Advanced Search (OLGA)

Gene: CHTOP (chromatin target of PRMT1) Sus scrofa

Analyze

Symbol:

CHTOP

Name:

chromatin target of PRMT1

RGD ID:

14093969

Description:

ENCODES a protein that exhibits methyl-CpG binding (inferred); RNA binding (inferred); INVOLVED IN in utero embryonic development (ortholog); positive regulation of ATP-dependent activity (ortholog); positive regulation of helicase activity (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN nuclear speck (inferred); transcription export complex (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

chromatin target of PRMT1 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHTOP (chromatin target of PRMT1)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHTOP (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHTOP (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHTOP (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	95,994,263 - 96,005,585 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,889,209 - 104,898,793 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IBA,IEA)

in utero embryonic development (ISO)

mRNA export from nucleus (IEA)

positive regulation of ATP-dependent activity (ISO)

positive regulation of helicase activity (ISO)

Cellular Component

nuclear speck (IBA,IEA)

transcription export complex (IEA)

Molecular Function

methyl-CpG binding (IBA,IEA)

protein binding (ISO)

RNA binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712

Genomics

Comparative Map Data

CHTOP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	95,994,263 - 96,005,585 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,889,209 - 104,898,793 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHTOP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,634,066 - 153,646,306 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,633,982 - 153,646,306 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	153,606,542 - 153,618,782 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	151,873,149 - 151,884,603 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	126,677,559 - 126,689,013 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	124,969,964 - 124,982,321 (+)	NCBI		HuRef
CHM1_1	1	155,002,435 - 155,014,759 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	152,771,330 - 152,783,570 (+)	NCBI		T2T-CHM13v2.0

Chtop
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,405,846 - 90,417,400 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,406,263 - 90,416,805 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	90,498,539 - 90,509,527 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,498,956 - 90,509,498 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	90,302,880 - 90,313,365 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,584,885 - 90,595,370 (-)	NCBI		MGSCv36	mm8
Celera	3	90,536,803 - 90,547,288 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.24	NCBI

Chtop
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI		GRCr8
mRatBN7.2	2	175,981,266 - 175,992,820 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,981,271 - 175,992,748 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,121,379 - 183,132,881 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,143,642 - 181,155,144 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,743,986 - 175,755,485 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,887,850 - 189,900,079 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,887,857 - 189,899,325 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,318,314 - 209,330,501 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,772,001 - 182,783,476 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,722,109 - 182,733,582 (-)	NCBI
Celera	2	169,916,772 - 169,928,245 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Chtop
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	282,342 - 292,785 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	282,342 - 292,428 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHTOP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	96,186,853 - 96,198,958 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	95,922,882 - 95,934,368 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	128,989,920 - 129,002,242 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	132,617,934 - 132,630,654 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	132,617,934 - 132,630,654 (+)	Ensembl	panpan1.1		panPan2

CHTOP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,418,902 - 43,428,012 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	43,419,707 - 43,427,856 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,911,925 - 42,921,035 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,368,614 - 43,377,725 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	43,368,614 - 43,377,583 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	43,070,678 - 43,079,784 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	43,124,385 - 43,133,500 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,408,041 - 43,417,155 (-)	NCBI		UU_Cfam_GSD_1.0

Chtop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,404,354 - 24,414,140 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,434,773 - 3,445,080 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,436,260 - 3,444,522 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHTOP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	10,159,463 - 10,170,949 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	10,154,734 - 10,170,883 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	9,536,012 - 9,548,571 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chtop
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	3,501,470 - 3,511,451 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	3,501,468 - 3,511,481 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CHTOP
211 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001243268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005663348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005663349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005663350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK345475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK345807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK349088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK393545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU137691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU814888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01118688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JF830003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JF835108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000030235 ⟹ ENSSSCP00000021462

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	95,996,031 - 96,005,564 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000033082 ⟹ ENSSSCP00000029931

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	95,994,263 - 96,005,584 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000034019 ⟹ ENSSSCP00000047977

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	95,996,033 - 96,005,576 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000039921 ⟹ ENSSSCP00000042306

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	95,999,893 - 96,005,585 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000074618 ⟹ ENSSSCP00000066809

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	96,002,348 - 96,005,585 (-)	Ensembl

RefSeq Acc Id:

NM_001243268 ⟹ NP_001230197

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	95,996,884 - 96,005,614 (-)	NCBI

Sequence:

show sequence

ATTTTAGCCGGTCCCATTCCGCACTGGGCGTGGCGGCCATTTTGTTTTGGAGAGCGAGCGGGAG
TTGGCGGCAGCGGCTGTGGTGAAAGGCAGGAAAGGGCACGCCGGGCGAGCAGGCGAACCGGCCG
ACCGGACAGCCACCCAGCATCAACGAACTAACCTAGCATTCTACCGTTTAACACATACAACCAA
CCGCCCACCAAGTTAATCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGCCCCCGGCCAGC
CTGTCGCAGCCCGTGGTGGCAAACCCCGGGAGGGAGCACTGGCGTCCGTTTCCTTTCGATTCTC
GGGATTTGAAGATGGCTGCACAGTCAGCACCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTC
TCTAAATGAGCGCTTTACTAATATGCTGAAGAACAAACAACCGATGCCAGTGAATATTCGGGCT
TCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGA
ATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTGGGTAA
GAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAATCGGAGGA
CGAGGCCTGCCCATTATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCACAA
GAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGT
AGCTCCCCGAATGGGCTTAAGAAGGGGTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAGGGGGC
CTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGGCCGGG
GAAGAGGGGGCTTTGGAGGCCGAGGACGTGGACGTGGACGAGGGAGAGGTGCCCTTGCTCGCCC
TGTACTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAAAGGACAC
TTGGATGCTGAGTTGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATTGAAGCCTGC
TCGCCCTCCTGTGAGACTCTTGTTCTAGTCACACATCTGTAAATAACCTTGAGATAACAGATGG
GAAGAAACCTGATTGATGCTGGAAGGACCTATCATAATAGGCTGTGGACTGACTTGCCACAAGT
TTGTGCATTTAGTGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAACACTTTTTGCCTCT
GC

hide sequence

RefSeq Acc Id:

