Ncor2 (nuclear receptor co-repressor 2) - Rat Genome Database

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Gene: Ncor2 (nuclear receptor co-repressor 2) Rattus norvegicus
Analyze
Symbol: Ncor2
Name: nuclear receptor co-repressor 2
RGD ID: 1310293
Description: Enables chromatin binding activity; nuclear glucocorticoid receptor binding activity; and nuclear retinoid X receptor binding activity. Involved in several processes, including estrous cycle; lactation; and response to estradiol. Part of chromatin. Human ortholog(s) of this gene implicated in osteoarthritis. Orthologous to human NCOR2 (nuclear receptor corepressor 2); PARTICIPATES IN aldosterone signaling pathway; altered androgen signaling pathway; androgen signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC360801; nuclear receptor corepressor 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,127,736 - 37,289,612 (+)NCBIGRCr8
mRatBN7.21231,466,418 - 31,628,319 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,466,412 - 31,628,319 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1232,638,872 - 32,801,351 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,250,196 - 33,412,674 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,302,037 - 32,464,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01236,871,917 - 37,033,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1236,871,999 - 37,033,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01238,748,528 - 38,909,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,617,643 - 32,725,753 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,481,030 - 32,589,136 (+)NCBI
Celera1233,158,042 - 33,319,623 (+)NCBICelera
Cytogenetic Map12q15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2,8-bis-Trifluoromethyl-4-quinoline carboxylic acid  (ISO)
3,3',5,5'-tetraiodothyroacetic acid  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-aminopyridine  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
bicalutamide  (ISO)
bicuculline  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calciol  (EXP)
calcitriol  (ISO)
camptothecin  (ISO)
cannabidiol  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP,ISO)
cisplatin  (ISO)
coumarin  (ISO)
crotonaldehyde  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
Dicyclohexyl phthalate  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
leflunomide  (ISO)
lithocholic acid  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
methylphenidate  (ISO)
methylseleninic acid  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-N-nitrosourea  (EXP)
Nor-9-carboxy-delta9-THC  (ISO)
okadaic acid  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
parthenolide  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phosgene  (ISO)
propiconazole  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rifampicin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thyroxine  (ISO)
titanium dioxide  (ISO)
trichostatin A  (EXP,ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triticonazole  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
vitamin D  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. The mutational landscape of prostate cancer. Barbieri CE, etal., Eur Urol. 2013 Oct;64(4):567-76. doi: 10.1016/j.eururo.2013.05.029. Epub 2013 May 18.
2. Changes in the content of steroid receptor coactivator-1 and silencing mediator for retinoid and thyroid hormone receptors in the rat brain during the estrous cycle. Camacho-Arroyo I, etal., J Steroid Biochem Mol Biol. 2005 Feb;94(1-3):267-72. Epub 2005 Feb 17.
3. Androgen receptor coregulators and their involvement in the development and progression of prostate cancer. Chmelar R, etal., Int J Cancer. 2007 Feb 15;120(4):719-33.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Role of estrogen receptor alpha transcriptional coregulators in tamoxifen resistance in breast cancer. Girault I, etal., Maturitas. 2006 Jul 20;54(4):342-51. Epub 2006 Jul 5.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
8. Thyroid hormone exerts site-specific effects on SRC-1 and NCoR expression selectively in the neonatal rat brain. Iannacone EA, etal., Mol Cell Endocrinol. 2002 Jan 15;186(1):49-59.
9. Expression of estrogen receptor coregulators in normal and malignant human endometrium. Kershah SM, etal., Gynecol Oncol. 2004 Jan;92(1):304-13.
10. Glucocorticoid receptor (GR)-associated SMRT binding to C/EBPbeta TAD and Nrf2 Neh4/5: role of SMRT recruited to GR in GSTA2 gene repression. Ki SH, etal., Mol Cell Biol. 2005 May;25(10):4150-65.
