CHTOP (chromatin target of PRMT1) - Rat Genome Database

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Gene: CHTOP (chromatin target of PRMT1) Homo sapiens
Analyze
Symbol: CHTOP
Name: chromatin target of PRMT1
RGD ID: 1607051
HGNC Page HGNC:24511
Description: Enables methyl-CpG binding activity. Involved in chromatin remodeling; mRNA export from nucleus; and positive regulation of helicase activity. Located in nuclear speck. Part of transcription export complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C10orf77; C1orf77; chromatin target of PRMT1 protein; DKFZp547E1010; FL-SRAG; FLJ40551; FOP; Friend of PRMT1 protein; MGC131924; MGC86949; pp7704; RP1-178F15.2; small arginine- and glycine-rich protein; small protein rich in arginine and glycine; SRAG; SRAG-3; SRAG-5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,634,066 - 153,646,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,633,982 - 153,646,306 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,606,542 - 153,618,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,873,149 - 151,884,603 (+)NCBINCBI36Build 36hg18NCBI36
Celera1126,677,559 - 126,689,013 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,969,964 - 124,982,321 (+)NCBIHuRef
CHM1_11155,002,435 - 155,014,759 (+)NCBICHM1_1
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear speck  (IBA,IDA,IEA)
nucleolus  (IEA)
nucleoplasm  (IEA,TAS)
nucleus  (IEA)
transcription export complex  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14667819   PMID:14702039   PMID:15342556   PMID:15489334   PMID:15498874   PMID:16710414   PMID:17081983   PMID:17361185   PMID:18029348   PMID:19254951   PMID:19322201  
PMID:19858291   PMID:20360068   PMID:20688955   PMID:21654808   PMID:21832049   PMID:21873635   PMID:22658674   PMID:22681889   PMID:22872859   PMID:23084401   PMID:23299939   PMID:23602568  
PMID:23826332   PMID:24163370   PMID:24457600   PMID:24711643   PMID:24981860   PMID:25284789   PMID:25416956   PMID:25662211   PMID:25852190   PMID:25959826   PMID:26186194   PMID:26496610  
PMID:26638075   PMID:26641092   PMID:27248496   PMID:27545878   PMID:27683223   PMID:27684187   PMID:28186131   PMID:28302793   PMID:28514442   PMID:28524877   PMID:28927264   PMID:28977666  
PMID:29128334   PMID:29229926   PMID:29298432   PMID:29395067   PMID:29467282   PMID:29509190   PMID:29568061   PMID:29676528   PMID:29721183   PMID:29802200   PMID:29844126   PMID:29845934  
PMID:30021884   PMID:30110629   PMID:30196744   PMID:30344098   PMID:30349055   PMID:30397336   PMID:30554943   PMID:30575818   PMID:30804502   PMID:30824926   PMID:30833792   PMID:30884312  
PMID:30890647   PMID:30910850   PMID:30948266   PMID:31048545   PMID:31091453   PMID:31180492   PMID:31343991   PMID:31363146   PMID:31519766   PMID:31527615   PMID:31586073   PMID:31751430  
PMID:31753913   PMID:31822558   PMID:32051553   PMID:32129710   PMID:32249768   PMID:32296183   PMID:32416067   PMID:32687490   PMID:32707033   PMID:32736653   PMID:32807901   PMID:32989256  
PMID:33022573   PMID:33643786   PMID:33644029   PMID:33658012   PMID:33742100   PMID:33838681   PMID:33916271   PMID:33961781   PMID:34079125   PMID:34189442   PMID:34349018   PMID:34431227  
PMID:34672954   PMID:34728620   PMID:34732716   PMID:34984976   PMID:35013218   PMID:35013556   PMID:35182466   PMID:35235311   PMID:35271311   PMID:35384245   PMID:35819319   PMID:35833506  
PMID:35850772   PMID:35915203   PMID:35944360   PMID:36057605   PMID:36215168   PMID:36244648   PMID:36273042   PMID:36339263   PMID:36517590   PMID:36526897   PMID:36604567   PMID:36774506  
PMID:37071682   PMID:37468549   PMID:37827155   PMID:38113892   PMID:38172120   PMID:38177924   PMID:38360978   PMID:39066279  


Genomics

Comparative Map Data
CHTOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,634,066 - 153,646,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,633,982 - 153,646,306 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,606,542 - 153,618,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,873,149 - 151,884,603 (+)NCBINCBI36Build 36hg18NCBI36
Celera1126,677,559 - 126,689,013 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,969,964 - 124,982,321 (+)NCBIHuRef
CHM1_11155,002,435 - 155,014,759 (+)NCBICHM1_1