XM_005663348 ⟹ XP_005663405

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI

Sequence:

show sequence

TTGGGCCGCTCCCACGGCATATGGAGGTTCCCAGGCTAGGGGTTGAATCAGAGGTGCAGCCACC
TGGCCTACGCCAGAGCCACAGCAACGCTGGATCCGAGCCGCGTCTGCAACCTACACCACAGCTC
ACAGCAATGCCGGATCGTTAACCCACTGAGCAAGGCTAGGGATCGAACCCGCAACCTCATGGTT
CCTAGTTGGGTTCCTTAACCACTGCGCCACGACGGGAACTCCCATCTGAGCCTTTTATTGTGTG
CCCAGGTATAAGGAAAATGCCATATAGGTCTGCATCAAAATCCACATGGAAGCTAGATGGAGGG
AGAAGACATTGGAATAGGTTGCGGGGACGCAAAGCTTCCCCCAAATAAGAATTTAACAATCTTC
AGGCCAAATTGGGAAGGGAAGTGAAGAGAAAAATATGGACGGGCAGTGGTGCGTGGTGCAGGAT
CCAGTGAGGTGTGCTCCCTGCACTGGTCCCCAGGTGCGTTTATGGCAACCCACAACTCTAAAAG
GGGCGTATGCTGAGGGGGGAGCCAGCGCAAATTACACCGGCCCGGTGGCTCTCGGAAGAAAGAC
CGAGTCATGTCGCGTAAAGAATTTTAGTCGGTCTGCCTTAGCTTTAGGGGTGGAGGGACCCGCA
ATGAAATACGAACTTCTTTTCTTAAGAGGACCAAATCCGCCTTGAACGTCCCAAATCACCAACT
TGCAGCCGCCTTAAAACCCAAGAGAGAATATATTGGCCACGCCCCTTCCCGGGTGGGGCTCGGA
GTGTAATACAGCCTAAAGCCCCGCCTTTTCCCTGGAGCTCCGCCTCATCCCCCGCGCAGGCGTA
ACACAAATTTTCCCGCCTCCTGCGCTGTGCGCAGACCTGACGTCTGACGTAATGGCGTCGACGC
CATTTTAGCCGGTCCCATTCCGCACTGGGCGTGGCGGCCATTTTGTTTTGGAGAGCGAGCGGGA
GTTGGCGGCAGCGGCTGTGGTGAAAGGCAGGAAAGGGCACGCCGGGCGAGCAGGCGAACCGGCC
GACCGGACAGCCACCCAGCATCAACGAACTAACCTAGCATTCTACCGTTTAACACATACAACCA
ACCGCCCACCAAGTTAATCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGCCCCCGGCCAG
CCTGTCGCAGCCGTGGTGGCAACCCCGGGAGGAGCACTGGCGTCCGTTTCCTTCGATTCTCGGG
ATTTGAAGATGGCTGCACAGTCAGCACCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCT
AAATGAGCGCTTTACTAATATGCTGAAGAACAAACAACCGATGCCAGTGAATATTCGGGCTTCG
ATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATA
GACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGACTTTATATGCAAGTCCGGACAGTGGCTG
TGGAAGGATATGTCCAAGCTGTGGCTGGGCGTCTGGAGGGCGGTGCCATGCAACTAAGAGCTTA
AAGCAGCGCCTGGGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCA
GGGGAGCAATCGGAGGACGAGGCCTGCCCATTATCCAGAGAGGCTTGCCCAGAGGAGGACTACG
TGGGGGACGTGCCACAAGAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCAAAACCTGCTC
CGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAG
GTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCG
GGGTATGATAGGCCGGGGAAGAGGGGGCTTTGGAGGCCGAGGCCGTGGACGTGGACGAGGGAGA
GGTGCCCTTGCTCGCCCTGTACTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGT
CGAAAACTAAAGGACACTTGGATGCTGAGTTGGATGCCTACATGGCACAGACAGATCCTGAAAC
CAATGATTGAAGCCTGCTCGCCCTCCTGTGAGACTCTTGTTCTAGTCACACATCTGTAAATAAC
CTTGAGATAACAGATGGGAAGAAACCTGATTGATGCTGGAAGGACCTATCATAATAGGCTGTGG
ACTGACTTGCCACAAGTTTGTGCATTTAGTGTGTTCCTTTTACTTTTTGATACTGTGTTGTATG
AAACACTTTTTTCCTCTGACTTGGGTTTTGTTTTGTTGTATTGTTTGAGGTGGGTTTTGGTTTT
TGATTTTTTTTTTTTTTTCCTTTGCCCAGACTTATCTTTGAACACAAATGTGTTGGCCTTATGG
CTAGTATACCCTTTTCTCGCCTCTGCCTCCCCCTCACCTGTCACATACTTTGACATTCTAACAT
TTTTTCTGTTCATCTCTGTGCCCCCATGAAAAAGTCCCAGAAAGAGCCCTTCGGTGTTCCTCCT
TAATGTGTAGGTTTATGAGATATAGTTTTGCATCATTTTTAATAGCCTCCTTTAGAGGCTTTTA
AAATCTGGAGCTCAAAAATGCATTCTGCCACATTGATGTTTTTAGTATGGTAAATGAGGAACCT
TGACATAGCTACAGGGCCACCTAACAGGTTACACCTGGTAGCTCTGATTTGATTATGGGTATCA
CAGTGTACATTTGCACCACATAAGCAATATGCTGGTTTGGTATGTGCACTTTCTACCCTGGAAT
GGGACTTAAAAACTTTCCTCTTGGCTTTGCATCATATCCAAGGGGTACTTTGGGGTTGGCTTAC
GCCTGCAAAAGGACAGAGGAAGGCCATTTGGTTTGGCAGATGCTTCAGAAGGGAAAGGGCTGGA
AAATGATGGCAGGTGTCTGGTGGGAAGGATCAGAAAATATCCCTGCTGAGATGCTATTATCCCT
GTGTTTATACTGAGACTAGTCTTGGGCTTCTCCATTCATTGGTTTTGTTTGACCCTCATCTTAT
TCCCCTTGAAGGTTTAGTTAAGTTCAGCCGTATTCTGTCAAGTGTTCCAGTGGAAGCTTTTGTT
TCTGGTTGATTATAACAAGAAATATGTTCTCTCAAATCCA

hide sequence

RefSeq Acc Id:

