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Gene: Phf6 (PHD finger protein 6) Rattus norvegicus
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Symbol: Phf6
Name: PHD finger protein 6
Description: Predicted to have several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; histone deacetylase binding activity; and scaffold protein binding activity. Predicted to be involved in blastocyst hatching and negative regulation of transcription by RNA polymerase II. Predicted to localize to nucleolus and nucleoplasm. Human ortholog(s) of this gene implicated in Borjeson-Forssman-Lehmann syndrome. Orthologous to human PHF6 (PHD finger protein 6); INTERACTS WITH (-)-demecolcine (ortholog); 1,2-dimethylhydrazine (ortholog); 17beta-hydroxy-5alpha-androstan-3-one (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100359714
Orthologs:
Homo sapiens (human) : PHF6 (PHD finger protein 6)  HGNC  Alliance
Mus musculus (house mouse) : Phf6 (PHD finger protein 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Phf6 (PHD finger protein 6)
Pan paniscus (bonobo/pygmy chimpanzee) : PHF6 (PHD finger protein 6)
Canis lupus familiaris (dog) : PHF6 (PHD finger protein 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Phf6 (PHD finger protein 6)
Sus scrofa (pig) : PHF6 (PHD finger protein 6)
Chlorocebus sabaeus (African green monkey) : PHF6 (PHD finger protein 6)
Heterocephalus glaber (naked mole-rat) : Phf6 (PHD finger protein 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X158,698,353 - 158,739,855 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,698,356 - 158,739,838 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,268,653 - 158,288,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X153,324,996 - 153,366,506 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X152,890,577 - 152,930,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X139,850,136 - 139,890,670NCBIRGSC3.4rn4RGSC3.4
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Phf6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2323526
Created: 2010-05-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.