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBIT2T-CHM13v2.0
Chtop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,405,846 - 90,417,400 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,406,263 - 90,416,805 (-)EnsemblGRCm39 Ensembl
GRCm38390,498,539 - 90,509,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,498,956 - 90,509,498 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,302,880 - 90,313,365 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,584,885 - 90,595,370 (-)NCBIMGSCv36mm8
Celera390,536,803 - 90,547,288 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.24NCBI
Chtop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,278,848 - 178,291,142 (-)NCBIGRCr8
mRatBN7.22175,981,266 - 175,992,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,981,271 - 175,992,748 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,121,379 - 183,132,881 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,143,642 - 181,155,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,743,986 - 175,755,485 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,887,850 - 189,900,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,887,857 - 189,899,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,318,314 - 209,330,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,772,001 - 182,783,476 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,722,109 - 182,733,582 (-)NCBI
Celera2169,916,772 - 169,928,245 (-)NCBICelera
Cytogenetic Map2q34NCBI
Chtop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545282,342 - 292,785 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545282,342 - 292,428 (+)NCBIChiLan1.0ChiLan1.0
CHTOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,186,853 - 96,198,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,922,882 - 95,934,368 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,989,920 - 129,002,242 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,617,934 - 132,630,654 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,617,934 - 132,630,654 (+)Ensemblpanpan1.1panPan2
CHTOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,418,902 - 43,428,012 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,419,707 - 43,427,856 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,368,614 - 43,377,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBIUU_Cfam_GSD_1.0
Chtop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,404,354 - 24,414,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,434,773 - 3,445,080 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,436,260 - 3,444,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHTOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,994,263 - 96,005,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,996,030 - 96,006,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,889,209 - 104,898,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHTOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,159,463 - 10,170,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,154,734 - 10,170,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,536,012 - 9,548,571 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chtop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,501,470 - 3,511,451 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,501,468 - 3,511,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHTOP
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q21.3(chr1:153641117-153752390)x3 copy number gain See cases [RCV000051530] Chr1:153641117..153752390 [GRCh38]
Chr1:153613593..153724866 [GRCh37]
Chr1:151880217..151991490 [NCBI36]
Chr1:1q21.3		 benign|uncertain significance|conflicting data from submitters
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2		 pathogenic
GRCh38/hg38 1q21.3(chr1:153641117-153752390)x3 copy number gain See cases [RCV000148158] Chr1:153641117..153752390 [GRCh38]
Chr1:153613593..153724866 [GRCh37]
Chr1:151880217..151991490 [NCBI36]
Chr1:1q21.3		 uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
Single allele duplication not provided [RCV000677956] Chr1:153615996..153724866 [GRCh37]
Chr1:1q21.3		 uncertain significance
GRCh37/hg19 1q21.3(chr1:150853044-154647786)x3 copy number gain not provided [RCV000684655] Chr1:150853044..154647786 [GRCh37]