XM_005663349 ⟹ XP_005663406

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI

Sequence:

show sequence

TTGGGCCGCTCCCACGGCATATGGAGGTTCCCAGGCTAGGGGTTGAATCAGAGGTGCAGCCACC
TGGCCTACGCCAGAGCCACAGCAACGCTGGATCCGAGCCGCGTCTGCAACCTACACCACAGCTC
ACAGCAATGCCGGATCGTTAACCCACTGAGCAAGGCTAGGGATCGAACCCGCAACCTCATGGTT
CCTAGTTGGGTTCCTTAACCACTGCGCCACGACGGGAACTCCCATCTGAGCCTTTTATTGTGTG
CCCAGGTATAAGGAAAATGCCATATAGGTCTGCATCAAAATCCACATGGAAGCTAGATGGAGGG
AGAAGACATTGGAATAGGTTGCGGGGACGCAAAGCTTCCCCCAAATAAGAATTTAACAATCTTC
AGGCCAAATTGGGAAGGGAAGTGAAGAGAAAAATATGGACGGGCAGTGGTGCGTGGTGCAGGAT
CCAGTGAGGTGTGCTCCCTGCACTGGTCCCCAGGTGCGTTTATGGCAACCCACAACTCTAAAAG
GGGCGTATGCTGAGGGGGGAGCCAGCGCAAATTACACCGGCCCGGTGGCTCTCGGAAGAAAGAC
CGAGTCATGTCGCGTAAAGAATTTTAGTCGGTCTGCCTTAGCTTTAGGGGTGGAGGGACCCGCA
ATGAAATACGAACTTCTTTTCTTAAGAGGACCAAATCCGCCTTGAACGTCCCAAATCACCAACT
TGCAGCCGCCTTAAAACCCAAGAGAGAATATATTGGCCACGCCCCTTCCCGGGTGGGGCTCGGA
GTGTAATACAGCCTAAAGCCCCGCCTTTTCCCTGGAGCTCCGCCTCATCCCCCGCGCAGGCGTA
ACACAAATTTTCCCGCCTCCTGCGCTGTGCGCAGACCTGACGTCTGACGTAATGGCGTCGACGC
CATTTTAGCCGGTCCCATTCCGCACTGGGCGTGGCGGCCATTTTGTTTTGGAGAGCGAGCGGGA
GTTGGCGGCAGCGGCTGTGGTGAAAGGCAGGAAAGGGCACGCCGGGCGAGCAGGCGAACCGGCC
GACCGGACAGCCACCCAGCATCAACGAACTAACCTAGCATTCTACCGTTTAACACATACAACCA
ACCGCCCACCAAGTTAATCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGCCCCCGGCCAG
CCTGTCGCAGCCGTGGTGGCAACCCCGGGAGGAGCACTGGCGTCCGTTTCCTTCGATTCTCGGG
ATTTGAAGATGGCTGCACAGTCAGCACCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCT
AAATGAGCGCTTTACTAATATGCTGAAGAACAAACAACCGATGCCAGTGAATATTCGGGCTTCG
ATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATA
GACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGCCTGGGTAAGAGTAA
CATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAATCGGAGGACGAGGC
CTGCCCATTATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCACAAGAACCC
TACTTAGGGGCGGGATGTCGCTCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCC
CCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAGGGGGCCTAGGG
CGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGGCCGGGGAAGAG
GGGGCTTTGGAGGCCGAGGCCGTGGACGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTACT
GACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAAAGGACACTTGGAT
GCTGAGTTGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATTGAAGCCTGCTCGCCC
TCCTGTGAGACTCTTGTTCTAGTCACACATCTGTAAATAACCTTGAGATAACAGATGGGAAGAA
ACCTGATTGATGCTGGAAGGACCTATCATAATAGGCTGTGGACTGACTTGCCACAAGTTTGTGC
ATTTAGTGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAACACTTTTTTCCTCTGACTTG
GGTTTTGTTTTGTTGTATTGTTTGAGGTGGGTTTTGGTTTTTGATTTTTTTTTTTTTTTCCTTT
GCCCAGACTTATCTTTGAACACAAATGTGTTGGCCTTATGGCTAGTATACCCTTTTCTCGCCTC
TGCCTCCCCCTCACCTGTCACATACTTTGACATTCTAACATTTTTTCTGTTCATCTCTGTGCCC
CCATGAAAAAGTCCCAGAAAGAGCCCTTCGGTGTTCCTCCTTAATGTGTAGGTTTATGAGATAT
AGTTTTGCATCATTTTTAATAGCCTCCTTTAGAGGCTTTTAAAATCTGGAGCTCAAAAATGCAT
TCTGCCACATTGATGTTTTTAGTATGGTAAATGAGGAACCTTGACATAGCTACAGGGCCACCTA
ACAGGTTACACCTGGTAGCTCTGATTTGATTATGGGTATCACAGTGTACATTTGCACCACATAA
GCAATATGCTGGTTTGGTATGTGCACTTTCTACCCTGGAATGGGACTTAAAAACTTTCCTCTTG
GCTTTGCATCATATCCAAGGGGTACTTTGGGGTTGGCTTACGCCTGCAAAAGGACAGAGGAAGG
CCATTTGGTTTGGCAGATGCTTCAGAAGGGAAAGGGCTGGAAAATGATGGCAGGTGTCTGGTGG
GAAGGATCAGAAAATATCCCTGCTGAGATGCTATTATCCCTGTGTTTATACTGAGACTAGTCTT
GGGCTTCTCCATTCATTGGTTTTGTTTGACCCTCATCTTATTCCCCTTGAAGGTTTAGTTAAGT
TCAGCCGTATTCTGTCAAGTGTTCCAGTGGAAGCTTTTGTTTCTGGTTGATTATAACAAGAAAT
ATGTTCTCTCAAATCCA

hide sequence

RefSeq Acc Id:

XM_005663350 ⟹ XP_005663407

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI

Sequence:

show sequence

TTGGGCCGCTCCCACGGCATATGGAGGTTCCCAGGCTAGGGGTTGAATCAGAGGTGCAGCCACC
TGGCCTACGCCAGAGCCACAGCAACGCTGGATCCGAGCCGCGTCTGCAACCTACACCACAGCTC
ACAGCAATGCCGGATCGTTAACCCACTGAGCAAGGCTAGGGATCGAACCCGCAACCTCATGGTT
CCTAGTTGGGTTCCTTAACCACTGCGCCACGACGGGAACTCCCATCTGAGCCTTTTATTGTGTG
CCCAGGTATAAGGAAAATGCCATATAGGTCTGCATCAAAATCCACATGGAAGCTAGATGGAGGG
AGAAGACATTGGAATAGGTTGCGGGGACGCAAAGCTTCCCCCAAATAAGAATTTAACAATCTTC
AGGCCAAATTGGGAAGGGAAGTGAAGAGAAAAATATGGACGGGCAGTGGTGCGTGGTGCAGGAT
CCAGTGAGGTGTGCTCCCTGCACTGGTCCCCAGGTGCGTTTATGGCAACCCACAACTCTAAAAG
GGGCGTATGCTGAGGGGGGAGCCAGCGCAAATTACACCGGCCCGGTGGCTCTCGGAAGAAAGAC
CGAGTCATGTCGCGTAAAGAATTTTAGTCGGTCTGCCTTAGCTTTAGGGGTGGAGGGACCCGCA
ATGAAATACGAACTTCTTTTCTTAAGAGGACCAAATCCGCCTTGAACGTCCCAAATCACCAACT
TGCAGCCGCCTTAAAACCCAAGAGAGAATATATTGGCCACGCCCCTTCCCGGGTGGGGCTCGGA
GTGTAATACAGCCTAAAGCCCCGCCTTTTCCCTGGAGCTCCGCCTCATCCCCCGCGCAGGCGTA
ACACAAATTTTCCCGCCTCCTGCGCTGTGCGCAGACCTGACGTCTGACGTAATGGCGTCGACGC
CATTTTAGCCGGTCCCATTCCGCACTGGGCGTGGCGGCCATTTTGTTTTGGAGAGCGAGCGGGA
GTTGGCGGCAGCGGCTGTGGTGAAAGGCAGGAAAGGGCACGCCGGGCGAGCAGGCGAACCGGCC
GACCGGACAGCCACCCAGCATCAACGAACTAACCTAGCATTCTACCGTTTAACACATACAACCA
ACCGCCCACCAAGTTAATCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGCCCCCGGCCAG
CCTGTCGCAGCCGTGGTGGCAACCCCGGGAGGAGCACTGGCGTCCGTTTCCTTCGATTCTCGGG
ATTTGAAGATGGCTGCACAGTCAGCACCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCT
AAATGAGCGCTTTACTAATATGCTGAAGAACAAACAACCGATGCCAGTGAATATTCGGGCTTCG
ATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATA
GACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGACTTTATATGCAAGTCCGGACAGTGGCTG
TGGAAGGATATGTCCAAGCTGTGGCTGGGCGTCTGGAGGGCGGTGCCATGCAACTAAGAGCTTA
AAGCAGCGCCTGGGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCA
GGGGAGCAATCGGAGGACGAGGCCTGCCCATTATCCAGAGAGGCTTGCCCAGAGGAGGACTACG
TGGGGGACGTGCCACAAGAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCGGGGTATGATA
GGCCGGGGAAGAGGGGGCTTTGGAGGCCGAGGCCGTGGACGTGGACGAGGGAGAGGTGCCCTTG
CTCGCCCTGTACTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAA
AGGACACTTGGATGCTGAGTTGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATTGA
AGCCTGCTCGCCCTCCTGTGAGACTCTTGTTCTAGTCACACATCTGTAAATAACCTTGAGATAA
CAGATGGGAAGAAACCTGATTGATGCTGGAAGGACCTATCATAATAGGCTGTGGACTGACTTGC
CACAAGTTTGTGCATTTAGTGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAACACTTTT
TTCCTCTGACTTGGGTTTTGTTTTGTTGTATTGTTTGAGGTGGGTTTTGGTTTTTGATTTTTTT
TTTTTTTTCCTTTGCCCAGACTTATCTTTGAACACAAATGTGTTGGCCTTATGGCTAGTATACC
CTTTTCTCGCCTCTGCCTCCCCCTCACCTGTCACATACTTTGACATTCTAACATTTTTTCTGTT
CATCTCTGTGCCCCCATGAAAAAGTCCCAGAAAGAGCCCTTCGGTGTTCCTCCTTAATGTGTAG
GTTTATGAGATATAGTTTTGCATCATTTTTAATAGCCTCCTTTAGAGGCTTTTAAAATCTGGAG
CTCAAAAATGCATTCTGCCACATTGATGTTTTTAGTATGGTAAATGAGGAACCTTGACATAGCT
ACAGGGCCACCTAACAGGTTACACCTGGTAGCTCTGATTTGATTATGGGTATCACAGTGTACAT
TTGCACCACATAAGCAATATGCTGGTTTGGTATGTGCACTTTCTACCCTGGAATGGGACTTAAA
AACTTTCCTCTTGGCTTTGCATCATATCCAAGGGGTACTTTGGGGTTGGCTTACGCCTGCAAAA
GGACAGAGGAAGGCCATTTGGTTTGGCAGATGCTTCAGAAGGGAAAGGGCTGGAAAATGATGGC
AGGTGTCTGGTGGGAAGGATCAGAAAATATCCCTGCTGAGATGCTATTATCCCTGTGTTTATAC
TGAGACTAGTCTTGGGCTTCTCCATTCATTGGTTTTGTTTGACCCTCATCTTATTCCCCTTGAA
GGTTTAGTTAAGTTCAGCCGTATTCTGTCAAGTGTTCCAGTGGAAGCTTTTGTTTCTGGTTGAT
TATAACAAGAAATATGTTCTCTCAAATCCA

hide sequence

RefSeq Acc Id:

XM_021088534 ⟹ XP_020944193

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI

Sequence:

show sequence

TTGGGCCGCTCCCACGGCATATGGAGGTTCCCAGGCTAGGGGTTGAATCAGAGGTGCAGCCACC
TGGCCTACGCCAGAGCCACAGCAACGCTGGATCCGAGCCGCGTCTGCAACCTACACCACAGCTC
ACAGCAATGCCGGATCGTTAACCCACTGAGCAAGGCTAGGGATCGAACCCGCAACCTCATGGTT
CCTAGTTGGGTTCCTTAACCACTGCGCCACGACGGGAACTCCCATCTGAGCCTTTTATTGTGTG
CCCAGGTATAAGGAAAATGCCATATAGGTCTGCATCAAAATCCACATGGAAGCTAGATGGAGGG
AGAAGACATTGGAATAGGTTGCGGGGACGCAAAGCTTCCCCCAAATAAGAATTTAACAATCTTC
AGGCCAAATTGGGAAGGGAAGTGAAGAGAAAAATATGGACGGGCAGTGGTGCGTGGTGCAGGAT
CCAGTGAGGTGTGCTCCCTGCACTGGTCCCCAGGTGCGTTTATGGCAACCCACAACTCTAAAAG
GGGCGTATGCTGAGGGGGGAGCCAGCGCAAATTACACCGGCCCGGTGGCTCTCGGAAGAAAGAC
CGAGTCATGTCGCGTAAAGAATTTTAGTCGGTCTGCCTTAGCTTTAGGGGTGGAGGGACCCGCA
ATGAAATACGAACTTCTTTTCTTAAGAGGACCAAATCCGCCTTGAACGTCCCAAATCACCAACT
TGCAGCCGCCTTAAAACCCAAGAGAGAATATATTGGCCACGCCCCTTCCCGGGTGGGGCTCGGA
GTGTAATACAGCCTAAAGCCCCGCCTTTTCCCTGGAGCTCCGCCTCATCCCCCGCGCAGGCGTA
ACACAAATTTTCCCGCCTCCTGCGCTGTGCGCAGACCTGACGTCTGACGTAATGGCGTCGACGC
CATTTTAGCCGGTCCCATTCCGCACTGGGCGTGGCGGCCATTTTGTTTTGGAGAGCGAGCGGGA
GTTGGCGGCAGCGGCTGTGGTGAAAGGCAGGAAAGGGCACGCCGGGCGAGCAGGCGAACCGGCC
GACCGGACAGCCACCCAGCATCAACGAACTAACCTAGCATTCTACCGTTTAACACATACAACCA
ACCGCCCACCAAGTTAATCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGCCCCCGGCCAG
CCTGTCGCAGCCGTGGTGGCAACCCCGGGAGGAGCACTGGCGTCCGTTTCCTTCGATTCTCGGG
ATTTGAAGATGGCTGCACAGTCAGCACCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCT
AAATGAGCGCTTTACTAATATGCTGAAGAACAAACAACCGATGCCAGTGAATATTCGGGCTTCG
ATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATA
GACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGACTTTATATGCAAGTCCGGACAGTGGCTG
TGGAAGGATATGTCCAAGCTGTGGCTGGGCGTCTGGAGGGCGGTGCCATGCAACTAGCTTAAAG
CAGCGCCTGGGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGG
GAGCAATCGGAGGACGAGGCCTGCCCATTATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGG
GGGACGTGCCACAAGAACCCTACTTAGGGGCGGGATGTCGCTCCGAGGTCAAAACCTGCTCCGA
GGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTC
CTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGG
TATGATAGGCCGGGGAAGAGGGGGCTTTGGAGGCCGAGGCCGTGGACGTGGACGAGGGAGAGGT
GCCCTTGCTCGCCCTGTACTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGA
AAACTAAAGGACACTTGGATGCTGAGTTGGATGCCTACATGGCACAGACAGATCCTGAAACCAA
TGATTGAAGCCTGCTCGCCCTCCTGTGAGACTCTTGTTCTAGTCACACATCTGTAAATAACCTT
GAGATAACAGATGGGAAGAAACCTGATTGATGCTGGAAGGACCTATCATAATAGGCTGTGGACT
GACTTGCCACAAGTTTGTGCATTTAGTGTGTTCCTTTTACTTTTTGATACTGTGTTGTATGAAA
CACTTTTTTCCTCTGACTTGGGTTTTGTTTTGTTGTATTGTTTGAGGTGGGTTTTGGTTTTTGA
TTTTTTTTTTTTTTTCCTTTGCCCAGACTTATCTTTGAACACAAATGTGTTGGCCTTATGGCTA
GTATACCCTTTTCTCGCCTCTGCCTCCCCCTCACCTGTCACATACTTTGACATTCTAACATTTT
TTCTGTTCATCTCTGTGCCCCCATGAAAAAGTCCCAGAAAGAGCCCTTCGGTGTTCCTCCTTAA
TGTGTAGGTTTATGAGATATAGTTTTGCATCATTTTTAATAGCCTCCTTTAGAGGCTTTTAAAA
TCTGGAGCTCAAAAATGCATTCTGCCACATTGATGTTTTTAGTATGGTAAATGAGGAACCTTGA
CATAGCTACAGGGCCACCTAACAGGTTACACCTGGTAGCTCTGATTTGATTATGGGTATCACAG
TGTACATTTGCACCACATAAGCAATATGCTGGTTTGGTATGTGCACTTTCTACCCTGGAATGGG
ACTTAAAAACTTTCCTCTTGGCTTTGCATCATATCCAAGGGGTACTTTGGGGTTGGCTTACGCC
TGCAAAAGGACAGAGGAAGGCCATTTGGTTTGGCAGATGCTTCAGAAGGGAAAGGGCTGGAAAA
TGATGGCAGGTGTCTGGTGGGAAGGATCAGAAAATATCCCTGCTGAGATGCTATTATCCCTGTG
TTTATACTGAGACTAGTCTTGGGCTTCTCCATTCATTGGTTTTGTTTGACCCTCATCTTATTCC
CCTTGAAGGTTTAGTTAAGTTCAGCCGTATTCTGTCAAGTGTTCCAGTGGAAGCTTTTGTTTCT
GGTTGATTATAACAAGAAATATGTTCTCTCAAATCCA

hide sequence

RefSeq Acc Id:

XM_021088536 ⟹ XP_020944195

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI

Sequence:

show sequence

TTGGGCCGCTCCCACGGCATATGGAGGTTCCCAGGCTAGGGGTTGAATCAGAGGTGCAGCCACC
TGGCCTACGCCAGAGCCACAGCAACGCTGGATCCGAGCCGCGTCTGCAACCTACACCACAGCTC
ACAGCAATGCCGGATCGTTAACCCACTGAGCAAGGCTAGGGATCGAACCCGCAACCTCATGGTT
CCTAGTTGGGTTCCTTAACCACTGCGCCACGACGGGAACTCCCATCTGAGCCTTTTATTGTGTG
CCCAGGTATAAGGAAAATGCCATATAGGTCTGCATCAAAATCCACATGGAAGCTAGATGGAGGG
AGAAGACATTGGAATAGGTTGCGGGGACGCAAAGCTTCCCCCAAATAAGAATTTAACAATCTTC
AGGCCAAATTGGGAAGGGAAGTGAAGAGAAAAATATGGACGGGCAGTGGTGCGTGGTGCAGGAT
CCAGTGAGGTGTGCTCCCTGCACTGGTCCCCAGGTGCGTTTATGGCAACCCACAACTCTAAAAG
GGGCGTATGCTGAGGGGGGAGCCAGCGCAAATTACACCGGCCCGGTGGCTCTCGGAAGAAAGAC
CGAGTCATGTCGCGTAAAGAATTTTAGTCGGTCTGCCTTAGCTTTAGGGGTGGAGGGACCCGCA
ATGAAATACGAACTTCTTTTCTTAAGAGGACCAAATCCGCCTTGAACGTCCCAAATCACCAACT
TGCAGCCGCCTTAAAACCCAAGAGAGAATATATTGGCCACGCCCCTTCCCGGGTGGGGCTCGGA
GTGTAATACAGCCTAAAGCCCCGCCTTTTCCCTGGAGCTCCGCCTCATCCCCCGCGCAGGCGTA
ACACAAATTTTCCCGCCTCCTGCGCTGTGCGCAGACCTGACGTCTGACGTAATGGCGTCGACGC
CATTTTAGCCGGTCCCATTCCGCACTGGGCGTGGCGGCCATTTTGTTTTGGAGAGCGAGCGGGA
GTTGGCGGCAGCGGCTGTGGTGAAAGGCAGGAAAGGGCACGCCGGGCGAGCAGGCGAACCGGCC
GACCGGACAGCCACCCAGCATCAACGAACTAACCTAGCATTCTACCGTTTAACACATACAACCA
ACCGCCCACCAAGTTAATCCGAGCCCCTCCACCGTCAACTCAGGTTCGGCCGGCCCCCGGCCAG
CCTGTCGCAGCCGTGGTGGCAACCCCGGGAGGAGCACTGGCGTCCGTTTCCTTCGATTCTCGGG
ATTTGAAGATGGCTGCACAGTCAGCACCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCT
AAATGAGCGCTTTACTAATATGCTGAAGAACAAACAACCGATGCCAGTGAATATTCGGGCTTCG
ATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATA
GACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGCCTGGGTAAGAGTAA
CATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAATCGGAGGACGAGGC
CTGCCCATTATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCACAAGAACCC
TACTTAGGGGCGGGATGTCGCTCCGAGGTCGGGGTATGATAGGCCGGGGAAGAGGGGGCTTTGG
AGGCCGAGGCCGTGGACGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTACTGACCAAGGAG
CAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAAAGGACACTTGGATGCTGAGTTGG
ATGCCTACATGGCACAGACAGATCCTGAAACCAATGATTGAAGCCTGCTCGCCCTCCTGTGAGA
CTCTTGTTCTAGTCACACATCTGTAAATAACCTTGAGATAACAGATGGGAAGAAACCTGATTGA
TGCTGGAAGGACCTATCATAATAGGCTGTGGACTGACTTGCCACAAGTTTGTGCATTTAGTGTG
TTCCTTTTACTTTTTGATACTGTGTTGTATGAAACACTTTTTTCCTCTGACTTGGGTTTTGTTT
TGTTGTATTGTTTGAGGTGGGTTTTGGTTTTTGATTTTTTTTTTTTTTTCCTTTGCCCAGACTT
ATCTTTGAACACAAATGTGTTGGCCTTATGGCTAGTATACCCTTTTCTCGCCTCTGCCTCCCCC
TCACCTGTCACATACTTTGACATTCTAACATTTTTTCTGTTCATCTCTGTGCCCCCATGAAAAA
GTCCCAGAAAGAGCCCTTCGGTGTTCCTCCTTAATGTGTAGGTTTATGAGATATAGTTTTGCAT
CATTTTTAATAGCCTCCTTTAGAGGCTTTTAAAATCTGGAGCTCAAAAATGCATTCTGCCACAT
TGATGTTTTTAGTATGGTAAATGAGGAACCTTGACATAGCTACAGGGCCACCTAACAGGTTACA
CCTGGTAGCTCTGATTTGATTATGGGTATCACAGTGTACATTTGCACCACATAAGCAATATGCT
GGTTTGGTATGTGCACTTTCTACCCTGGAATGGGACTTAAAAACTTTCCTCTTGGCTTTGCATC
ATATCCAAGGGGTACTTTGGGGTTGGCTTACGCCTGCAAAAGGACAGAGGAAGGCCATTTGGTT
TGGCAGATGCTTCAGAAGGGAAAGGGCTGGAAAATGATGGCAGGTGTCTGGTGGGAAGGATCAG
AAAATATCCCTGCTGAGATGCTATTATCCCTGTGTTTATACTGAGACTAGTCTTGGGCTTCTCC
ATTCATTGGTTTTGTTTGACCCTCATCTTATTCCCCTTGAAGGTTTAGTTAAGTTCAGCCGTAT
TCTGTCAAGTGTTCCAGTGGAAGCTTTTGTTTCTGGTTGATTATAACAAGAAATATGTTCTCTC
AAATCCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001230197	(Get FASTA)	NCBI Sequence Viewer
	XP_005663405	(Get FASTA)	NCBI Sequence Viewer
	XP_005663406	(Get FASTA)	NCBI Sequence Viewer
	XP_005663407	(Get FASTA)	NCBI Sequence Viewer
	XP_020944193	(Get FASTA)	NCBI Sequence Viewer
	XP_020944195	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ACJ38128	(Get FASTA)	NCBI Sequence Viewer
	AEJ36337	(Get FASTA)	NCBI Sequence Viewer
	AEJ91536	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000021462
	ENSSSCP00000021462.4
	ENSSSCP00000029931
	ENSSSCP00000029931.3
	ENSSSCP00000042306.3
	ENSSSCP00000047977
	ENSSSCP00000047977.2
	ENSSSCP00000066809.2
	ENSSSCP00015012320.1
	ENSSSCP00015012637.1
	ENSSSCP00015012676.1
	ENSSSCP00025011434.1
	ENSSSCP00025011461.1
	ENSSSCP00025011470.1
	ENSSSCP00025011476.1
	ENSSSCP00025011481.1
	ENSSSCP00030037139.1
	ENSSSCP00030037192.1
	ENSSSCP00030037203.1
	ENSSSCP00035047019.1
	ENSSSCP00035047035.1
	ENSSSCP00035047053.1
	ENSSSCP00035047073.1
	ENSSSCP00035047128.1
	ENSSSCP00040017586.1
	ENSSSCP00040017698.1
	ENSSSCP00040017712.1
	ENSSSCP00045040352.1
	ENSSSCP00045040406.1
	ENSSSCP00045040454.1
	ENSSSCP00045040483.1
	ENSSSCP00045040528.1
	ENSSSCP00050006350.1
	ENSSSCP00050006356.1
	ENSSSCP00050006360.1
	ENSSSCP00050006364.1
	ENSSSCP00050006366.1
	ENSSSCP00055009850.1
	ENSSSCP00055009984.1
	ENSSSCP00055010011.1
	ENSSSCP00060040872.1
	ENSSSCP00060040882.1
	ENSSSCP00060040904.1
	ENSSSCP00060040920.1
	ENSSSCP00060040958.1
	ENSSSCP00065046623.1
	ENSSSCP00070047694.1
	ENSSSCP00070047696.1
	ENSSSCP00070047697.1
	ENSSSCP00070047698.1

