Rxra (retinoid X receptor alpha) - Rat Genome Database

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Gene: Rxra (retinoid X receptor alpha) Chinchilla lanigera
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Symbol: Rxra
Name: retinoid X receptor alpha
RGD ID: 8751388
Description: ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA binding (ortholog); DNA binding domain binding (ortholog); INVOLVED IN aging (ortholog); axon regeneration (ortholog); camera-type eye development (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Diaphragmatic Hernia (ortholog); FOUND IN axon (ortholog); chromatin (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinoic acid receptor RXR-alpha; retinoid X receptor, alpha
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555133,335,897 - 3,386,994 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555133,313,544 - 3,386,544 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (ISO)
axon regeneration  (ISO)
camera-type eye development  (ISO)
cardiac muscle cell proliferation  (ISO)
cellular response to insulin stimulus  (ISO)
embryo implantation  (ISO)
female pregnancy  (ISO)
gene expression  (ISO)
heart development  (ISO)
hormone-mediated signaling pathway  (ISO)
in utero embryonic development  (ISO)
inflammatory response  (ISO)
liver development  (ISO)
maternal placenta development  (ISO)
midgut development  (ISO)
mRNA transcription by RNA polymerase II  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
peroxisome proliferator activated receptor signaling pathway  (ISO)
placenta development  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of thyroid hormone mediated signaling pathway  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus  (ISO)
positive regulation of transcription, DNA-templated  (ISO)
positive regulation of translational initiation by iron  (ISO)
positive regulation of vitamin D receptor signaling pathway  (ISO)
regulation of branching involved in prostate gland morphogenesis  (ISO)
regulation of myelination  (ISO)
regulation of transcription by RNA polymerase II  (ISO)
regulation of transcription, DNA-templated  (ISO)
response to ethanol  (ISO)
response to glucocorticoid  (ISO)
response to nutrient  (ISO)
response to organic cyclic compound  (ISO)
response to retinoic acid  (ISO)
response to selenium ion  (ISO)
response to vitamin A  (ISO)
response to vitamin D  (ISO)
retinoic acid receptor signaling pathway  (ISO)
secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development  (ISO)
ventricular cardiac muscle cell differentiation  (ISO)
ventricular cardiac muscle tissue morphogenesis  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Rxra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555133,335,897 - 3,386,994 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555133,313,544 - 3,386,544 (+)NCBIChiLan1.0ChiLan1.0
RXRA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389134,326,455 - 134,440,585 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9134,317,098 - 134,440,585 (+)EnsemblGRCh38hg38GRCh38
GRCh379137,218,301 - 137,332,431 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369136,358,231 - 136,472,252 (+)NCBINCBI36hg18NCBI36
Build 349134,519,421 - 134,558,376NCBI
Celera9107,734,128 - 107,848,213 (+)NCBI
Cytogenetic Map9q34.2NCBI
HuRef9106,757,493 - 106,796,351 (+)NCBIHuRef
CHM1_19137,442,044 - 137,480,968 (+)NCBICHM1_1
T2T-CHM13v2.09146,541,633 - 146,657,063 (+)NCBI
Rxra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39227,566,457 - 27,653,331 (+)NCBIGRCm39mm39
GRCm39 Ensembl227,566,452 - 27,652,969 (+)Ensembl
GRCm38227,676,445 - 27,763,319 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl227,676,440 - 27,762,957 (+)EnsemblGRCm38mm10GRCm38
MGSCv37227,532,721 - 27,618,839 (+)NCBIGRCm37mm9NCBIm37
MGSCv36227,499,210 - 27,585,328 (+)NCBImm8
Celera227,439,778 - 27,465,824 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
Rxra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2310,989,832 - 11,076,366 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl310,989,832 - 11,073,712 (+)Ensembl
Rnor_6.036,272,560 - 6,295,354 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl36,211,789 - 6,295,908 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0311,631,209 - 11,653,959 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.436,605,782 - 6,689,224 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.136,606,054 - 6,690,078 (+)NCBI
Celera35,843,675 - 5,866,536 (+)NCBICelera
Cytogenetic Map3p12NCBI
RXRA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19134,082,865 - 134,144,704 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9134,082,865 - 134,144,704 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09105,424,046 - 105,539,241 (+)NCBIMhudiblu_PPA_v0panPan3
RXRA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1950,525,195 - 50,575,720 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl950,484,567 - 50,573,119 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,766,609 - 49,860,130 (+)NCBI
ROS_Cfam_1.0951,360,100 - 51,453,773 (+)NCBI
ROS_Cfam_1.0 Ensembl951,359,634 - 51,453,363 (+)Ensembl
UMICH_Zoey_3.1950,120,766 - 50,214,385 (+)NCBI
UNSW_CanFamBas_1.0950,464,001 - 50,557,538 (+)NCBI
UU_Cfam_GSD_1.0950,541,613 - 50,635,257 (+)NCBI
Rxra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947200,612,017 - 200,639,947 (+)NCBI
SpeTri2.0NW_0049366692,735,111 - 2,763,060 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RXRA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1273,705,503 - 273,797,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11273,698,842 - 273,797,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RXRA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1123,704,129 - 3,814,707 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl123,699,923 - 3,814,678 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660581,284,770 - 1,401,711 (+)NCBIVero_WHO_p1.0
Rxra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247602,380,708 - 2,456,928 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247602,379,809 - 2,455,749 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006195   ⟹   ENSCLAP00000006092
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555133,335,897 - 3,386,994 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000006196   ⟹   ENSCLAP00000006093
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555133,361,916 - 3,383,695 (+)Ensembl
RefSeq Acc Id: XM_005408467   ⟹   XP_005408524
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555133,313,544 - 3,386,544 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506714   ⟹   XP_013362168
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555133,336,454 - 3,386,544 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408524 (Get FASTA)   NCBI Sequence Viewer  
  XP_013362168 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005408524   ⟸   XM_005408467
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362168   ⟸   XM_013506714
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000006093   ⟸   ENSCLAT00000006196
RefSeq Acc Id: ENSCLAP00000006092   ⟸   ENSCLAT00000006195


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000006092 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000006093 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006195 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000006196 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Rxra ENTREZGENE
UniProt A0A8C2UUR7_CHILA UniProtKB/TrEMBL
  A0A8C2UVR3_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Rxra  retinoid X receptor alpha    retinoid X receptor, alpha  Symbol and/or name change 5135510 APPROVED