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ONTOLOGY REPORT - ANNOTATIONS


Term:blastocyst development
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Accession:GO:0001824 term browser browse the term
Definition:The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS5, embryo ; EMAP:23', 'TS5, inner cell mass ; EMAP:24' and 'TS5, trophectoderm; EMAP:28'.
Synonyms:only_in_taxon: NCBITaxon:32525 ! Theria



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blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b1 ATPase Na+/K+ transporting subunit beta 1 acts_upstream_of_or_within ISO RGD MGI:1888635 NCBI chr13:76,786,580...76,807,096
Ensembl chr13:76,786,578...76,807,459
JBrowse link
G Bnip2 BCL2 interacting protein 2 acts_upstream_of_or_within ISO (MGI:3848119|PMID:19117032) RGD PMID:19117032 MGI:3848119 NCBI chr 8:70,640,436...70,661,782
Ensembl chr 8:70,640,445...70,675,590
JBrowse link
G Capn2 calpain 2 acts_upstream_of_or_within ISO MGI:3628453 (MGI:3620446|PMID:16433929) RGD PMID:16433929 MGI:3620446 NCBI chr13:94,150,244...94,200,969
Ensembl chr13:94,150,240...94,200,969
JBrowse link
G Cdk11b cyclin-dependent kinase 11B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3043373 (MGI:3041915|PMID:15060143)
Ensembl
RGD
PMID:15060143 GO_REF:0000107 MGI:3041915 NCBI chr 5:166,212,761...166,238,883
Ensembl chr 5:166,212,829...166,238,876
JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO MGI:1857928 (MGI:3578587|PMID:15788452) RGD PMID:15788452 MGI:3578587 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Dad1 defender against cell death 1 acts_upstream_of_or_within ISO MGI:2445490 (MGI:1858316|PMID:10748466) RGD PMID:10748466 MGI:1858316 NCBI chr15:27,677,285...27,697,275
Ensembl chr15:27,677,268...27,697,347
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO MGI:3497714 (MGI:3057099|PMID:15452149) RGD PMID:15452149 MGI:3057099 NCBI chr 1:185,617,469...185,696,476 JBrowse link
G Elf3 E74 like ETS transcription factor 3 acts_upstream_of_or_within ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr13:46,690,460...46,695,394
Ensembl chr13:46,690,466...46,695,481
JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase acts_upstream_of_or_within ISO MGI:4839753 (MGI:4839400|PMID:20858271) RGD PMID:20858271 MGI:4839400 NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:3579497 (MGI:3578587|PMID:15788452) RGD PMID:15788452 MGI:3578587 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr 1:85,890,562...85,894,025
Ensembl chr 1:85,890,559...85,893,431
JBrowse link
G G2e3 G2/M-phase specific E3 ubiquitin protein ligase acts_upstream_of_or_within ISO MGI:3808723 (MGI:3807157|PMID:18511420) RGD PMID:18511420 MGI:3807157 NCBI chr 6:68,763,847...68,795,305
Ensembl chr 6:68,764,185...68,793,924
JBrowse link
G Gdf9 growth differentiation factor 9 involved_in ISO (PMID:24313324) RGD PMID:24313324 NCBI chr10:37,589,200...37,599,970
Ensembl chr10:37,595,679...37,599,672
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO (MGI:3653309|PMID:16880268) RGD PMID:16880268 MGI:3653309 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:4868505|PMID:21079677)
UniProt
RGD
PMID:21079677 GO_REF:0000024 MGI:4868505 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383
JBrowse link
G Kpna7 karyopherin subunit alpha 7 acts_upstream_of_or_within ISO MGI:6108355 (MGI:5913752|PMID:20699224) RGD PMID:20699224 MGI:5913752 NCBI chr12:9,576,378...9,635,247
Ensembl chr12:9,576,378...9,612,833
JBrowse link
G Med21 mediator complex subunit 21 acts_upstream_of_or_within ISO MGI:2445456 (MGI:1345774|PMID:10500093) RGD PMID:10500093 MGI:1345774 NCBI chr 4:179,560,509...179,583,811
Ensembl chr 4:179,560,579...179,567,548
JBrowse link
G N4bp2l2 NEDD4 binding protein 2-like 2 acts_upstream_of_or_within ISO (MGI:3797340|PMID:18360097) RGD PMID:18360097 MGI:3797340 NCBI chr12:137,342...200,294
Ensembl chr12:103,590...197,784
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISS
ISO
GO_REF:0000024
(MGI:3694318|PMID:16728391)
UniProt
RGD
PMID:16728391 GO_REF:0000024 MGI:3694318 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Nek2 NIMA-related kinase 2 acts_upstream_of_or_within ISO (MGI:3848119|PMID:19117032) RGD PMID:19117032 MGI:3848119 NCBI chr13:103,405,818...103,419,063
Ensembl chr13:103,405,819...103,419,051
JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 involved_in ISO (PMID:12714744) RGD PMID:12714744 NCBI chr15:45,722,494...45,729,246
Ensembl chr15:45,722,400...45,729,726
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (PMID:21258368) RGD PMID:21258368 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 acts_upstream_of_or_within ISO MGI:2180548 (MGI:1860964|PMID:10945464) RGD PMID:10945464 MGI:1860964 NCBI chr 3:77,031,825...77,037,207
Ensembl chr 3:77,031,825...77,043,358
JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 acts_upstream_of_or_within ISO MGI:2180553 (MGI:1860964|PMID:10945464) RGD PMID:10945464 MGI:1860964 NCBI chr 1:83,349,127...83,357,497
Ensembl chr 1:83,348,592...83,357,494
JBrowse link
G Rpl13 ribosomal protein L13 acts_upstream_of ISO (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr19:51,153,990...51,156,541
Ensembl chr19:51,153,924...51,163,014
JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 acts_upstream_of ISO (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within ISO MGI:2387974|MGI:2388033 (MGI:1932782|PMID:11263494), (MGI:1933896|PMID:11313485) RGD PMID:11263494 PMID:11313485 MGI:1932782 MGI:1933896 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Specc1 sperm antigen with calponin homology and coiled-coil domains 1 acts_upstream_of_or_within ISO (MGI:6726619|PMID:34166821) RGD PMID:34166821 MGI:6726619 NCBI chr10:46,638,947...46,912,989
Ensembl chr10:46,638,809...46,912,802
JBrowse link
G Spic Spi-C transcription factor acts_upstream_of_or_within ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr 7:23,069,815...23,077,573
Ensembl chr 7:23,069,821...23,077,548
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1326851|PMID:9921650)
GO_REF:0000107
RGD
Ensembl
PMID:9921650 GO_REF:0000107 MGI:1326851 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:1326851 NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341
JBrowse link
G Thoc2 THO complex 2 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr  X:120,634,966...120,749,569
Ensembl chr  X:120,634,968...120,749,513
JBrowse link
G Thoc5 THO complex 5 acts_upstream_of_or_within ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr14:79,758,805...79,792,718
Ensembl chr14:79,758,917...79,792,718
JBrowse link
G Xab2 XPA binding protein 2 acts_upstream_of_or_within ISO MGI:3574459 (MGI:3574001|PMID:15725628) RGD PMID:15725628 MGI:3574001 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO MGI:3056522|MGI:3757577|MGI:4819826 (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
blastocyst formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Bysl bystin-like acts_upstream_of_or_within ISO (MGI:3700849|PMID:17242206) RGD PMID:17242206 MGI:3700849 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 acts_upstream_of_or_within ISO MGI:3050548 (MGI:3757893|PMID:17784788) RGD PMID:17784788 MGI:3757893 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475
JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q61139 (MGI:5702364|PMID:26416966)
Ensembl
RGD
PMID:26416966 GO_REF:0000107 MGI:5702364 NCBI chr 1:134,348,142...134,361,182
Ensembl chr 1:134,348,144...134,364,314
JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr11:23,888,586...23,917,612
Ensembl chr11:23,888,815...23,917,605
JBrowse link
G Kdm4c lysine demethylase 4C acts_upstream_of_or_within ISO (MGI:4421125|PMID:19696013) RGD PMID:19696013 MGI:4421125 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
JBrowse link
G Matr3 matrin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr18:27,154,098...27,193,212
Ensembl chr18:27,163,714...27,193,166
JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (MGI:3587532|PMID:16083859) RGD PMID:16083859 MGI:3587532 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 7:110,310,810...110,328,653
Ensembl chr 7:110,310,812...110,328,653
JBrowse link
G Mxi1 MAX interactor 1, dimerization protein acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:252,323,915...252,383,682
Ensembl chr 1:252,323,303...252,383,681
JBrowse link
G Nop2 NOP2 nucleolar protein acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459
JBrowse link
G Pbrm1 polybromo 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780
JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:47,843,224...47,861,675
Ensembl chr 1:47,843,224...47,861,674
JBrowse link
G Prickle2 prickle planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:4941925 (MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:5319591 NCBI chr 4:124,869,552...125,214,862
Ensembl chr 4:124,869,552...125,214,824
JBrowse link
G Ptpn18 protein tyrosine phosphatase, non-receptor type 18 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 9:36,672,325...36,689,963
Ensembl chr 9:36,672,362...36,690,995
JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 acts_upstream_of_or_within ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 9:14,198,101...14,206,119
Ensembl chr 9:14,198,092...14,206,110
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A acts_upstream_of_or_within ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817
JBrowse link
G Rtn4 reticulon 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 acts_upstream_of_or_within ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 acts_upstream_of_or_within ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 6:27,826,044...27,835,086
Ensembl chr 6:27,826,029...27,835,156
JBrowse link
G Skil SKI-like proto-oncogene acts_upstream_of_or_within ISO MGI:2387096 (MGI:1858539|PMID:10811619) RGD PMID:10811619 MGI:1858539 NCBI chr 2:112,247,047...112,275,176
Ensembl chr 2:112,247,051...112,275,080
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO MGI:3763362 (MGI:3811945|PMID:18804437) RGD PMID:18804437 MGI:3811945 NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323
JBrowse link
G Tjp1 tight junction protein 1 acts_upstream_of_or_within ISO (MGI:3797149|PMID:18423437) RGD PMID:18423437 MGI:3797149 NCBI chr 1:118,849,838...119,094,492
Ensembl chr 1:118,849,838...119,094,432
JBrowse link
G Tm4sf1 transmembrane 4 L six family member 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:141,456,950...141,466,146
Ensembl chr 2:141,453,310...141,466,146
JBrowse link
G Txnrd3 thioredoxin reductase 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:122,072,548...122,112,493
Ensembl chr 4:122,072,548...122,112,491
JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:5,823,460...5,850,470
Ensembl chr12:5,823,359...5,850,366
JBrowse link
G Wdr74 WD repeat domain 74 acts_upstream_of_or_within ISO (MGI:5287298|PMID:21799883), (MGI:5913376|PMID:27869233) RGD PMID:21799883 PMID:27869233 MGI:5287298 MGI:5913376 NCBI chr 1:205,631,769...205,636,563
Ensembl chr 1:205,631,824...205,636,563
JBrowse link
G Zp3 zona pellucida glycoprotein 3 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4943828|PMID:20382503)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20382503 GO_REF:0000024 GO_REF:0000107 MGI:4943828 NCBI chr12:20,690,547...20,697,513
Ensembl chr12:20,690,547...20,697,513
JBrowse link
blastocyst growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO MGI:101893 (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO MGI:3663683 (MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:3722560 NCBI chr12:14,861,312...14,886,048
Ensembl chr12:14,861,318...14,886,037
JBrowse link
G Nbn nibrin involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:2680772|PMID:14612522)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14612522 GO_REF:0000024 GO_REF:0000107 MGI:2680772 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO MGI:109345 (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Rad51b RAD51 paralog B acts_upstream_of_or_within ISO MGI:3621480 (MGI:1349263|PMID:10567591) RGD PMID:10567591 MGI:1349263 NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) acts_upstream_of_or_within ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 3:106,659,363...106,718,970
Ensembl chr 3:106,659,308...106,718,970
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:2386105 (MGI:1929360|PMID:11163203) RGD PMID:11163203 MGI:1929360 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Ubtfl1 upstream binding transcription factor like 1 acts_upstream_of_or_within ISO (MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:4414743
G Ubtfl6-ps1 UBTF like 6, pseudogene1 acts_upstream_of_or_within ISO (MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:4414743 NCBI chr 8:15,478,858...15,485,761 JBrowse link
G Zfp830 zinc finger protein 830 acts_upstream_of_or_within ISO MGI:3583779 (MGI:3582017|PMID:15988037) RGD PMID:15988037 MGI:3582017 NCBI chr10:67,701,340...67,702,804
Ensembl chr10:67,701,073...67,704,523
JBrowse link
blastocyst hatching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap3 A-kinase anchoring protein 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:159,688,049...159,714,067
Ensembl chr 4:159,699,289...159,713,903
JBrowse link
G Ankrd7 ankyrin repeat domain 7 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:47,312,270...47,336,754
Ensembl chr 4:47,318,420...47,336,753
JBrowse link
G Arhgdig Rho GDP dissociation inhibitor gamma acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:15,219,049...15,221,257
Ensembl chr10:15,219,049...15,221,213
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
JBrowse link
G Bcor BCL6 co-repressor acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:10,609,756...10,729,613
Ensembl chr  X:10,687,732...10,729,613
JBrowse link
G Ccdc24 coiled-coil domain containing 24 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:131,398,766...131,412,395
Ensembl chr 5:131,408,143...131,412,029
JBrowse link
G Ccdc62 coiled-coil domain containing 62 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:32,623,170...32,659,912
Ensembl chr12:32,623,170...32,660,017
JBrowse link
G Cmtm3 CKLF-like MARVEL transmembrane domain containing 3 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr19:622,563...630,721
Ensembl chr19:604,458...629,790
JBrowse link
G Coprs coordinator of PRMT5 and differentiation stimulator acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr16:75,721,264...75,726,375
Ensembl chr16:75,720,061...75,726,375
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Fbll1 fibrillarin-like 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299
JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO (MGI:3589098|PMID:15901638) RGD PMID:15901638 MGI:3589098 NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
JBrowse link
G Hcfc1 host cell factor C1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:151,687,779...151,712,688
Ensembl chr  X:151,687,779...151,712,638
JBrowse link
G Hs3st6 heparan sulfate-glucosamine 3-sulfotransferase 6 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:13,781,999...13,788,133
Ensembl chr10:13,781,993...13,788,133
JBrowse link
G LOC688459 hypothetical protein LOC688459 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5913376|PMID:27869233)
RGD PMID:27869233 PMID:21873635 MGI:5913376, RGD:13792537 NCBI chr 9:20,024,916...20,029,094
Ensembl chr 9:20,024,916...20,029,094
JBrowse link
G Lpar6 lysophosphatidic acid receptor 6 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr15:48,416,548...48,418,357
Ensembl chr15:48,416,544...48,422,331
JBrowse link
G Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr18:28,355,774...28,357,863
Ensembl chr18:28,355,774...28,358,076
JBrowse link
G Necab1 N-terminal EF-hand calcium binding protein 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:28,357,859...28,578,642
Ensembl chr 5:28,357,859...28,578,642
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:44,775,910...44,849,990
Ensembl chr10:44,775,911...44,850,013
JBrowse link
G Phf6 PHD finger protein 6 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:132,656,658...132,699,720
Ensembl chr  X:132,656,672...132,699,127
JBrowse link
G Plpp4 phospholipid phosphatase 4 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:183,829,794...183,959,319
Ensembl chr 1:183,830,409...183,959,319
JBrowse link
G Ppp4r4 protein phosphatase 4, regulatory subunit 4 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 6:122,663,172...122,753,988
Ensembl chr 6:122,663,344...122,753,384
JBrowse link
G Prss29 serine protease 29 acts_upstream_of_or_within ISO MGI:2149951 (MGI:3703092|PMID:17156484) RGD PMID:17156484 MGI:3703092 NCBI chr10:14,337,315...14,341,038
Ensembl chr10:14,339,036...14,341,038
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease acts_upstream_of_or_within ISO MGI:3577029 (MGI:3575978|PMID:15831459) RGD PMID:15831459 MGI:3575978 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
JBrowse link
G Slc25a34 solute carrier family 25, member 34 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 5:153,932,081...153,936,854 JBrowse link
G Slc35e2b solute carrier family 35, member E2B acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:166,185,166...166,211,055
Ensembl chr 5:166,185,166...166,207,021
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:2386105 (MGI:1929360|PMID:11163203) RGD PMID:11163203 MGI:1929360 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 acts_upstream_of_or_within ISO MGI:2387974|MGI:2388033 (MGI:1932782|PMID:11263494), (MGI:1933896|PMID:11313485) RGD PMID:11263494 PMID:11313485 MGI:1932782 MGI:1933896 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Smim14 small integral membrane protein 14 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr14:42,783,361...42,829,762
Ensembl chr14:42,783,332...42,829,760
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr17:76,740,755...76,883,766
Ensembl chr17:76,745,224...76,884,299
JBrowse link
G Stmn3 stathmin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 3:168,416,810...168,424,946
Ensembl chr 3:168,416,810...168,425,056
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:39,477,181...39,499,633
Ensembl chr12:39,477,568...39,499,628
JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:141,793,695...141,795,558 JBrowse link
G Tbl1xr1 TBL1X receptor 1 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:104,788,950...104,929,055
Ensembl chr 2:104,801,721...104,929,055
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:116,114,339...116,125,076
Ensembl chr  X:116,113,875...116,125,070
JBrowse link
G Zbed6 zinc finger, BED-type containing 6 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr13:45,107,489...45,113,141 JBrowse link
G Zfp14 ZFP14 zinc finger protein acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:85,268,649...85,286,125
Ensembl chr 1:85,268,643...85,285,759
JBrowse link
G Zfp420 zinc finger protein 420 acts_upstream_of_or_within ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:85,092,810...85,143,682
Ensembl chr 1:85,093,085...85,106,693
Ensembl chr 1:85,093,085...85,106,693
JBrowse link
inner cell mass cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:1346632|PMID:10518496) RGD PMID:10518496 MGI:1346632 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO MGI:3624778 (MGI:3623851|PMID:16611995) RGD PMID:16611995 MGI:3623851 NCBI chr10:67,834,059...67,844,771
Ensembl chr10:67,834,062...67,842,658
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in
acts_upstream_of_or_within
ISO (MGI:3844762|PMID:19372391)
(MGI:4822076|PMID:20639862), (MGI:4939073|PMID:21295276)
RGD PMID:19372391 PMID:20639862 PMID:21295276 MGI:3844762 MGI:4822076 MGI:4939073 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
inner cell mass cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 acts_upstream_of_or_within ISO MGI:1354386 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr 1:2,160,411...2,193,640
Ensembl chr 1:2,160,411...2,193,640
JBrowse link
G Lats2 large tumor suppressor kinase 2 acts_upstream_of_or_within ISO MGI:1333883 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr15:31,825,068...31,877,193
Ensembl chr15:31,825,092...31,877,220
JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within ISO (MGI:5528721|PMID:24183668) RGD PMID:24183668 MGI:5528721 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
JBrowse link
inner cell mass cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1930617 (MGI:707943|PMID:9171369)
Ensembl
RGD
PMID:9171369 GO_REF:0000107 MGI:707943 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Brd4 bromodomain containing 4 acts_upstream_of_or_within ISO MGI:2674141 (MGI:2179909|PMID:11997514) RGD PMID:11997514 MGI:2179909 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Chek1 checkpoint kinase 1 acts_upstream_of_or_within ISO MGI:1928818 (MGI:1860048|PMID:10859163) RGD PMID:10859163 MGI:1860048 NCBI chr 8:36,420,565...36,443,477 JBrowse link
G Cops2 COP9 signalosome subunit 2 acts_upstream_of_or_within ISO MGI:2678281 (MGI:2676528|PMID:12972599) RGD PMID:12972599 MGI:2676528 NCBI chr 3:113,084,174...113,110,090
Ensembl chr 3:113,084,176...113,109,947
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 acts_upstream_of_or_within ISO (MGI:3057099|PMID:15452149) RGD PMID:15452149 MGI:3057099 NCBI chr 1:185,617,469...185,696,476 JBrowse link
G Gins1 GINS complex subunit 1 acts_upstream_of_or_within ISO MGI:3706309 (MGI:3703396|PMID:16287864) RGD PMID:16287864 MGI:3703396 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936
JBrowse link
G Gins4 GINS complex subunit 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5575557 (MGI:5568335|PMID:24244394)
Ensembl
RGD
PMID:24244394 GO_REF:0000107 MGI:5568335 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
JBrowse link
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO MGI:3663683 (MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:3722560 NCBI chr12:14,861,312...14,886,048
Ensembl chr12:14,861,318...14,886,037
JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 acts_upstream_of_or_within ISO MGI:3039486 (MGI:3027420|PMID:14729962) RGD PMID:14729962 MGI:3027420 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159
JBrowse link
G Ndel1 nudE neurodevelopment protein 1-like 1 acts_upstream_of_or_within ISO MGI:3589467 (MGI:3588829|PMID:16107726) RGD PMID:16107726 MGI:3588829 NCBI chr10:53,505,628...53,582,025
Ensembl chr10:53,516,491...53,570,907
JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO MGI:3801303 (MGI:4459579|PMID:20484223) RGD PMID:20484223 MGI:4459579 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within ISO MGI:2450933 (MGI:2450001|PMID:12556505) RGD PMID:12556505 MGI:2450001 NCBI chr 2:46,797,853...46,799,621
Ensembl chr 2:46,797,853...46,799,746
JBrowse link
G Prpf19 pre-mRNA processing factor 19 acts_upstream_of_or_within ISO MGI:3711357 (MGI:3709933|PMID:17283042) RGD PMID:17283042 MGI:3709933 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Sall4 spalt-like transcription factor 4 acts_upstream_of_or_within ISO MGI:3699175 (MGI:3698636|PMID:16790473) RGD PMID:16790473 MGI:3698636 NCBI chr 3:157,474,067...157,491,055
Ensembl chr 3:157,474,642...157,490,822
JBrowse link
G Sbds SBDS, ribosome maturation factor acts_upstream_of_or_within ISO MGI:3664792 (MGI:3655752|PMID:16914746) RGD PMID:16914746 MGI:3655752 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 acts_upstream_of_or_within ISO MGI:3040431 (MGI:3038026|PMID:14993285) RGD PMID:14993285 MGI:3038026 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 acts_upstream_of_or_within ISO MGI:3033758 (MGI:1926844|PMID:11076765) RGD PMID:11076765 MGI:1926844 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO (MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:3575865 NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719
JBrowse link
inner cell mass cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 acts_upstream_of_or_within ISO MGI:1354386 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr 1:2,160,411...2,193,640
Ensembl chr 1:2,160,411...2,193,640
JBrowse link
G Lats2 large tumor suppressor kinase 2 acts_upstream_of_or_within ISO MGI:1333883 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr15:31,825,068...31,877,193
Ensembl chr15:31,825,092...31,877,220
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO MGI:3717121 (MGI:4946462|PMID:21146513) RGD PMID:21146513 MGI:4946462 NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
JBrowse link
positive regulation of trophectodermal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf2 colony stimulating factor 2 involved_in ISO (PMID:16792532), (PMID:24520418) RGD PMID:16792532 PMID:24520418 NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
(PMID:24508636)
GO_REF:0000107
RGD
Ensembl
PMID:24508636 GO_REF:0000107 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
regulation of blastocyst development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agbl4 AGBL carboxypeptidase 4 acts_upstream_of_or_within ISO MGI:5788002 (MGI:6149282|PMID:29593216) RGD PMID:29593216 MGI:6149282 NCBI chr 5:125,254,963...126,534,367 JBrowse link
G Klf4 Kruppel like factor 4 acts_upstream_of_or_within ISO MGI:6392146 (MGI:6149282|PMID:29593216) RGD PMID:29593216 MGI:6149282 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Ttll1 tubulin tyrosine ligase like 1 acts_upstream_of_or_within ISO (MGI:6149282|PMID:29593216) RGD PMID:29593216 MGI:6149282 NCBI chr 7:114,619,509...114,648,850
Ensembl chr 7:114,619,508...114,648,761
JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 acts_upstream_of_or_within ISO (MGI:6149282|PMID:29593216) RGD PMID:29593216 MGI:6149282 NCBI chr 9:76,221,659...76,258,219
Ensembl chr 9:76,221,796...76,251,301
JBrowse link
trophectodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO MGI:1857117 (MGI:1095761|PMID:9272950) RGD PMID:9272950 MGI:1095761 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Bysl bystin-like involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3700849|PMID:17242206)
Ensembl
RGD
PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO MGI:3696711 (MGI:3695521|PMID:17138661) RGD PMID:17138661 MGI:3695521 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO MGI:1857928 (MGI:3612803|PMID:16325584), (MGI:4819480|PMID:20404091), (MGI:5644240|PMID:25397698) RGD PMID:16325584 PMID:20404091 PMID:25397698 MGI:3612803 MGI:4819480 MGI:5644240 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2176158 (MGI:3628724|PMID:16579983) RGD PMID:16579983 MGI:3628724 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 involved_in ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr 7:52,130,444...52,222,338
Ensembl chr 7:52,130,441...52,223,575
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 involved_in ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr 1:65,555,924...65,572,167
Ensembl chr 1:65,555,924...65,572,167
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component acts_upstream_of_or_within ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:101893 (MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:3612803 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Foxd3 forkhead box D3 acts_upstream_of_or_within ISO MGI:2388719 (MGI:3604420|PMID:16039639) RGD PMID:16039639 MGI:3604420 NCBI chr 5:114,334,693...114,337,788 JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 involved_in ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213
JBrowse link
G Hopx HOP homeobox acts_upstream_of_or_within ISO MGI:2389233 (MGI:3722454|PMID:17576768)
(PMID:17576768)
RGD PMID:17576768 MGI:3722454 NCBI chr14:31,055,912...31,082,909
Ensembl chr14:31,075,148...31,082,909
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2153821 (MGI:1332277|PMID:10022836), (MGI:2138058|PMID:11456449)
Ensembl
RGD
PMID:10022836 PMID:11456449 GO_REF:0000107 MGI:1332277 MGI:2138058 NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:2138058 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO MGI:1201683 (MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:3612803 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Rbm46 RNA binding motif protein 46 acts_upstream_of_or_within ISO (MGI:5644240|PMID:25397698) RGD PMID:25397698 MGI:5644240 NCBI chr 2:168,198,324...168,242,011
Ensembl chr 2:168,198,463...168,242,011
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:17576768) RGD PMID:17576768 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO MGI:3040993 (MGI:4819480|PMID:20404091) RGD PMID:20404091 MGI:4819480 NCBI chr 3:161,315,114...161,322,998
Ensembl chr 3:161,315,031...161,322,995
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO MGI:3056522|MGI:4819826 (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle2 prickle planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:4941925 (MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:5319591 NCBI chr 4:124,869,552...125,214,862
Ensembl chr 4:124,869,552...125,214,824
JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO MGI:106907 (MGI:3770613|PMID:18083014) RGD PMID:18083014 MGI:3770613 NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323
JBrowse link
trophectodermal cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15150278)
GO_REF:0000107
RGD
Ensembl
PMID:15150278 GO_REF:0000107 NCBI chr 3:42,815,490...42,892,423
Ensembl chr 3:42,822,610...42,892,327
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO (MGI:4829413|PMID:20708584) RGD PMID:20708584 MGI:4829413 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Esrrb estrogen-related receptor beta acts_upstream_of_or_within ISO MGI:1857422 (MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:1095811 NCBI chr 6:106,007,662...106,163,136
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO (MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:3575865 NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719
JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2651546 (MGI:1345775|PMID:10500095)
Ensembl
RGD
PMID:10500095 GO_REF:0000107 MGI:1345775 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462
JBrowse link
G Esrrb estrogen-related receptor beta acts_upstream_of_or_within ISO MGI:1857422 (MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:1095811 NCBI chr 6:106,007,662...106,163,136
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:1856970|MGI:2158730 (MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:2138058 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        blastocyst development 157
          blastocyst formation + 59
          blastocyst growth + 32
          blastocyst hatching 38
          regulation of blastocyst development 4
Path 2
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        multicellular organism development 5727
          embryo development 1347
            embryo development ending in birth or egg hatching 867
              chordate embryonic development 851
                in utero embryonic development 552
                  blastocyst development 157
                    blastocyst formation + 59
                    blastocyst growth + 32
                    blastocyst hatching 38
                    regulation of blastocyst development 4
paths to the root