RefSeq Acc Id:	XP_020944195 ⟸ XM_021088536
- Peptide Label:	isoform X5
- UniProtKB:	A0A4X1W2F3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPS VQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLR GGMSLRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAY MAQTDPETND hide sequence

RefSeq Acc Id:	XP_005663406 ⟸ XM_005663349
- Peptide Label:	isoform X3
- UniProtKB:	A0A288CFT9 (UniProtKB/TrEMBL), A0A8D1PZT9 (UniProtKB/TrEMBL), K7GPW5 (UniProtKB/TrEMBL), A0A8D2A6A5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPS VQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLR GGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGF GGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND hide sequence

RefSeq Acc Id:	XP_020944193 ⟸ XM_021088534
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1J2G7 (UniProtKB/TrEMBL), A0A8D0N5G1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPS VQAALKLKQTLYASPDSGCGRICPSCGWASGGRCHATSLKQRLGKSNIQARLGRPIGALARGAI GGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGR GGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTK GHLDAELDAYMAQTDPETND hide sequence

RefSeq Acc Id:	XP_005663407 ⟸ XM_005663350
- Peptide Label:	isoform X4
- UniProtKB:	F1SFU9 (UniProtKB/TrEMBL), A0A8D1E7E3 (UniProtKB/TrEMBL), F8UN40 (UniProtKB/TrEMBL), A0A8D2BSD3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPS VQAALKLKQTLYASPDSGCGRICPSCGWASGGRCHATKSLKQRLGKSNIQARLGRPIGALARGA IGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGRGMIGRGRGGFGGRGRGRGRGRGALARP VLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND hide sequence

RefSeq Acc Id:	XP_005663405 ⟸ XM_005663348
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1JZ32 (UniProtKB/TrEMBL), A0A287AV43 (UniProtKB/TrEMBL), A0A8D0LKY0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPS VQAALKLKQTLYASPDSGCGRICPSCGWASGGRCHATKSLKQRLGKSNIQARLGRPIGALARGA IGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPG RGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKT KGHLDAELDAYMAQTDPETND hide sequence

RefSeq Acc Id:

NP_001230197 ⟸ NM_001243268

- UniProtKB:

F8J1Q2 (UniProtKB/TrEMBL), A0A8D1WPF8 (UniProtKB/TrEMBL), A0A8D2A6A5 (UniProtKB/TrEMBL), A0A8D1J492 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIRASMQQQQQLASARNRRLAQQMENRPS
VQAALKLKQKSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLL
RGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG
FGGRGRGRGRGRGALARPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND

hide sequence

Ensembl Acc Id:

ENSSSCP00000042306 ⟸ ENSSSCT00000039921

Ensembl Acc Id:

ENSSSCP00000066809 ⟸ ENSSSCT00000074618

Ensembl Acc Id:

ENSSSCP00000047977 ⟸ ENSSSCT00000034019

Ensembl Acc Id:

ENSSSCP00000021462 ⟸ ENSSSCT00000030235

Ensembl Acc Id:

ENSSSCP00000029931 ⟸ ENSSSCT00000033082

Protein Domains

Chromatin target of PRMT1 protein C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000022107	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015023451	UniProtKB/TrEMBL
	ENSSSCG00025019897	UniProtKB/TrEMBL
	ENSSSCG00030058039	UniProtKB/TrEMBL
	ENSSSCG00035079277	UniProtKB/TrEMBL
	ENSSSCG00040031252	UniProtKB/TrEMBL
	ENSSSCG00045033669	UniProtKB/TrEMBL
	ENSSSCG00050011553	UniProtKB/TrEMBL
	ENSSSCG00055006457	UniProtKB/TrEMBL
	ENSSSCG00060069071	UniProtKB/TrEMBL
	ENSSSCG00065076062	UniProtKB/TrEMBL
	ENSSSCG00070027975	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000030235	ENTREZGENE
	ENSSSCT00000030235.4	UniProtKB/TrEMBL
	ENSSSCT00000033082	ENTREZGENE
	ENSSSCT00000033082.3	UniProtKB/TrEMBL
	ENSSSCT00000034019	ENTREZGENE
	ENSSSCT00000034019.3	UniProtKB/TrEMBL
	ENSSSCT00000039921.3	UniProtKB/TrEMBL
	ENSSSCT00000074618.2	UniProtKB/TrEMBL
	ENSSSCT00015031159.1	UniProtKB/TrEMBL
	ENSSSCT00015031870.1	UniProtKB/TrEMBL
	ENSSSCT00015031954.1	UniProtKB/TrEMBL
	ENSSSCT00025027004.1	UniProtKB/TrEMBL
	ENSSSCT00025027073.1	UniProtKB/TrEMBL
	ENSSSCT00025027099.1	UniProtKB/TrEMBL
	ENSSSCT00025027118.1	UniProtKB/TrEMBL
	ENSSSCT00025027132.1	UniProtKB/TrEMBL
	ENSSSCT00030080985.1	UniProtKB/TrEMBL
	ENSSSCT00030081094.1	UniProtKB/TrEMBL
	ENSSSCT00030081114.1	UniProtKB/TrEMBL
	ENSSSCT00035108499.1	UniProtKB/TrEMBL
	ENSSSCT00035108526.1	UniProtKB/TrEMBL
	ENSSSCT00035108560.1	UniProtKB/TrEMBL
	ENSSSCT00035108589.1	UniProtKB/TrEMBL
	ENSSSCT00035108691.1	UniProtKB/TrEMBL
	ENSSSCT00040042004.1	UniProtKB/TrEMBL
	ENSSSCT00040042299.1	UniProtKB/TrEMBL
	ENSSSCT00040042332.1	UniProtKB/TrEMBL
	ENSSSCT00045057689.1	UniProtKB/TrEMBL
	ENSSSCT00045057784.1	UniProtKB/TrEMBL
	ENSSSCT00045057872.1	UniProtKB/TrEMBL
	ENSSSCT00045057916.1	UniProtKB/TrEMBL
	ENSSSCT00045057982.1	UniProtKB/TrEMBL
	ENSSSCT00050015544.1	UniProtKB/TrEMBL
	ENSSSCT00050015568.1	UniProtKB/TrEMBL
	ENSSSCT00050015574.1	UniProtKB/TrEMBL
	ENSSSCT00050015581.1	UniProtKB/TrEMBL
	ENSSSCT00050015587.1	UniProtKB/TrEMBL
	ENSSSCT00055012504.1	UniProtKB/TrEMBL
	ENSSSCT00055012693.1	UniProtKB/TrEMBL
	ENSSSCT00055012729.1	UniProtKB/TrEMBL
	ENSSSCT00060094514.1	UniProtKB/TrEMBL
	ENSSSCT00060094538.1	UniProtKB/TrEMBL
	ENSSSCT00060094579.1	UniProtKB/TrEMBL
	ENSSSCT00060094614.1	UniProtKB/TrEMBL
	ENSSSCT00060094708.1	UniProtKB/TrEMBL
	ENSSSCT00065105095.1	UniProtKB/TrEMBL
	ENSSSCT00070056144.1	UniProtKB/TrEMBL
	ENSSSCT00070056145.1	UniProtKB/TrEMBL
	ENSSSCT00070056146.1	UniProtKB/TrEMBL
	ENSSSCT00070056147.1	UniProtKB/TrEMBL
InterPro	CTOP_PRMT1	UniProtKB/TrEMBL
	FoP_C	UniProtKB/TrEMBL
KEGG Report	ssc:100153064	UniProtKB/TrEMBL
NCBI Gene	CHTOP	ENTREZGENE
PANTHER	CHROMATIN TARGET OF PRMT1 PROTEIN	UniProtKB/TrEMBL
	CHROMATIN TARGET OF PRMT1 PROTEIN	UniProtKB/TrEMBL
Pfam	FoP_duplication	UniProtKB/TrEMBL
SMART	FoP_duplication	UniProtKB/TrEMBL
UniProt	A0A287AEJ5_PIG	UniProtKB/TrEMBL
	A0A287AV43	ENTREZGENE, UniProtKB/TrEMBL
	A0A288CFT9	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VVD9_PIG	UniProtKB/TrEMBL
	A0A4X1VZZ2_PIG	UniProtKB/TrEMBL
	A0A4X1W198_PIG	UniProtKB/TrEMBL
	A0A4X1W2F3	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2QXY4_PIG	UniProtKB/TrEMBL
	A0A8D0LKY0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0N5G1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0UKE7_PIG	UniProtKB/TrEMBL
	A0A8D1E7E3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1J2G7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1J492	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1JVE6_PIG	UniProtKB/TrEMBL
	A0A8D1JZ32	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1PZT9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1WPF8	ENTREZGENE
	A0A8D2A6A5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D2BSD3	ENTREZGENE, UniProtKB/TrEMBL
	F1SFU9	ENTREZGENE
	F8J1Q2	ENTREZGENE, UniProtKB/TrEMBL
	F8UN40	ENTREZGENE
	K7GPW5	ENTREZGENE
UniProt Secondary	A0A8D1WPF8	UniProtKB/TrEMBL
	F1SFU9	UniProtKB/TrEMBL
	F8UN40	UniProtKB/TrEMBL
	K7GPW5	UniProtKB/TrEMBL
VGNC ID	VGNC:86687	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar