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ONTOLOGY REPORT - ANNOTATIONS


Term:blastocyst development
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Accession:GO:0001824 term browser browse the term
Definition:The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm.
Comment:See also the Anatomical Dictionary for Mouse Development ontology terms 'TS5, embryo ; EMAP:23', 'TS5, inner cell mass ; EMAP:24' and 'TS5, trophectoderm; EMAP:28'.
Synonyms:only_in_taxon: NCBITaxon:32525 ! Theria


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blastocyst development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b1 ATPase Na+/K+ transporting subunit beta 1 ISO RGD MGI:1888635 NCBI chr13:82,737,161...82,757,681
Ensembl chr13:82,737,159...82,758,004
JBrowse link
G Bnip2 BCL2 interacting protein 2 ISO (MGI:3848119|PMID:19117032) RGD PMID:19117032 MGI:3848119 NCBI chr 8:76,400,333...76,426,307
Ensembl chr 8:76,400,341...76,426,503
JBrowse link
G Capn2 calpain 2 ISO MGI:3628453 (MGI:3620446|PMID:16433929) RGD PMID:16433929 MGI:3620446 NCBI chr13:100,878,649...100,928,811
Ensembl chr13:100,878,650...100,928,811
JBrowse link
G Cdk11b cyclin-dependent kinase 11B IEA
ISO
GO_REF:0000107
MGI:3043373 (MGI:3041915|PMID:15060143)
Ensembl
RGD
PMID:15060143 GO_REF:0000107 MGI:3041915 NCBI chr 5:173,051,900...173,078,049
Ensembl chr 5:173,052,063...173,078,046
JBrowse link
G Cdx2 caudal type homeo box 2 ISO MGI:1857928 (MGI:3578587|PMID:15788452) RGD PMID:15788452 MGI:3578587 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Dad1 defender against cell death 1 ISO MGI:2445490 (MGI:1858316|PMID:10748466) RGD PMID:10748466 MGI:1858316 NCBI chr15:32,868,136...32,887,933
Ensembl chr15:32,868,087...32,888,095
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 ISO MGI:3497714 (MGI:3057099|PMID:15452149) RGD PMID:15452149 MGI:3057099 NCBI chr 1:201,620,642...201,689,905
NCBI chr 1:203,149,414...203,228,705
JBrowse link
G Elf3 E74 like ETS transcription factor 3 ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr13:52,083,873...52,088,798
Ensembl chr13:52,083,859...52,088,780
JBrowse link
G Emg1 EMG1 N1-specific pseudouridine methyltransferase ISO MGI:4839753 (MGI:4839400|PMID:20858271) RGD PMID:20858271 MGI:4839400 NCBI chr 4:157,222,366...157,230,647
Ensembl chr 4:157,222,385...157,230,647
JBrowse link
G Eomes eomesodermin ISO MGI:3579497 (MGI:3578587|PMID:15788452) RGD PMID:15788452 MGI:3578587 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Etv2 ETS variant transcription factor 2 ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr 1:89,091,239...89,094,570
Ensembl chr 1:89,091,239...89,094,530
JBrowse link
G G2e3 G2/M-phase specific E3 ubiquitin protein ligase ISO MGI:3808723 (MGI:3807157|PMID:18511420) RGD PMID:18511420 MGI:3807157 NCBI chr 6:72,092,148...72,123,878
Ensembl chr 6:72,092,194...72,122,497
JBrowse link
G Gdf9 growth differentiation factor 9 ISO (PMID:24313324) RGD PMID:24313324 NCBI chr10:38,782,519...38,793,238
Ensembl chr10:38,788,992...38,792,940
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hnf1a HNF1 homeobox A ISO (MGI:3653309|PMID:16880268) RGD PMID:16880268 MGI:3653309 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Hormad1 HORMA domain containing 1 ISS
ISO
GO_REF:0000024
(MGI:4868505|PMID:21079677)
UniProt
RGD
PMID:21079677 GO_REF:0000024 MGI:4868505 NCBI chr 2:197,681,820...197,720,197
Ensembl chr 2:197,682,000...197,719,254
JBrowse link
G Kpna7 karyopherin subunit alpha 7 ISO MGI:6108355 (MGI:5913752|PMID:20699224) RGD PMID:20699224 MGI:5913752 NCBI chr12:11,347,631...11,378,810
Ensembl chr12:11,347,643...11,384,349
JBrowse link
G Med21 mediator complex subunit 21 ISO MGI:2445456 (MGI:1345774|PMID:10500093) RGD PMID:10500093 MGI:1345774 NCBI chr 4:180,961,194...180,968,155
Ensembl chr 4:180,961,142...180,968,123
JBrowse link
G N4bp2l2 NEDD4 binding protein 2-like 2 ISO (MGI:3797340|PMID:18360097) RGD PMID:18360097 MGI:3797340 NCBI chr12:627,128...650,604
Ensembl chr12:628,488...650,376
JBrowse link
G Nasp nuclear autoantigenic sperm protein ISS
ISO
GO_REF:0000024
(MGI:3694318|PMID:16728391)
UniProt
RGD
PMID:16728391 GO_REF:0000024 MGI:3694318 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Nek2 NIMA-related kinase 2 ISO (MGI:3848119|PMID:19117032) RGD PMID:19117032 MGI:3848119 NCBI chr13:110,511,546...110,524,750
Ensembl chr13:110,511,668...110,522,769
JBrowse link
G Npm2 nucleophosmin/nucleoplasmin 2 ISO (PMID:12714744) RGD PMID:12714744 NCBI chr15:52,337,457...52,345,849
Ensembl chr15:52,337,528...52,344,629
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:21258368) RGD PMID:21258368 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 IEA
ISO
GO_REF:0000107
MGI:2180548 (MGI:1860964|PMID:10945464)
Ensembl
RGD
PMID:10945464 GO_REF:0000107 MGI:1860964 NCBI chr 3:79,876,938...79,882,319
Ensembl chr 3:79,876,938...79,882,319
JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 ISO MGI:2180553 (MGI:1860964|PMID:10945464) RGD PMID:10945464 MGI:1860964 NCBI chr 1:84,978,220...84,986,536
Ensembl chr 1:84,978,206...84,986,581
JBrowse link
G Rpl13 ribosomal protein L13 ISO (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr19:55,917,489...55,920,040
Ensembl chr19:55,917,736...55,919,996
JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 ISO (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 6:43,884,627...43,890,818
Ensembl chr 6:43,884,678...43,889,515
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO MGI:2387974|MGI:2388033 (MGI:1932782|PMID:11263494), (MGI:1933896|PMID:11313485) RGD PMID:11263494 PMID:11313485 MGI:1932782 MGI:1933896 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Spic Spi-C transcription factor ISO (MGI:3624255|PMID:16630543) RGD PMID:16630543 MGI:3624255 NCBI chr 7:29,225,721...29,233,452
Ensembl chr 7:29,225,727...29,233,392
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO (MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:1326851 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 ISO (MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:1326851 NCBI chr14:3,506,416...3,680,508
Ensembl chr14:3,506,339...3,682,545
JBrowse link
G Thoc2 THO complex 2 ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr  X:128,153,824...128,268,327
Ensembl chr  X:128,161,895...128,268,322
JBrowse link
G Thoc5 THO complex 5 ISO (MGI:5529717|PMID:24315442) RGD PMID:24315442 MGI:5529717 NCBI chr14:85,138,219...85,171,729
Ensembl chr14:85,142,279...85,171,726
JBrowse link
G Xab2 XPA binding protein 2 ISO MGI:3574459 (MGI:3574001|PMID:15725628) RGD PMID:15725628 MGI:3574001 NCBI chr12:2,158,391...2,170,397
Ensembl chr12:2,158,389...2,170,504
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO MGI:3056522|MGI:3757577|MGI:4819826 (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
blastocyst formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Bysl bystin-like ISO (MGI:3700849|PMID:17242206) RGD PMID:17242206 MGI:3700849 NCBI chr 9:15,393,461...15,403,212
Ensembl chr 9:15,393,330...15,403,117
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 ISO MGI:3050548 (MGI:3757893|PMID:17784788) RGD PMID:17784788 MGI:3757893 NCBI chr15:27,720,220...27,736,528
Ensembl chr15:27,720,223...27,733,785
JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) IEA
ISO
GO_REF:0000107
UniProtKB:Q61139 (MGI:5702364|PMID:26416966)
Ensembl
RGD
PMID:26416966 GO_REF:0000107 MGI:5702364 NCBI chr 1:142,185,092...142,198,167
Ensembl chr 1:142,185,094...142,197,182
JBrowse link
G Gabpa GA binding protein transcription factor subunit alpha ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr11:24,293,845...24,322,822
Ensembl chr11:24,263,281...24,322,815
JBrowse link
G Kdm4c lysine demethylase 4C ISO (MGI:4421125|PMID:19696013) RGD PMID:19696013 MGI:4421125 NCBI chr 5:90,800,139...91,012,662
Ensembl chr 5:90,800,082...91,012,659
JBrowse link
G Matr3 matrin 3 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr18:28,351,691...28,390,764
Ensembl chr18:28,361,283...28,390,717
JBrowse link
G Mfn2 mitofusin 2 ISO (MGI:3587532|PMID:16083859) RGD PMID:16083859 MGI:3587532 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145
JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 7:119,978,981...119,996,824
Ensembl chr 7:119,978,983...119,996,824
JBrowse link
G Mxi1 MAX interactor 1, dimerization protein ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:274,030,748...274,090,071
Ensembl chr 1:274,030,978...274,090,071
JBrowse link
G Nop2 NOP2 nucleolar protein ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:157,646,759...157,658,502
Ensembl chr 4:157,647,082...157,658,390
JBrowse link
G Pbrm1 polybromo 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr16:7,103,714...7,202,899
Ensembl chr16:7,103,998...7,200,362
JBrowse link
G Pnldc1 PARN like, ribonuclease domain containing 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:48,038,830...48,058,400
Ensembl chr 1:48,039,909...48,058,400
JBrowse link
G Prickle2 prickle planar cell polarity protein 2 ISO MGI:4941925 (MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:5319591 NCBI chr 4:124,238,167...124,584,176
Ensembl chr 4:124,238,167...124,338,176
JBrowse link
G Ptpn18 protein tyrosine phosphatase, non-receptor type 18 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 9:40,972,089...40,988,790
Ensembl chr 9:40,972,089...40,988,790
JBrowse link
G Rpl7l1 ribosomal protein L7-like 1 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 9:16,508,477...16,516,502
Ensembl chr 9:16,508,799...16,513,120
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 7:123,980,251...123,990,139
Ensembl chr 7:123,980,251...123,990,139
JBrowse link
G Rtn4 reticulon 4 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 9:61,594,620...61,634,510
Ensembl chr 9:61,594,620...61,634,510
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 ISO (MGI:5605165|PMID:23211737), (MGI:5913376|PMID:27869233) RGD PMID:23211737 PMID:27869233 MGI:5605165 MGI:5913376 NCBI chr 6:29,991,232...29,999,668
Ensembl chr 6:29,991,307...29,999,410
JBrowse link
G Skil SKI-like proto-oncogene ISO MGI:2387096 (MGI:1858539|PMID:10811619) RGD PMID:10811619 MGI:1858539 NCBI chr 2:115,862,932...115,891,304
Ensembl chr 2:115,866,701...115,891,097
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
JBrowse link
G Tead4 TEA domain transcription factor 4 ISO MGI:3763362 (MGI:3811945|PMID:18804437) RGD PMID:18804437 MGI:3811945 NCBI chr 4:161,542,566...161,619,848
Ensembl chr 4:161,540,130...161,587,222
JBrowse link
G Tjp1 tight junction protein 1 ISO (MGI:3797149|PMID:18423437) RGD PMID:18423437 MGI:3797149 NCBI chr 1:126,146,489...126,515,359
Ensembl chr 1:126,146,489...126,227,469
JBrowse link
G Tm4sf1 transmembrane 4 L six family member 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:147,382,866...147,392,062
Ensembl chr 2:147,382,866...147,392,062
JBrowse link
G Txnrd3 thioredoxin reductase 3 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:121,612,332...121,650,543
Ensembl chr 4:121,612,332...121,650,571
JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:6,930,018...6,957,027
Ensembl chr12:6,929,978...6,956,984
JBrowse link
G Wdr74 WD repeat domain 74 ISO (MGI:5287298|PMID:21799883), (MGI:5913376|PMID:27869233) RGD PMID:21799883 PMID:27869233 MGI:5287298 MGI:5913376 NCBI chr 1:224,933,906...224,938,659
Ensembl chr 1:224,933,529...224,938,662
JBrowse link
G Zp3 zona pellucida glycoprotein 3 IEA
ISO
ISS
GO_REF:0000107
(MGI:4943828|PMID:20382503)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20382503 GO_REF:0000024 GO_REF:0000107 MGI:4943828 NCBI chr12:23,735,225...23,752,734
Ensembl chr12:23,735,223...23,742,190
JBrowse link
blastocyst growth term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO MGI:101893 (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Ints1 integrator complex subunit 1 ISO MGI:3663683 (MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:3722560 NCBI chr12:16,950,704...16,974,896 JBrowse link
G Nbn nibrin IEA
ISO
ISS
GO_REF:0000107
(MGI:2680772|PMID:14612522)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14612522 GO_REF:0000024 GO_REF:0000107 MGI:2680772 NCBI chr 5:29,622,347...29,656,877
Ensembl chr 5:29,622,281...29,656,864
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO MGI:109345 (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Rad51b RAD51 paralog B ISO MGI:3621480 (MGI:1349263|PMID:10567591) RGD PMID:10567591 MGI:1349263 NCBI chr 6:102,473,978...103,018,185
Ensembl chr 6:102,477,036...102,512,505
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:2386105 (MGI:1929360|PMID:11163203) RGD PMID:11163203 MGI:1929360 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Ubtfl1 upstream binding transcription factor like 1 ISO (MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:4414743
G Ubtfl6-ps1 UBTF like 6 (pseudogene) ISO (MGI:4414743|PMID:19915186) RGD PMID:19915186 MGI:4414743 NCBI chr 8:17,525,070...17,530,404 JBrowse link
G Zfp830 zinc finger protein 830 ISO MGI:3583779 (MGI:3582017|PMID:15988037) RGD PMID:15988037 MGI:3582017 NCBI chr10:70,118,250...70,119,714
Ensembl chr10:70,118,250...70,119,716
JBrowse link
blastocyst hatching term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap3 A-kinase anchoring protein 3 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:159,399,686...159,425,512
Ensembl chr 4:159,403,501...159,425,629
JBrowse link
G Ankrd7 ankyrin repeat domain 7 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 4:45,564,542...45,618,932
Ensembl chr 4:45,567,573...45,586,228
JBrowse link
G Arhgdig Rho GDP dissociation inhibitor gamma ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376
G Asf1b anti-silencing function 1B histone chaperone ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Bcor BCL6 co-repressor ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
G Ccdc24 coiled-coil domain containing 24 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:136,691,655...136,707,197
Ensembl chr 5:136,703,674...136,706,998
JBrowse link
G Ccdc62 coiled-coil domain containing 62 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:38,057,532...38,093,916
Ensembl chr12:38,057,556...38,093,050
JBrowse link
G Cmtm3 CKLF-like MARVEL transmembrane domain containing 3 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr19:830,874...838,528
Ensembl chr19:830,877...838,099
JBrowse link
G Coprs coordinator of PRMT5 and differentiation stimulator ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr16:80,826,681...80,831,791
Ensembl chr16:80,826,681...80,831,791
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Fbll1 fibrillarin-like 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:20,620,957...20,622,600
Ensembl chr10:20,620,957...20,622,600
JBrowse link
G Grn granulin precursor ISO (MGI:3589098|PMID:15901638) RGD PMID:15901638 MGI:3589098 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Hcfc1 host cell factor C1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:156,812,012...156,837,227
Ensembl chr  X:156,812,064...156,837,227
JBrowse link
G Hs3st6 heparan sulfate-glucosamine 3-sulfotransferase 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:14,122,856...14,128,984
Ensembl chr10:14,122,878...14,128,983
JBrowse link
G LOC688459 hypothetical protein LOC688459 ISO
IBA
(MGI:5913376|PMID:27869233)
PMID:21873635
RGD PMID:27869233, PMID:21873635 MGI:5913376, RGD:13792537 NCBI chr 9:23,420,654...23,424,832
Ensembl chr 9:23,420,654...23,424,832
JBrowse link
G Lpar6 lysophosphatidic acid receptor 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr15:55,126,953...55,128,762
Ensembl chr15:55,126,953...55,128,761
JBrowse link
G Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr18:29,585,671...29,587,760
Ensembl chr18:29,585,671...29,587,760
JBrowse link
G Necab1 N-terminal EF-hand calcium binding protein 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:28,507,596...28,737,556
Ensembl chr 5:28,504,558...28,737,719
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr10:46,339,821...46,404,640
Ensembl chr10:46,339,821...46,404,642
JBrowse link
G Phf6 PHD finger protein 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:158,698,353...158,739,855
Ensembl chr  X:158,698,356...158,739,838
Ensembl chr  X:158,698,356...158,739,838
JBrowse link
G Plpp4 phospholipid phosphatase 4 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:202,432,366...202,560,628
Ensembl chr 1:202,432,366...202,560,628
JBrowse link
G Ppp4r4 protein phosphatase 4, regulatory subunit 4 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 6:127,400,585...127,497,280
Ensembl chr 6:127,400,585...127,497,280
JBrowse link
G Prss29 serine protease 29 ISO MGI:2149951 (MGI:3703092|PMID:17156484) RGD PMID:17156484 MGI:3703092 NCBI chr10:14,678,286...14,681,877
Ensembl chr10:14,678,278...14,681,888
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO MGI:3577029 (MGI:3575978|PMID:15831459) RGD PMID:15831459 MGI:3575978 NCBI chr18:3,134,630...3,227,702
Ensembl chr18:3,162,543...3,227,688
JBrowse link
G Slc25a34 solute carrier family 25, member 34 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 5:160,175,206...160,179,978
Ensembl chr 5:160,176,124...160,179,978
JBrowse link
G Slc35e2b solute carrier family 35, member E2B ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 5:173,024,335...173,050,228
Ensembl chr 5:173,024,335...173,046,194
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:2386105 (MGI:1929360|PMID:11163203) RGD PMID:11163203 MGI:1929360 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO MGI:2387974|MGI:2388033 (MGI:1932782|PMID:11263494), (MGI:1933896|PMID:11313485) RGD PMID:11263494 PMID:11313485 MGI:1932782 MGI:1933896 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Smim14 small integral membrane protein 14 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr14:44,413,636...44,460,044
Ensembl chr14:44,413,636...44,457,239
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr17:80,960,785...81,002,830
Ensembl chr17:80,960,785...81,002,838
JBrowse link
G Stmn3 stathmin 3 IEA
ISO
GO_REF:0000107
(MGI:5913376|PMID:27869233)
Ensembl
RGD
PMID:27869233 GO_REF:0000107 MGI:5913376 NCBI chr 3:176,808,016...176,816,108
Ensembl chr 3:176,808,017...176,816,162
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr12:45,199,012...45,221,507
Ensembl chr12:45,199,577...45,221,512
JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:146,532,002...146,533,538 JBrowse link
G Tbl1xr1 TBL1X receptor 1 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 2:107,221,913...107,359,229
Ensembl chr 2:107,233,054...107,359,229
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr  X:123,486,988...123,497,726
Ensembl chr  X:123,486,989...123,497,726
JBrowse link
G Zbed6 zinc finger, BED-type containing 6 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr13:50,196,143...50,211,670 JBrowse link
G Zfp14 ZFP14 zinc finger protein ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:88,350,361...88,367,370
Ensembl chr 1:88,350,361...88,361,851
JBrowse link
G Zfp420 zinc finger protein 420 ISO (MGI:5913376|PMID:27869233) RGD PMID:27869233 MGI:5913376 NCBI chr 1:88,531,975...88,564,480
Ensembl chr 1:88,542,035...88,544,156
JBrowse link
inner cell mass cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:1857856 (MGI:1346632|PMID:10518496) RGD PMID:10518496 MGI:1346632 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Nle1 notchless homolog 1 ISO MGI:3624778 (MGI:3623851|PMID:16611995) RGD PMID:16611995 MGI:3623851 NCBI chr10:70,250,959...70,261,880
Ensembl chr10:70,250,959...70,259,553
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO (MGI:3844762|PMID:19372391), (MGI:4822076|PMID:20639862), (MGI:4939073|PMID:21295276) RGD PMID:19372391 PMID:20639862 PMID:21295276 MGI:3844762 MGI:4822076 MGI:4939073 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
inner cell mass cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 ISO MGI:1354386 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr 1:1,784,078...1,817,310
Ensembl chr 1:1,784,078...1,817,310
JBrowse link
G Lats2 large tumor suppressor kinase 2 ISO MGI:1333883 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr15:37,943,609...37,995,175
Ensembl chr15:37,943,609...37,983,882
JBrowse link
G Prdm14 PR/SET domain 14 ISO (MGI:5528721|PMID:24183668) RGD PMID:24183668 MGI:5528721 NCBI chr 5:5,710,076...5,730,560
Ensembl chr 5:5,710,392...5,730,560
JBrowse link
inner cell mass cell proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated IEA
ISO
GO_REF:0000107
MGI:1930617 (MGI:707943|PMID:9171369)
Ensembl
RGD
PMID:9171369 GO_REF:0000107 MGI:707943 NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
JBrowse link
G Brd4 bromodomain containing 4 ISO MGI:2674141 (MGI:2179909|PMID:11997514) RGD PMID:11997514 MGI:2179909 NCBI chr 7:14,222,101...14,303,055
Ensembl chr 7:14,222,101...14,303,055
JBrowse link
G Chek1 checkpoint kinase 1 ISO MGI:1928818 (MGI:1860048|PMID:10859163) RGD PMID:10859163 MGI:1860048 NCBI chr 8:39,181,162...39,201,588
Ensembl chr 8:39,181,163...39,243,882
JBrowse link
G Cops2 COP9 signalosome subunit 2 ISO MGI:2678281 (MGI:2676528|PMID:12972599) RGD PMID:12972599 MGI:2676528 NCBI chr 3:118,109,394...118,137,125
Ensembl chr 3:118,109,406...118,137,191
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 ISO (MGI:3057099|PMID:15452149) RGD PMID:15452149 MGI:3057099 NCBI chr 1:201,620,642...201,689,905
NCBI chr 1:203,149,414...203,228,705
JBrowse link
G Gins1 GINS complex subunit 1 ISO MGI:3706309 (MGI:3703396|PMID:16287864) RGD PMID:16287864 MGI:3703396 NCBI chr 3:146,695,366...146,716,787
Ensembl chr 3:146,695,344...146,716,816
JBrowse link
G Gins4 GINS complex subunit 4 IEA
ISO
GO_REF:0000107
MGI:5575557 (MGI:5568335|PMID:24244394)
Ensembl
RGD
PMID:24244394 GO_REF:0000107 MGI:5568335 NCBI chr16:73,584,412...73,596,808
Ensembl chr16:73,584,521...73,596,793
JBrowse link
G Ints1 integrator complex subunit 1 ISO MGI:3663683 (MGI:3722560|PMID:17544522) RGD PMID:17544522 MGI:3722560 NCBI chr12:16,950,704...16,974,896 JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 ISO MGI:3039486 (MGI:3027420|PMID:14729962) RGD PMID:14729962 MGI:3027420 NCBI chr 6:144,291,313...144,362,454
Ensembl chr 6:144,291,974...144,363,947
JBrowse link
G Ndel1 nudE neurodevelopment protein 1-like 1 ISO MGI:3589467 (MGI:3588829|PMID:16107726) RGD PMID:16107726 MGI:3588829 NCBI chr10:55,398,919...55,456,654
Ensembl chr10:55,411,901...55,444,861
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO MGI:3801303 (MGI:4459579|PMID:20484223) RGD PMID:20484223 MGI:4459579 NCBI chr 1:192,064,586...192,088,547
Ensembl chr 1:192,064,589...192,088,520
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor ISO MGI:2450933 (MGI:2450001|PMID:12556505) RGD PMID:12556505 MGI:2450001 NCBI chr 2:47,266,758...47,268,526
Ensembl chr 2:47,266,738...47,268,625
JBrowse link
G Prpf19 pre-mRNA processing factor 19 ISO MGI:3711357 (MGI:3709933|PMID:17283042) RGD PMID:17283042 MGI:3709933 NCBI chr 1:226,947,065...226,958,147
Ensembl chr 1:226,947,105...226,958,144
JBrowse link
G Sall4 spalt-like transcription factor 4 ISO MGI:3699175 (MGI:3698636|PMID:16790473) RGD PMID:16790473 MGI:3698636 NCBI chr 3:165,520,155...165,538,176
Ensembl chr 3:165,520,392...165,537,940
JBrowse link
G Sbds SBDS, ribosome maturation factor ISO MGI:3664792 (MGI:3655752|PMID:16914746) RGD PMID:16914746 MGI:3655752 NCBI chr12:29,921,443...29,930,602
Ensembl chr12:29,921,443...29,930,600
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO MGI:3040431 (MGI:3038026|PMID:14993285) RGD PMID:14993285 MGI:3038026 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 ISO MGI:3033758 (MGI:1926844|PMID:11076765) RGD PMID:11076765 MGI:1926844 NCBI chr 9:15,513,048...15,532,992
Ensembl chr 9:15,513,063...15,529,800
JBrowse link
G Zpr1 ZPR1 zinc finger ISO (MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:3575865 NCBI chr 8:50,563,047...50,572,621
Ensembl chr 8:50,563,047...50,572,621
JBrowse link
inner cell mass cellular morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lats1 large tumor suppressor kinase 1 ISO MGI:1354386 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr 1:1,784,078...1,817,310
Ensembl chr 1:1,784,078...1,817,310
JBrowse link
G Lats2 large tumor suppressor kinase 2 ISO MGI:1333883 (MGI:5502808|PMID:23824537) RGD PMID:23824537 MGI:5502808 NCBI chr15:37,943,609...37,995,175
Ensembl chr15:37,943,609...37,983,882
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:3717121 (MGI:4946462|PMID:21146513) RGD PMID:21146513 MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
positive regulation of trophectodermal cell proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csf2 colony stimulating factor 2 ISO (PMID:16792532), (PMID:24520418) RGD PMID:16792532 PMID:24520418 NCBI chr10:39,602,089...39,604,070
Ensembl chr10:39,602,089...39,604,070
JBrowse link
G Igf1 insulin-like growth factor 1 ISO
IEA
(PMID:24508636)
GO_REF:0000107
RGD
Ensembl
PMID:24508636 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
regulation of blastocyst development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agbl4 ATP/GTP binding protein-like 4 ISO MGI:5788002 (MGI:6149282|PMID:29593216) RGD PMID:29593216 MGI:6149282 NCBI chr 5:130,742,297...131,656,581
NCBI chr 5:130,286,393...130,305,884
Ensembl chr 5:131,380,297...131,455,211
Ensembl chr 5:131,380,297...131,455,211
JBrowse link
G Klf4 Kruppel like factor 4 ISO MGI:6392146 (MGI:6149282|PMID:29593216) RGD PMID:29593216 MGI:6149282 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G Ttll1 tubulin tyrosine ligase like 1 ISO (MGI:6149282|PMID:29593216) RGD PMID:29593216 MGI:6149282 NCBI chr 7:124,338,396...124,367,719
Ensembl chr 7:124,338,395...124,367,630
JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 ISO (MGI:6149282|PMID:29593216) RGD PMID:29593216 MGI:6149282 NCBI chr 9:81,925,363...81,961,882
Ensembl chr 9:81,940,630...81,954,686
JBrowse link
trophectodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO MGI:1857117 (MGI:1095761|PMID:9272950) RGD PMID:9272950 MGI:1095761 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Bysl bystin-like IEA
ISO
GO_REF:0000107
(MGI:3700849|PMID:17242206)
Ensembl
RGD
PMID:17242206 GO_REF:0000107 MGI:3700849 NCBI chr 9:15,393,461...15,403,212
Ensembl chr 9:15,393,330...15,403,117
JBrowse link
G Cdh1 cadherin 1 ISO MGI:3696711 (MGI:3695521|PMID:17138661) RGD PMID:17138661 MGI:3695521 NCBI chr19:38,768,467...38,838,395
Ensembl chr19:38,768,467...38,838,395
JBrowse link
G Cdx2 caudal type homeo box 2 ISO MGI:1857928 (MGI:3612803|PMID:16325584), (MGI:4819480|PMID:20404091), (MGI:5644240|PMID:25397698) RGD PMID:16325584 PMID:20404091 PMID:25397698 MGI:3612803 MGI:4819480 MGI:5644240 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:2176158 (MGI:3628724|PMID:16579983) RGD PMID:16579983 MGI:3628724 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr 7:59,526,105...59,617,307
Ensembl chr 7:59,527,124...59,587,385
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 ISO (MGI:5487505|PMID:22367759) RGD PMID:22367759 MGI:5487505 NCBI chr 1:64,130,823...64,147,066
Ensembl chr 1:64,130,908...64,147,251
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:5528755|PMID:24036311) RGD PMID:24036311 MGI:5528755 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Eomes eomesodermin ISO MGI:101893 (MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:3612803 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Foxd3 forkhead box D3 ISO MGI:2388719 (MGI:3604420|PMID:16039639) RGD PMID:16039639 MGI:3604420 NCBI chr 5:118,346,283...118,349,120 JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hopx HOP homeobox ISO (PMID:17576768)
MGI:2389233 (MGI:3722454|PMID:17576768)
RGD PMID:17576768 MGI:3722454 NCBI chr14:33,354,803...33,362,547
Ensembl chr14:33,354,807...33,362,551
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit IEA
ISO
GO_REF:0000107
MGI:2153821 (MGI:1332277|PMID:10022836), (MGI:2138058|PMID:11456449)
Ensembl
RGD
PMID:10022836 PMID:11456449 GO_REF:0000107 MGI:1332277 MGI:2138058 NCBI chr19:26,092,972...26,094,756
Ensembl chr19:26,092,974...26,094,756
JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:2138058 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO MGI:1201683 (MGI:3612803|PMID:16325584) RGD PMID:16325584 MGI:3612803 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Rbm46 RNA binding motif protein 46 ISO (MGI:5644240|PMID:25397698) RGD PMID:25397698 MGI:5644240 NCBI chr 2:181,828,931...181,874,223
Ensembl chr 2:181,831,244...181,874,223
JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G Srf serum response factor ISO (PMID:17576768) RGD PMID:17576768 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tfap2c transcription factor AP-2 gamma ISO MGI:3040993 (MGI:4819480|PMID:20404091) RGD PMID:20404091 MGI:4819480 NCBI chr 3:170,550,314...170,558,197
Ensembl chr 3:170,550,314...170,558,194
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO MGI:3056522|MGI:4819826 (MGI:6116315|PMID:26902285) RGD PMID:26902285 MGI:6116315 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
trophectodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle2 prickle planar cell polarity protein 2 ISO MGI:4941925 (MGI:5319591|PMID:22333836) RGD PMID:22333836 MGI:5319591 NCBI chr 4:124,238,167...124,584,176
Ensembl chr 4:124,238,167...124,338,176
JBrowse link
G Tead4 TEA domain transcription factor 4 ISO MGI:106907 (MGI:3770613|PMID:18083014) RGD PMID:18083014 MGI:3770613 NCBI chr 4:161,542,566...161,619,848
Ensembl chr 4:161,540,130...161,587,222
JBrowse link
trophectodermal cell proliferation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C ISO
IEA
(PMID:15150278)
GO_REF:0000107
RGD
Ensembl
PMID:15150278 GO_REF:0000107 NCBI chr 3:44,272,859...44,342,501
Ensembl chr 3:44,270,653...44,342,355
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (MGI:4829413|PMID:20708584) RGD PMID:20708584 MGI:4829413 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Esrrb estrogen-related receptor beta ISO MGI:1857422 (MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:1095811 NCBI chr 6:110,360,940...110,458,406
Ensembl chr 6:110,410,141...110,455,906
JBrowse link
G Zpr1 ZPR1 zinc finger ISO (MGI:3575865|PMID:15767679) RGD PMID:15767679 MGI:3575865 NCBI chr 8:50,563,047...50,572,621
Ensembl chr 8:50,563,047...50,572,621
JBrowse link
trophectodermal cellular morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 IEA
ISO
GO_REF:0000107
MGI:2651546 (MGI:1345775|PMID:10500095)
Ensembl
RGD
PMID:10500095 GO_REF:0000107 MGI:1345775 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Esrrb estrogen-related receptor beta ISO MGI:1857422 (MGI:1095811|PMID:9285590) RGD PMID:9285590 MGI:1095811 NCBI chr 6:110,360,940...110,458,406
Ensembl chr 6:110,410,141...110,455,906
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:1856970|MGI:2158730 (MGI:2138058|PMID:11456449) RGD PMID:11456449 MGI:2138058 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure development 6270
        blastocyst development 156
          blastocyst formation + 59
          blastocyst growth + 32
          blastocyst hatching 38
          regulation of blastocyst development 4
Path 2
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure development 6270
        multicellular organism development 5744
          embryo development 1307
            embryo development ending in birth or egg hatching 861
              chordate embryonic development 845
                in utero embryonic development 545
                  blastocyst development 156
                    blastocyst formation + 59
                    blastocyst growth + 32
                    blastocyst hatching 38
                    regulation of blastocyst development 4
paths to the root