Chr1:1q21.3		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1q21.3(chr1:153488723-153750339)x3 copy number gain not provided [RCV000749192] Chr1:153488723..153750339 [GRCh37]
Chr1:1q21.3		 benign
GRCh37/hg19 1q21.3(chr1:153061323-153904594)x3 copy number gain not provided [RCV001005141] Chr1:153061323..153904594 [GRCh37]
Chr1:1q21.3		 uncertain significance
GRCh37/hg19 1q21.3(chr1:153321482-153835605)x3 copy number gain not provided [RCV000847221] Chr1:153321482..153835605 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.526G>A (p.Gly176Arg) single nucleotide variant not specified [RCV004308294] Chr1:153643349 [GRCh38]
Chr1:153615825 [GRCh37]
Chr1:1q21.3		 uncertain significance
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44		 uncertain significance
NC_000001.10:g.(?_149895434)_(156851434_?)dup duplication Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency [RCV001958273]|Congenital neutropenia-myelofibrosis-nephromegaly syndrome [RCV001958271]|Kostmann syndrome [RCV003120769]|MHC class II deficiency [RCV001992607] Chr1:149895434..156851434 [GRCh37]
Chr1:1q21.2-23.1		 uncertain significance
NM_015607.4(CHTOP):c.550A>T (p.Met184Leu) single nucleotide variant not specified [RCV004107406] Chr1:153645072 [GRCh38]
Chr1:153617548 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.311G>C (p.Gly104Ala) single nucleotide variant not specified [RCV004131044] Chr1:153642337 [GRCh38]
Chr1:153614813 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.98C>T (p.Thr33Met) single nucleotide variant not specified [RCV004199767] Chr1:153638327 [GRCh38]
Chr1:153610803 [GRCh37]
Chr1:1q21.3		 likely benign
NM_015607.4(CHTOP):c.673T>A (p.Ser225Thr) single nucleotide variant not specified [RCV004155900] Chr1:153645195 [GRCh38]
Chr1:153617671 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.298A>G (p.Ile100Val) single nucleotide variant not specified [RCV004196845] Chr1:153642324 [GRCh38]
Chr1:153614800 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.506G>A (p.Arg169His) single nucleotide variant not specified [RCV004257164] Chr1:153643329 [GRCh38]
Chr1:153615805 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.547G>A (p.Gly183Ser) single nucleotide variant not specified [RCV004264383] Chr1:153645069 [GRCh38]
Chr1:153617545 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.623G>A (p.Arg208His) single nucleotide variant not specified [RCV004331235] Chr1:153645145 [GRCh38]
Chr1:153617621 [GRCh37]
Chr1:1q21.3		 uncertain significance
GRCh37/hg19 1q12-23.1(chr1:142535935-157648813)x3 copy number gain Chromosome 1q21.1 duplication syndrome [RCV003329522] Chr1:142535935..157648813 [GRCh37]
Chr1:1q12-23.1		 pathogenic
NM_015607.4(CHTOP):c.377T>C (p.Leu126Pro) single nucleotide variant not specified [RCV004343184] Chr1:153642403 [GRCh38]
Chr1:153614879 [GRCh37]
Chr1:1q21.3		 uncertain significance
GRCh37/hg19 1q21.3(chr1:153460453-153737619)x3 copy number gain not provided [RCV003484040] Chr1:153460453..153737619 [GRCh37]
Chr1:1q21.3		 uncertain significance
GRCh37/hg19 1q21.1-23.1(chr1:144368497-158992086)x3 copy number gain not specified [RCV003986717] Chr1:144368497..158992086 [GRCh37]
Chr1:1q21.1-23.1		 pathogenic
GRCh37/hg19 1q21.3(chr1:153354333-153703053)x3 copy number gain not specified [RCV003987106] Chr1:153354333..153703053 [GRCh37]
Chr1:1q21.3		 uncertain significance
GRCh37/hg19 1q21.1-23.1(chr1:146577511-157155587)x3 copy number gain not specified [RCV003987261] Chr1:146577511..157155587 [GRCh37]
Chr1:1q21.1-23.1		 pathogenic
NM_015607.4(CHTOP):c.305G>A (p.Gly102Glu) single nucleotide variant not specified [RCV004441713] Chr1:153642331 [GRCh38]
Chr1:153614807 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.329G>A (p.Arg110Lys) single nucleotide variant not specified [RCV004441714] Chr1:153642355 [GRCh38]
Chr1:153614831 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.579AGGCCG[4] (p.Gly204_Ala205insArgGly) microsatellite not provided [RCV003885023] Chr1:153645099..153645100 [GRCh38]
Chr1:153617575..153617576 [GRCh37]
Chr1:1q21.3		 likely benign
NM_015607.4(CHTOP):c.590G>A (p.Arg197Gln) single nucleotide variant not specified [RCV004441716] Chr1:153645112 [GRCh38]
Chr1:153617588 [GRCh37]
Chr1:1q21.3		 uncertain significance
NM_015607.4(CHTOP):c.371G>C (p.Arg124Thr) single nucleotide variant not specified [RCV004610611] Chr1:153642397 [GRCh38]
Chr1:153614873 [GRCh37]
Chr1:1q21.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2286
Count of miRNA genes:876
Interacting mature miRNAs:1044
Transcripts:ENST00000368686, ENST00000368687, ENST00000368690, ENST00000368694, ENST00000403433, ENST00000495554
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357381BW57_HBody weight QTL 57 (human)10.0001Body weightfat free mass after exercise training1140630236166630236Human

Markers in Region
STS-N47007  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,618,535 - 153,618,743UniSTSGRCh37
Build 361151,885,159 - 151,885,367RGDNCBI36
Celera1126,689,569 - 126,689,777RGD
Cytogenetic Map1q21.3UniSTS
HuRef1124,982,074 - 124,982,282UniSTS
GeneMap99-GB4 RH Map1538.71UniSTS
NCBI RH Map11169.3UniSTS
RH35847  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,618,023 - 153,618,161UniSTSGRCh37
Build 361151,884,647 - 151,884,785RGDNCBI36
Celera1126,689,057 - 126,689,195RGD
Cytogenetic Map1q21.3UniSTS
HuRef1124,981,562 - 124,981,700UniSTS
GeneMap99-GB4 RH Map1555.98UniSTS
NCBI RH Map11222.2UniSTS
RH78045  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,618,472 - 153,618,600UniSTSGRCh37
Build 361151,885,096 - 151,885,224RGDNCBI36
Celera1126,689,506 - 126,689,634RGD
Cytogenetic Map1q21.3UniSTS
HuRef1124,982,011 - 124,982,139UniSTS
GeneMap99-GB4 RH Map1552.5UniSTS
NCBI RH Map11095.6UniSTS
SHGC-2950  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,617,877 - 153,618,049UniSTSGRCh37
Build 361151,884,501 - 151,884,673RGDNCBI36
Celera1126,688,911 - 126,689,083RGD
Cytogenetic Map1q21.3UniSTS
HuRef1124,981,416 - 124,981,588UniSTS
WI-21724  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,617,993 - 153,618,260UniSTSGRCh37
Build 361151,884,617 - 151,884,884RGDNCBI36
Celera1126,689,027 - 126,689,294RGD
Cytogenetic Map1q21.3UniSTS
HuRef1124,981,532 - 124,981,799UniSTS
GeneMap99-GB4 RH Map1552.61UniSTS
Whitehead-RH Map1672.9UniSTS
NCBI RH Map11098.2UniSTS
D10S275  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map13q12.13UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map14q22-q24UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map6q24UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map3p25UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9q22UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic MapXp22.2-p22.1UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map20pter-q11.23UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.3UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map3q26.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11p14.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map6q24.3UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map6q12-q13UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2p14UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_030030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001206612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001244664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001317077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF261137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF318362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI929184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL050260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL162258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL512704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC120961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC120962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP375397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC387712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000368686   ⟹   ENSP00000357675
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,638,342 - 153,644,385 (+)Ensembl
Ensembl Acc Id: ENST00000368687   ⟹   ENSP00000357676
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,638,084 - 153,645,470 (+)Ensembl
Ensembl Acc Id: ENST00000368690   ⟹   ENSP00000357679
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,633,982 - 153,646,305 (+)Ensembl
Ensembl Acc Id: ENST00000368694   ⟹   ENSP00000357683
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,634,066 - 153,646,306 (+)Ensembl
Ensembl Acc Id: ENST00000403433   ⟹   ENSP00000385228
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,634,080 - 153,646,302 (+)Ensembl
Ensembl Acc Id: ENST00000495554
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,634,075 - 153,645,470 (+)Ensembl
Ensembl Acc Id: ENST00000614256   ⟹   ENSP00000484038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,633,982 - 153,646,305 (+)Ensembl
Ensembl Acc Id: ENST00000710369   ⟹   ENSP00000518236
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1153,634,066 - 153,646,306 (+)Ensembl
RefSeq Acc Id: NM_001206612   ⟹   NP_001193541
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,634,066 - 153,646,306 (+)NCBI
GRCh371153,606,458 - 153,618,782 (+)ENTREZGENE
HuRef1124,969,964 - 124,982,321 (+)ENTREZGENE
CHM1_11155,002,435 - 155,014,759 (+)NCBI
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001244664   ⟹   NP_001231593
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,634,066 - 153,646,306 (+)NCBI
GRCh371153,606,458 - 153,618,782 (+)NCBI
HuRef1124,969,964 - 124,982,321 (+)NCBI
CHM1_11155,002,435 - 155,014,759 (+)NCBI
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001317077   ⟹   NP_001304006
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,634,066 - 153,646,306 (+)NCBI
CHM1_11155,002,435 - 155,014,759 (+)NCBI
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBI
Sequence:
RefSeq Acc Id: NM_015607   ⟹   NP_056422
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,634,066 - 153,646,306 (+)NCBI
GRCh371153,606,458 - 153,618,782 (+)ENTREZGENE
Build 361151,873,149 - 151,884,603 (+)NCBI Archive
Celera1126,677,559 - 126,689,013 (+)RGD
HuRef1124,969,964 - 124,982,321 (+)ENTREZGENE
CHM1_11155,002,435 - 155,014,759 (+)NCBI
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017000993   ⟹   XP_016856482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,634,066 - 153,646,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054335899   ⟹   XP_054191874
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001193541 (Get FASTA)   NCBI Sequence Viewer  
  NP_001231593 (Get FASTA)   NCBI Sequence Viewer  
  NP_001304006 (Get FASTA)   NCBI Sequence Viewer  
  NP_056422 (Get FASTA)   NCBI Sequence Viewer  
  XP_016856482 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191874 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG44673 (Get FASTA)   NCBI Sequence Viewer  
  AAH02733 (Get FASTA)   NCBI Sequence Viewer  
  AAH59949 (Get FASTA)   NCBI Sequence Viewer  
  AAH70027 (Get FASTA)   NCBI Sequence Viewer  
  AAI08722 (Get FASTA)   NCBI Sequence Viewer  
  AAI20962 (Get FASTA)   NCBI Sequence Viewer  
  AAI20963 (Get FASTA)   NCBI Sequence Viewer  
  AAL55869 (Get FASTA)   NCBI Sequence Viewer  
  CAB43362 (Get FASTA)   NCBI Sequence Viewer  
  CAC21650 (Get FASTA)   NCBI Sequence Viewer  
  EAW53290 (Get FASTA)   NCBI Sequence Viewer  
  EAW53291 (Get FASTA)   NCBI Sequence Viewer  
  EAW53292 (Get FASTA)   NCBI Sequence Viewer  
  EAW53293 (Get FASTA)   NCBI Sequence Viewer  
  EAW53294 (Get FASTA)   NCBI Sequence Viewer  
  EAW53295 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000357675.1
  ENSP00000357676.1
  ENSP00000357679
  ENSP00000357679.4
  ENSP00000357683
  ENSP00000357683.3
  ENSP00000385228
  ENSP00000385228.1
  ENSP00000484038
  ENSP00000484038.1
  ENSP00000518236.1
GenBank Protein Q9Y3Y2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_056422   ⟸   NM_015607
- Peptide Label: isoform 1
- UniProtKB: Q9H034 (UniProtKB/Swiss-Prot),   Q9BUC5 (UniProtKB/Swiss-Prot),   Q8WYT9 (UniProtKB/Swiss-Prot),   Q6PB28 (UniProtKB/Swiss-Prot),   Q6NSM4 (UniProtKB/Swiss-Prot),   Q5T7Z0 (UniProtKB/Swiss-Prot),   Q5T7Y9 (UniProtKB/Swiss-Prot),   Q5T7Y8 (UniProtKB/Swiss-Prot),   Q2VPI9 (UniProtKB/Swiss-Prot),   Q0VAQ8 (UniProtKB/Swiss-Prot),   D3DV55 (UniProtKB/Swiss-Prot),   Q9H2L0 (UniProtKB/Swiss-Prot),   Q9Y3Y2 (UniProtKB/Swiss-Prot),   A0AA34QVV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001193541   ⟸   NM_001206612
- Peptide Label: isoform 2
- UniProtKB: A0AA34QVV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231593   ⟸   NM_001244664
- Peptide Label: isoform 3
- UniProtKB: A0A087X1B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001304006   ⟸   NM_001317077
- Peptide Label: isoform 4
- UniProtKB: Q9Y3Y2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016856482   ⟸   XM_017000993
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSP00000385228   ⟸   ENST00000403433
Ensembl Acc Id: ENSP00000484038   ⟸   ENST00000614256
Ensembl Acc Id: ENSP00000357683   ⟸   ENST00000368694
Ensembl Acc Id: ENSP00000357679   ⟸   ENST00000368690
Ensembl Acc Id: ENSP00000357675   ⟸   ENST00000368686
Ensembl Acc Id: ENSP00000357676   ⟸   ENST00000368687
RefSeq Acc Id: XP_054191874   ⟸   XM_054335899
- Peptide Label: isoform X1
Ensembl Acc Id: ENSP00000518236   ⟸   ENST00000710369
Protein Domains
Chromatin target of PRMT1 protein C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y3Y2-F1-model_v2 AlphaFold Q9Y3Y2 1-248 view protein structure

Promoters
RGD ID:6785066
Promoter ID:HG_KWN:5204
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid
Transcripts:ENST00000403433,   OTTHUMT00000089967,   OTTHUMT00000089969,   UC001FCN.1,   UC009WOI.1,   UC009WOJ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361151,872,999 - 151,873,499 (+)MPROMDB
RGD ID:6785324
Promoter ID:HG_KWN:5205
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:ENST00000368686,   ENST00000368690,   ENST00000392618,   UC001FCO.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361151,875,936 - 151,877,532 (+)MPROMDB
RGD ID:6857256
Promoter ID:EPDNEW_H1793
Type:initiation region
Name:CHTOP_1
Description:chromatin target of PRMT1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1794  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,634,080 - 153,634,140EPDNEW
RGD ID:6857258
Promoter ID:EPDNEW_H1794
Type:initiation region
Name:CHTOP_2
Description:chromatin target of PRMT1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1793  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,634,194 - 153,634,254EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24511 AgrOrtholog
COSMIC CHTOP COSMIC
Ensembl Genes ENSG00000160679 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000368686.1 UniProtKB/TrEMBL
  ENST00000368687.1 UniProtKB/TrEMBL
  ENST00000368690 ENTREZGENE
  ENST00000368690.7 UniProtKB/Swiss-Prot
  ENST00000368694 ENTREZGENE
  ENST00000368694.8 UniProtKB/Swiss-Prot
  ENST00000403433 ENTREZGENE
  ENST00000403433.5 UniProtKB/Swiss-Prot
  ENST00000614256 ENTREZGENE
  ENST00000614256.4 UniProtKB/TrEMBL
  ENST00000710369.1 UniProtKB/TrEMBL
GTEx ENSG00000160679 GTEx
HGNC ID HGNC:24511 ENTREZGENE
Human Proteome Map CHTOP Human Proteome Map
InterPro CTOP_PRMT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FoP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:26097 UniProtKB/Swiss-Prot
NCBI Gene 26097 ENTREZGENE
OMIM 614206 OMIM
PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/Swiss-Prot
  CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/Swiss-Prot
  CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/TrEMBL
  CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/TrEMBL
Pfam FoP_duplication UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142672526 PharmGKB
SMART FoP_duplication UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087X1B7 ENTREZGENE, UniProtKB/TrEMBL
  A0AA34QVV3 ENTREZGENE, UniProtKB/TrEMBL
  CHTOP_HUMAN UniProtKB/Swiss-Prot
  D3DV55 ENTREZGENE
  Q0VAQ8 ENTREZGENE
  Q2VPI9 ENTREZGENE
  Q5T7Y7_HUMAN UniProtKB/TrEMBL
  Q5T7Y8 ENTREZGENE
  Q5T7Y9 ENTREZGENE
  Q5T7Z0 ENTREZGENE
  Q6NSM4 ENTREZGENE
  Q6PB28 ENTREZGENE
  Q8WYT9 ENTREZGENE
  Q9BUC5 ENTREZGENE
  Q9H034 ENTREZGENE
  Q9H2L0 ENTREZGENE
  Q9Y3Y2 ENTREZGENE
  X6R700_HUMAN UniProtKB/TrEMBL
UniProt Secondary D3DV55 UniProtKB/Swiss-Prot
  Q0VAQ8 UniProtKB/Swiss-Prot
  Q2VPI9 UniProtKB/Swiss-Prot
  Q5T7Y8 UniProtKB/Swiss-Prot
  Q5T7Y9 UniProtKB/Swiss-Prot
  Q5T7Z0 UniProtKB/Swiss-Prot
  Q6NSM4 UniProtKB/Swiss-Prot
  Q6PB28 UniProtKB/Swiss-Prot
  Q8WYT9 UniProtKB/Swiss-Prot
  Q9BUC5 UniProtKB/Swiss-Prot
  Q9H034 UniProtKB/Swiss-Prot
  Q9H2L0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 CHTOP  chromatin target of PRMT1  C1orf77  chromosome 1 open reading frame 77  Symbol and/or name change 5135510 APPROVED