11. NAC1, a cocaine-regulated POZ/BTB protein interacts with CoREST. Korutla L, etal., J Neurochem. 2007 May;101(3):611-8. Epub 2007 Jan 24.
12. Expression of nuclear hormone receptors, their coregulators and type I iodothyronine 5'-deiodinase gene in mammary tissue of nonlactating and postlactating rats. Macejova D, etal., Life Sci. 2005 Sep 30;77(20):2584-93.
13. A structural and in vitro characterization of asoprisnil: a selective progesterone receptor modulator. Madauss KP, etal., Mol Endocrinol. 2007 May;21(5):1066-81. Epub 2007 Mar 13.
14. Coactivator and corepressor gene expression in rat cerebellum during postnatal development and the effect of altered thyroid status. Martinez de Arrieta C, etal., Endocrinology. 2000 May;141(5):1693-8.
15. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
16. Expression and hormonal regulation of coactivator and corepressor genes. Misiti S, etal., Endocrinology. 1998 May;139(5):2493-500.
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
19. GOA pipeline RGD automated data pipeline
20. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
21. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
22. Comprehensive gene review and curation RGD comprehensive gene curation
23. Dynamic and combinatorial control of gene expression by nuclear retinoic acid receptors (RARs). Rochette-Egly C and Germain P, Nucl Recept Signal. 2009 May 8;7:e005.
24. Glucocorticoid receptor cofactors as therapeutic targets. Simons SS Jr Curr Opin Pharmacol. 2010 Dec;10(6):613-9. Epub 2010 Aug 26.
25. Association study of candidate genes for the prevalence and progression of knee osteoarthritis. Valdes AM, etal., Arthritis Rheum. 2004 Aug;50(8):2497-507.
26. CITED2 and NCOR2 in anti-oestrogen resistance and progression of breast cancer. van Agthoven T, etal., Br J Cancer. 2009 Dec 1;101(11):1824-32. Epub 2009 Nov 10.
27. Neuroanatomical distribution and colocalisation of nuclear receptor corepressor (N-CoR) and silencing mediator of retinoid and thyroid receptors (SMRT) in rat brain. van der Laan S, etal., Brain Res. 2005 Oct 19;1059(2):113-21. Epub 2005 Oct 5.
28. Regulation of the content of progesterone and estrogen receptors, and their cofactors SRC-1 and SMRT by the 26S proteasome in the rat brain during the estrous cycle. Villamar-Cruz O, etal., Brain Res Bull. 2006 Apr 14;69(3):276-81. Epub 2006 Jan 17.
29. Distinct and histone-specific modifications mediate positive versus negative transcriptional regulation of TSHalpha promoter. Wang D, etal., PLoS One. 2010 Mar 24;5(3):e9853.
30. Regulation of alpha 2(I) collagen expression in stellate cells by retinoic acid and retinoid X receptors through interactions with their cofactors. Wang L, etal., Arch Biochem Biophys. 2004 Aug 1;428(1):92-8.
31. Nuclear corepressor is required for inhibition of phosphoenolpyruvate carboxykinase expression by tumor necrosis factor-alpha. Yan J, etal., Mol Endocrinol. 2007 Jul;21(7):1630-41. Epub 2007 Apr 24.
32. Exchange of a nuclear corepressor between NF-kappaB and CREB mediates inhibition of phosphoenolpyruvate carboxykinase transcription by NF-kappaB. Yan JH, etal., Chin Med J (Engl). 2010 Jan 20;123(2):221-6.
33. Interactions of the mineralocorticoid receptor--within and without. Yang J and Fuller PJ, Mol Cell Endocrinol. 2012 Mar 24;350(2):196-205. doi: 10.1016/j.mce.2011.07.001. Epub 2011 Jul 18.
Additional References at PubMed
PMID:10077563   PMID:10097068   PMID:10713164   PMID:11641275   PMID:11804585   PMID:12628926   PMID:15681609   PMID:15832170   PMID:16030140   PMID:16893456   PMID:16924111   PMID:17158926  
PMID:17928865   PMID:18052923   PMID:18347093   PMID:19066220   PMID:19144721   PMID:19299558   PMID:19946888   PMID:19955185   PMID:20388878   PMID:20812024   PMID:21328542   PMID:22001906  
PMID:22082260  


Genomics

Comparative Map Data
Ncor2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,127,736 - 37,289,612 (+)NCBIGRCr8
mRatBN7.21231,466,418 - 31,628,319 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,466,412 - 31,628,319 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1232,638,872 - 32,801,351 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,250,196 - 33,412,674 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,302,037 - 32,464,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01236,871,917 - 37,033,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1236,871,999 - 37,033,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01238,748,528 - 38,909,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,617,643 - 32,725,753 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,481,030 - 32,589,136 (+)NCBI
Celera1233,158,042 - 33,319,623 (+)NCBICelera
Cytogenetic Map12q15NCBI
NCOR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812124,324,415 - 124,567,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12124,324,415 - 124,567,612 (-)EnsemblGRCh38hg38GRCh38
GRCh3712124,808,961 - 125,052,158 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612123,374,914 - 123,586,102 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412123,333,841 - 123,527,720NCBI
Celera12124,408,964 - 124,651,550 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12121,771,692 - 121,986,984 (-)NCBIHuRef
CHM1_112124,630,482 - 124,873,188 (-)NCBICHM1_1
T2T-CHM13v2.012124,326,823 - 124,572,906 (-)NCBIT2T-CHM13v2.0
Ncor2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395125,094,217 - 125,256,302 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5125,094,217 - 125,256,283 (-)EnsemblGRCm39 Ensembl
GRCm385125,017,153 - 125,179,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5125,017,153 - 125,179,219 (-)EnsemblGRCm38mm10GRCm38
MGSCv375125,497,525 - 125,659,584 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,306,141 - 125,468,032 (-)NCBIMGSCv36mm8
Celera5122,035,046 - 122,198,419 (-)NCBICelera
Cytogenetic Map5G1.1NCBI
cM Map563.96NCBI
Ncor2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554824,942,221 - 5,031,904 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554824,927,482 - 5,031,848 (+)NCBIChiLan1.0ChiLan1.0
NCOR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210132,406,083 - 132,647,774 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112132,402,461 - 132,644,151 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,913,368 - 122,155,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112126,200,793 - 126,412,757 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12126,201,779 - 126,372,745 (-)Ensemblpanpan1.1panPan2
NCOR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,352,670 - 5,493,741 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,331,459 - 5,493,830 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,446,098 - 5,657,047 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,532,659 - 5,743,731 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,532,100 - 5,743,730 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1265,467,362 - 5,678,232 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,558,693 - 5,769,716 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0265,510,942 - 5,722,400 (+)NCBIUU_Cfam_GSD_1.0
Ncor2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,704,161 - 158,810,280 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936558677,610 - 775,288 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936558658,723 - 775,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1428,624,702 - 28,819,404 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11428,642,774 - 28,819,404 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21430,287,166 - 30,514,759 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q21NCBI
NCOR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111119,675,363 - 119,917,059 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11119,676,345 - 119,917,000 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037125,366,313 - 125,612,304 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncor2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,777,325 - 23,865,804 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,777,645 - 23,887,804 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ncor2
812 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:91
Interacting mature miRNAs:116
Transcripts:ENSRNOT00000001334
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat

Markers in Region
BE098792  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21231,628,050 - 31,628,253 (+)MAPPERmRatBN7.2
Rnor_6.01237,033,433 - 37,033,635NCBIRnor6.0
Rnor_5.01238,909,665 - 38,909,867UniSTSRnor5.0
RGSC_v3.41232,725,485 - 32,725,687UniSTSRGSC3.4
Celera1233,319,355 - 33,319,557UniSTS
RH 3.4 Map12561.8UniSTS
Cytogenetic Map12q15UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 25 17 7 17 3 66 29 38 8
Low 10 32 24 12 24 8 8 8 6 3 3 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000001334   ⟹   ENSRNOP00000001334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,466,412 - 31,628,319 (+)Ensembl
Rnor_6.0 Ensembl1236,871,999 - 37,033,701 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084236   ⟹   ENSRNOP00000069011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,466,412 - 31,628,319 (+)Ensembl
Rnor_6.0 Ensembl1236,872,020 - 37,032,904 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099234   ⟹   ENSRNOP00000087552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,466,412 - 31,628,319 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104460   ⟹   ENSRNOP00000095519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,466,412 - 31,628,319 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104620   ⟹   ENSRNOP00000089758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,520,308 - 31,628,319 (+)Ensembl
RefSeq Acc Id: NM_001108334   ⟹   NP_001101804
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,901 - 37,289,612 (+)NCBI
mRatBN7.21231,466,588 - 31,628,319 (+)NCBI
Rnor_6.01236,871,999 - 37,033,701 (+)NCBI
Rnor_5.01238,748,528 - 38,909,933 (+)NCBI
RGSC_v3.41232,617,643 - 32,725,753 (+)RGD
Celera1233,158,042 - 33,319,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249305   ⟹   XP_006249367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,736 - 37,289,605 (+)NCBI
mRatBN7.21231,466,418 - 31,628,316 (+)NCBI
Rnor_6.01236,871,917 - 37,033,698 (+)NCBI
Rnor_5.01238,748,528 - 38,909,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249320   ⟹   XP_006249382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,736 - 37,289,605 (+)NCBI
mRatBN7.21231,466,418 - 31,628,316 (+)NCBI
Rnor_6.01236,871,918 - 37,033,698 (+)NCBI
Rnor_5.01238,748,528 - 38,909,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598391   ⟹   XP_017453880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
mRatBN7.21231,525,360 - 31,628,316 (+)NCBI
Rnor_6.01236,897,827 - 37,033,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598392   ⟹   XP_017453881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
mRatBN7.21231,525,360 - 31,628,316 (+)NCBI
Rnor_6.01236,897,827 - 37,033,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598394   ⟹   XP_017453883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,164,618 - 37,289,605 (+)NCBI
mRatBN7.21231,503,721 - 31,628,316 (+)NCBI
Rnor_6.01236,908,231 - 37,033,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598396   ⟹   XP_017453885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
mRatBN7.21231,525,360 - 31,627,325 (+)NCBI
Rnor_6.01236,897,827 - 37,033,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598397   ⟹   XP_017453886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,736 - 37,289,605 (+)NCBI
mRatBN7.21231,466,419 - 31,628,316 (+)NCBI
Rnor_6.01236,871,918 - 37,033,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598398   ⟹   XP_017453887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,736 - 37,289,605 (+)NCBI
mRatBN7.21231,466,419 - 31,628,316 (+)NCBI
Rnor_6.01236,871,918 - 37,033,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089589   ⟹   XP_038945517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
mRatBN7.21231,525,360 - 31,628,316 (+)NCBI
RefSeq Acc Id: XM_039089591   ⟹   XP_038945519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,164,580 - 37,289,605 (+)NCBI
mRatBN7.21231,502,809 - 31,628,316 (+)NCBI
RefSeq Acc Id: XM_039089592   ⟹   XP_038945520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,247,070 - 37,289,605 (+)NCBI
mRatBN7.21231,585,110 - 31,628,316 (+)NCBI
RefSeq Acc Id: XM_039089593   ⟹   XP_038945521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,736 - 37,289,605 (+)NCBI
mRatBN7.21231,466,418 - 31,628,316 (+)NCBI
RefSeq Acc Id: XM_039089594   ⟹   XP_038945522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,736 - 37,289,605 (+)NCBI
mRatBN7.21231,466,419 - 31,628,316 (+)NCBI
RefSeq Acc Id: XM_063271497   ⟹   XP_063127567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271498   ⟹   XP_063127568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271499   ⟹   XP_063127569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271500   ⟹   XP_063127570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271501   ⟹   XP_063127571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271502   ⟹   XP_063127572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271503   ⟹   XP_063127573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271504   ⟹   XP_063127574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271505   ⟹   XP_063127575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271506   ⟹   XP_063127576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271507   ⟹   XP_063127577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271508   ⟹   XP_063127578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271509   ⟹   XP_063127579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271510   ⟹   XP_063127580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271511   ⟹   XP_063127581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271512   ⟹   XP_063127582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271513   ⟹   XP_063127583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271514   ⟹   XP_063127584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271515   ⟹   XP_063127585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271517   ⟹   XP_063127587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271518   ⟹   XP_063127588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,736 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271519   ⟹   XP_063127589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271520   ⟹   XP_063127590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271521   ⟹   XP_063127591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271522   ⟹   XP_063127592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271523   ⟹   XP_063127593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271524   ⟹   XP_063127594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271525   ⟹   XP_063127595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,127,736 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271526   ⟹   XP_063127596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,226,668 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271527   ⟹   XP_063127597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,280,068 (+)NCBI
RefSeq Acc Id: XM_063271528   ⟹   XP_063127598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,153,756 - 37,280,068 (+)NCBI
RefSeq Acc Id: XM_063271529   ⟹   XP_063127599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,247,070 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271530   ⟹   XP_063127600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,247,072 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271531   ⟹   XP_063127601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,247,075 - 37,289,605 (+)NCBI
RefSeq Acc Id: XM_063271532   ⟹   XP_063127602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,247,077 - 37,289,605 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101804 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249367 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249382 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453880 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453881 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453883 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453885 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453886 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945517 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945519 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945520 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945521 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945522 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127567 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127568 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127569 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127570 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127571 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127572 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127573 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127574 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127575 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127576 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127577 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127578 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127579 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127580 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127581 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127582 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127583 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127584 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127585 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127587 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127588 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127589 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127590 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127591 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127592 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127593 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127594 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127595 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127596 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127597 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127598 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127599 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127600 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127601 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127602 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM13562 (Get FASTA)   NCBI Sequence Viewer  
  EDM13563 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001334.5
  ENSRNOP00000069011
  ENSRNOP00000069011.2
  ENSRNOP00000087552
  ENSRNOP00000087552.1
  ENSRNOP00000089758.1
  ENSRNOP00000095519.1
RefSeq Acc Id: NP_001101804   ⟸   NM_001108334
- UniProtKB: D3ZXN9 (UniProtKB/TrEMBL),   A6J0X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249367   ⟸   XM_006249305
- Peptide Label: isoform X24
- UniProtKB: D3ZXN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249382   ⟸   XM_006249320
- Peptide Label: isoform X42
- UniProtKB: D3ZXN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453886   ⟸   XM_017598397
- Peptide Label: isoform X44
- UniProtKB: A0A0G2JU91 (UniProtKB/TrEMBL),   D3ZXN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453887   ⟸   XM_017598398
- Peptide Label: isoform X45
- UniProtKB: D3ZXN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453881   ⟸   XM_017598392
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GHM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453885   ⟸   XM_017598396
- Peptide Label: isoform X28
- UniProtKB: A0A8I6GHM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453880   ⟸   XM_017598391
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GHM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453883   ⟸   XM_017598394
- Peptide Label: isoform X24
- UniProtKB: D3ZXN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000001334   ⟸   ENSRNOT00000001334
RefSeq Acc Id: ENSRNOP00000069011   ⟸   ENSRNOT00000084236
RefSeq Acc Id: XP_038945521   ⟸   XM_039089593
- Peptide Label: isoform X43
- UniProtKB: D3ZXN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945522   ⟸   XM_039089594
- Peptide Label: isoform X46
- UniProtKB: A0A8I6AN60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945519   ⟸   XM_039089591
- Peptide Label: isoform X24
- UniProtKB: D3ZXN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945517   ⟸   XM_039089589
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GHM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945520   ⟸   XM_039089592
- Peptide Label: isoform X37
- UniProtKB: A6J0X4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089758   ⟸   ENSRNOT00000104620
RefSeq Acc Id: ENSRNOP00000095519   ⟸   ENSRNOT00000104460
RefSeq Acc Id: ENSRNOP00000087552   ⟸   ENSRNOT00000099234
RefSeq Acc Id: XP_063127588   ⟸   XM_063271518
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063127595   ⟸   XM_063271525
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063127569   ⟸   XM_063271499
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127572   ⟸   XM_063271502
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063127577   ⟸   XM_063271507
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063127583   ⟸   XM_063271513
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063127578   ⟸   XM_063271508
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063127589   ⟸   XM_063271519
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063127576   ⟸   XM_063271506
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063127584   ⟸   XM_063271514
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063127591   ⟸   XM_063271521
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063127587   ⟸   XM_063271517
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063127593   ⟸   XM_063271523
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063127594   ⟸   XM_063271524
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063127571   ⟸   XM_063271501
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063127585   ⟸   XM_063271515
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063127592   ⟸   XM_063271522
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063127568   ⟸   XM_063271498
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063127573   ⟸   XM_063271503
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063127579   ⟸   XM_063271509
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063127574   ⟸   XM_063271504
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063127581   ⟸   XM_063271511
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063127582   ⟸   XM_063271512
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063127580   ⟸   XM_063271510
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063127590   ⟸   XM_063271520
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063127575   ⟸   XM_063271505
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063127570   ⟸   XM_063271500
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063127567   ⟸   XM_063271497
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127597   ⟸   XM_063271527
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063127598   ⟸   XM_063271528
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063127596   ⟸   XM_063271526
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063127599   ⟸   XM_063271529
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063127600   ⟸   XM_063271530
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063127601   ⟸   XM_063271531
- Peptide Label: isoform X40
RefSeq Acc Id: XP_063127602   ⟸   XM_063271532
- Peptide Label: isoform X41
Protein Domains
HTH myb-type   Myb-like   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXN9-F1-model_v2 AlphaFold D3ZXN9 1-2472 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310293 AgrOrtholog
BioCyc Gene G2FUF-19376 BioCyc
Ensembl Genes ENSRNOG00000001004 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001334.7 UniProtKB/TrEMBL
  ENSRNOT00000084236.2 UniProtKB/TrEMBL
  ENSRNOT00000099234 ENTREZGENE
  ENSRNOT00000099234.1 UniProtKB/TrEMBL
  ENSRNOT00000104460.1 UniProtKB/TrEMBL
  ENSRNOT00000104620.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.430 UniProtKB/TrEMBL
  1.20.58.1880 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeodomain-like UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  N-CoR_GPS2_interact UniProtKB/TrEMBL
  SANT_DNA-bd UniProtKB/TrEMBL
  SANT_eukarya UniProtKB/TrEMBL
KEGG Report rno:360801 UniProtKB/TrEMBL
NCBI Gene 360801 ENTREZGENE
PANTHER NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR UniProtKB/TrEMBL
  NUCLEAR RECEPTOR COREPRESSOR 2 UniProtKB/TrEMBL
Pfam GPS2_interact UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
PhenoGen Ncor2 PhenoGen
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001004 RatGTEx
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt A0A0G2JU91 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A620_RAT UniProtKB/TrEMBL
  A0A8I6AN60 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GHM0 ENTREZGENE, UniProtKB/TrEMBL
  A6J0X3 ENTREZGENE, UniProtKB/TrEMBL
  A6J0X4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZXN9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ncor2  nuclear receptor co-repressor 2   Ncor2_predicted  nuclear receptor co-repressor 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ncor2_predicted  nuclear receptor co-repressor 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED