAACCTTGAGATAACAGATGAGAAG
AAATCTGATTGATGCTGGATGGACCTATCACAATAGGCTGTGGACTTACTTGCCACCAGCTTGT
GCATTTAGTGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAACCCTTTTGTCCTTTGATT
TGGTTTTTGTTTTTGTTTTTTTAAGGGGGAGGGGGGGTTTCCCCTCCTTTGCCCAGACTTCTCT
TTGAACACAAATGCATTAGCCTTGTGGCTAGAACACCCTCTTCCTACCTCTGTCTCCCCTCACT
TGTCATATGCTCTGACATGCTAACATTTCTTTTGTTCATCCCTGTTGCCTCCACAGAAACATCC
CAGAAAAACCGGTCAGTGTTCCTTCCTCCCTGATCCTTAGGTTTCTGAAATAGGGTTCTGTTAC
ATCCTCTTCGATAGCCTGTTTAAAATGTTTAGAAGGTCTGGAGCTCAAAAATGCATTCTTCCAC
ATTGATAATTTAGTAAACTGAGAACATTGACATCACTACAGGGCAGCATAAGAGGTTGCTTACA
TGTGGTAGCAGCTCTGGTTTGATTCAAGTTGCTACCATGTACATTGACACCACATATACCATAA
CCAGTGTGCTGGGTTGAATTGAACTTTCTACCCTTGTATTAGATTTACAGACTTTCCTTCTGGG
TTTGTATCATGACCAGAGGGGTACTATAGGGTTGGTTTATACTGCAATATAGAGGATCAGAAGC
CATTTGATTTGGTAGGTGTGTCAGAAGGGAGAATGATGGCAGACGAACTGCTGGAAGAGGTCAG
AAGATACCCATGCTAAAATGCAATTATATCCTCATGTTTATCCCAAACTAATCTTGGACTTTTC
CACTCATTAGCTTTGTTTTGCCCTTGTTTCCCTTGAAGGTTTAATTAAGTTCAACCATATTCTG
TCAACTGTTCAGTTTCAGTGGAATCTTGTATTTCTGGTTCATTATAACAAATTGTTCGCTTAAA
TCCA

hide sequence

RefSeq Acc Id:

XM_008970345 ⟹ XP_008968593

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	96,186,853 - 96,198,958 (-)	NCBI
NHGRI_mPanPan1	1	95,922,882 - 95,934,323 (-)	NCBI
Mhudiblu_PPA_v0	1	128,989,920 - 129,002,242 (+)	NCBI
PanPan1.1	1	132,617,934 - 132,630,654 (+)	NCBI

Sequence:

show sequence

CAGCGCAACCACTACTGGAACGTGAAGTCCCCGGCACGCCCCAACAACAGGATCATTGGCCACG
CCCCTAGGGGCGGGTCACTGCATGGAAAGCCCCGCCTTCGCCCTAAGGCTCCGCCTCTGATCTC
TGCGCAGGCGTAGCTCAAATCTTTCCCGCCCTCTAGTCGTGCGCGGATCTGACGCCGGACGTAA
TTGCGTAGACGCCATTTTAGCCGGTCAGACAAGCACTGGACGTGGCGGCCATTTTGTTTTGGAC
ACCGAGCAGGAGCTGGCGGCCGCTGCAGACGAAAGGCAGGAAAGGGCAGGCCGGGTGAGCAGAC
GGATCGGCCGACTAGACAGCCAACCAACAACAACGAACTGAGCTCGCATACTACCGCTTACGCA
TCTAACCAACCGCCCATCTAGCTAACCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGTCC
CCGGCCCGCCTGCCGGAGCCGTGGTGGCAGCCCCGGGAGGAGCACTGGCGTCTATTTCCTTCGA
TTCTCGGGATTTGAAGATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAG
ATGTCTCTAAATGAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGACGCCAGTGAATATTC
GGGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGAT
GGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGCCTGGGT
AAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAGTCGGAG
GACGAGGCCTACCCATAATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCAC
CAGAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCGGGGTATGATAGGTCGGGGAAGAGGG
GGCTTTGGAGGCCGAGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTATTGA
CCAAGGAGCAGCTGGACAACCAATTGGATGCATATATGTCGAAAACAAAAGGACACCTGGATGC
TGAGTTGGATGCCTACATGGCGCAGACAGATCCTGAAACCAATGATTGAAGCCTGCCCACCCTC
CCATGAGAGACTCTTGTTAGTCAGCACATCTGTAAATAACCTTGAGATAACAGATGAGAAGAAA
TCTGATTGATGCTGGATGGACCTATCACAATAGGCTGTGGACTTACTTGCCACCAGCTTGTGCA
TTTAGTGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAACCCTTTTGTCCTTTGATTTGG
TTTTTGTTTTTGTTTTTTTAAGGGGGAGGGGGGGTTTCCCCTCCTTTGCCCAGACTTCTCTTTG
AACACAAATGCATTAGCCTTGTGGCTAGAACACCCTCTTCCTACCTCTGTCTCCCCTCACTTGT
CATATGCTCTGACATGCTAACATTTCTTTTGTTCATCCCTGTTGCCTCCACAGAAACATCCCAG
AAAAACCGGTCAGTGTTCCTTCCTCCCTGATCCTTAGGTTTCTGAAATAGGGTTCTGTTACATC
CTCTTCGATAGCCTGTTTAAAATGTTTAGAAGGTCTGGAGCTCAAAAATGCATTCTTCCACATT
GATAATTTAGTAAACTGAGAACATTGACATCACTACAGGGCAGCATAAGAGGTTGCTTACATGT
GGTAGCAGCTCTGGTTTGATTCAAGTTGCTACCATGTACATTGACACCACATATACCATAACCA
GTGTGCTGGGTTGAATTGAACTTTCTACCCTTGTATTAGATTTACAGACTTTCCTTCTGGGTTT
GTATCATGACCAGAGGGGTACTATAGGGTTGGTTTATACTGCAATATAGAGGATCAGAAGCCAT
TTGATTTGGTAGGTGTGTCAGAAGGGAGAATGATGGCAGACGAACTGCTGGAAGAGGTCAGAAG
ATACCCATGCTAAAATGCAATTATATCCTCATGTTTATCCCAAACTAATCTTGGACTTTTCCAC
TCATTAGCTTTGTTTTGCCCTTGTTTCCCTTGAAGGTTTAATTAAGTTCAACCATATTCTGTCA
ACTGTTCAGTTTCAGTGGAATCTTGTATTTCTGGTTCATTATAACAAATTGTTCGCTTAAATCC
A

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Protein Sequences


Protein RefSeqs	XP_003817201	(Get FASTA)	NCBI Sequence Viewer
	XP_008968591	(Get FASTA)	NCBI Sequence Viewer
	XP_008968592	(Get FASTA)	NCBI Sequence Viewer
	XP_008968593	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000005718
	ENSPPAP00000005718.1
	ENSPPAP00000005721
	ENSPPAP00000005721.1
	ENSPPAP00000005731.1
	ENSPPAP00000005734.1
	ENSPPAP00000005740.1

RefSeq Acc Id:	XP_003817201 ⟸ XM_003817153
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZL73 (UniProtKB/TrEMBL), A0A2R8ZP17 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQMENRPS VQAALKLKQKSLKQRLGKSNIQARLGRPIGALARGAVGGRGLPIIQRGLPRGGLRGGRATRTLL RGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG FGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND hide sequence

RefSeq Acc Id:	XP_008968592 ⟸ XM_008970344
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R8ZP10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQMENRPS VQAALKLKQKSLKQRLGKSNIQARLGRPIGALARGAVGGRGLPIIQRGLPRGGLRGGRATRTLL RGGMSLRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDA YMAQTDPETND hide sequence

RefSeq Acc Id:

XP_008968593 ⟸ XM_008970345

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQMENRPS
VQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAVGGRGLPIIQRGLPRGGLRGGRATRTLLR
GGMSLRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAY
MAQTDPETND

hide sequence

RefSeq Acc Id:	XP_008968591 ⟸ XM_008970343
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZP17 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQMENRPS VQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAVGGRGLPIIQRGLPRGGLRGGRATRTLLR GGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGF GGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND hide sequence

Ensembl Acc Id:

ENSPPAP00000005718 ⟸ ENSPPAT00000025763

Ensembl Acc Id:

ENSPPAP00000005721 ⟸ ENSPPAT00000025770

Ensembl Acc Id:

ENSPPAP00000005731 ⟸ ENSPPAT00000025807

Ensembl Acc Id:

ENSPPAP00000005740 ⟸ ENSPPAT00000025828

Ensembl Acc Id:

ENSPPAP00000005734 ⟸ ENSPPAT00000025810

Protein Domains

Chromatin target of PRMT1 protein C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000023376	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000025763.1	UniProtKB/TrEMBL
	ENSPPAT00000025770.1	UniProtKB/TrEMBL
	ENSPPAT00000025807.1	UniProtKB/TrEMBL
	ENSPPAT00000025810.1	UniProtKB/TrEMBL
	ENSPPAT00000025828.1	UniProtKB/TrEMBL
InterPro	CTOP_PRMT1	UniProtKB/TrEMBL
	FoP_C	UniProtKB/TrEMBL
KEGG Report	pps:100985663	UniProtKB/TrEMBL
NCBI Gene	CHTOP	ENTREZGENE
PANTHER	CHROMATIN TARGET OF PRMT1 PROTEIN	UniProtKB/TrEMBL
	CHROMATIN TARGET OF PRMT1 PROTEIN	UniProtKB/TrEMBL
Pfam	FoP_duplication	UniProtKB/TrEMBL
SMART	FoP_duplication	UniProtKB/TrEMBL
UniProt	A0A2R8ZL73	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZL87_PANPA	UniProtKB/TrEMBL
	A0A2R8ZMD2_PANPA	UniProtKB/TrEMBL
	A0A2R8ZP10	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZP17	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar