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Gene: Rxra (retinoid X receptor alpha) Rattus norvegicus
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Symbol: Rxra
Name: retinoid X receptor alpha
RGD ID: 3610
Description: Exhibits protein domain specific binding activity and retinoic acid receptor binding activity. Contributes to double-stranded DNA binding activity. Involved in several processes, including response to retinoic acid; response to selenium ion; and response to vitamin. Localizes to axon and nucleus. Biomarker of alcoholic cardiomyopathy and prostate carcinoma in situ. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RXRA (retinoid X receptor alpha); PARTICIPATES IN retinoic acid signaling pathway; bile acid transport pathway; eicosanoid signaling pathway via peroxisome proliferator-activated receptor gamma; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: nuclear receptor subfamily 2 group B member 1; retinoic acid receptor RXR-alpha
Orthologs:
Homo sapiens (human) : RXRA (retinoid X receptor alpha)  HGNC  Alliance
Mus musculus (house mouse) : Rxra (retinoid X receptor alpha)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rxra (retinoid X receptor alpha)
Pan paniscus (bonobo/pygmy chimpanzee) : RXRA (retinoid X receptor alpha)
Canis lupus familiaris (dog) : RXRA (retinoid X receptor alpha)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rxra (retinoid X receptor alpha)
Sus scrofa (pig) : RXRA (retinoid X receptor alpha)
Chlorocebus sabaeus (African green monkey) : RXRA (retinoid X receptor alpha)
Heterocephalus glaber (naked mole-rat) : Rxra (retinoid X receptor alpha)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.036,272,560 - 6,295,354 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl36,211,789 - 6,295,908 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0311,631,209 - 11,653,959 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.436,605,782 - 6,689,224 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.136,606,054 - 6,690,078 (+)NCBI
Celera35,843,675 - 5,866,536 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Rxra
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 3610
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.