CHTOP (chromatin target of PRMT1) - Rat Genome Database

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Gene: CHTOP (chromatin target of PRMT1) Chlorocebus sabaeus
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Symbol: CHTOP
Name: chromatin target of PRMT1
RGD ID: 18753719
Description: ENCODES a protein that exhibits methyl-CpG binding (inferred); RNA binding (inferred); INVOLVED IN in utero embryonic development (ortholog); positive regulation of ATP-dependent activity (ortholog); positive regulation of helicase activity (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN nuclear speck (inferred); transcription export complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromatin target of PRMT1 protein; LOC103223954
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,159,463 - 10,170,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,154,734 - 10,170,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,536,012 - 9,548,571 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CHTOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,159,463 - 10,170,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,154,734 - 10,170,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,536,012 - 9,548,571 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CHTOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,634,066 - 153,646,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,633,982 - 153,646,306 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,606,542 - 153,618,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,873,149 - 151,884,603 (+)NCBINCBI36Build 36hg18NCBI36
Celera1126,677,559 - 126,689,013 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,969,964 - 124,982,321 (+)NCBIHuRef
CHM1_11155,002,435 - 155,014,759 (+)NCBICHM1_1
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBIT2T-CHM13v2.0
Chtop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,405,846 - 90,417,400 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,406,263 - 90,416,805 (-)EnsemblGRCm39 Ensembl
GRCm38390,498,539 - 90,509,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,498,956 - 90,509,498 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,302,880 - 90,313,365 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,584,885 - 90,595,370 (-)NCBIMGSCv36mm8
Celera390,536,803 - 90,547,288 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.24NCBI
Chtop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,278,848 - 178,291,142 (-)NCBIGRCr8
mRatBN7.22175,981,266 - 175,992,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,981,271 - 175,992,748 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,121,379 - 183,132,881 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,143,642 - 181,155,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,743,986 - 175,755,485 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,887,850 - 189,900,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,887,857 - 189,899,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,318,314 - 209,330,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,772,001 - 182,783,476 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,722,109 - 182,733,582 (-)NCBI
Celera2169,916,772 - 169,928,245 (-)NCBICelera
Cytogenetic Map2q34NCBI
Chtop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545282,342 - 292,785 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545282,342 - 292,428 (+)NCBIChiLan1.0ChiLan1.0
CHTOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,186,853 - 96,198,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,922,882 - 95,934,368 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,989,920 - 129,002,242 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,617,934 - 132,630,654 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,617,934 - 132,630,654 (+)Ensemblpanpan1.1panPan2
CHTOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,418,902 - 43,428,012 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,419,707 - 43,427,856 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,368,614 - 43,377,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBIUU_Cfam_GSD_1.0
Chtop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,404,354 - 24,414,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,434,773 - 3,445,080 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,436,260 - 3,444,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHTOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,994,263 - 96,005,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,996,030 - 96,006,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,889,209 - 104,898,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Chtop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,501,470 - 3,511,451 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,501,468 - 3,511,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHTOP
218 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000016667   ⟹   ENSCSAP00000016169
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2010,154,734 - 10,170,883 (-)Ensembl
RefSeq Acc Id: XM_007977054   ⟹   XP_007975245
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12010,159,463 - 10,170,949 (-)NCBI
Vero_WHO_p1.0NW_0236660389,536,012 - 9,548,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007977056   ⟹   XP_007975247
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12010,159,463 - 10,170,949 (-)NCBI
Vero_WHO_p1.0NW_0236660389,536,595 - 9,548,571 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007975245 (Get FASTA)   NCBI Sequence Viewer  
  XP_007975247 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016169
  ENSCSAP00000016169.1
RefSeq Acc Id: XP_007975247   ⟸   XM_007977056
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007975245   ⟸   XM_007977054
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S5N0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000016169   ⟸   ENSCSAT00000016667


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001862 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016667.1 UniProtKB/TrEMBL
InterPro CTOP_PRMT1 UniProtKB/TrEMBL
  FoP_C UniProtKB/TrEMBL
KEGG Report csab:103223954 UniProtKB/TrEMBL
NCBI Gene CHTOP ENTREZGENE
PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/TrEMBL
  CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/TrEMBL
Pfam FoP_duplication UniProtKB/TrEMBL
SMART FoP_duplication UniProtKB/TrEMBL
UniProt A0A0D9S5N0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 CHTOP  chromatin target of PRMT1  LOC103223954  chromatin target of PRMT1  Symbol and/or name change 5135510 APPROVED
2020-12-08 LOC103223954  chromatin target of PRMT1  CHTOP  chromatin target of PRMT1  Symbol and/or name change 5135510 APPROVED