Rxra (retinoid X receptor alpha) - Rat Genome Database
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Gene: Rxra (retinoid X receptor alpha) Mus musculus
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Symbol: Rxra
Name: retinoid X receptor alpha
RGD ID: 11250
MGI Page MGI
Description: Exhibits DNA binding activity; nuclear receptor activity; and transcription factor binding activity. Contributes to transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including animal organ development; regulation of branching involved in prostate gland morphogenesis; and regulation of cellular macromolecule biosynthetic process. Localizes to RNA polymerase II transcription regulator complex and nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; liver; and sensory organ. Used to study congenital heart disease; dilated cardiomyopathy; and systemic lupus erythematosus. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RXRA (retinoid X receptor alpha); PARTICIPATES IN retinoic acid signaling pathway; bile acid transport pathway; hepatitis C pathway; INTERACTS WITH (-)-anisomycin; 1,2-dimethylhydrazine; 2,2-(2-Chlorophenyl-4'-chlorophenyl)-1,1-dichloroethene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9530071D11Rik; Nr2b1; nuclear receptor subfamily 2 group B member 1; retinoic acid receptor RXR-alpha; RXR; RXR alpha 1; RXRalpha1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39227,566,457 - 27,653,331 (+)NCBIGRCm39mm39
GRCm38227,676,445 - 27,763,319 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl227,676,440 - 27,762,957 (+)EnsemblGRCm38mm10GRCm38
MGSCv37227,532,721 - 27,618,839 (+)NCBIGRCm37mm9NCBIm37
MGSCv36227,499,210 - 27,585,328 (+)NCBImm8
Celera227,439,778 - 27,465,824 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-tocopherol  (ISO)
(+)-schisandrin B  (ISO)
(-)-anisomycin  (EXP,ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoic acid  (ISO)
(R)-mevalonic acid  (ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
13-cis-retinal  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (ISO)
17beta-estradiol  (ISO)
2,2-(2-Chlorophenyl-4'-chlorophenyl)-1,1-dichloroethene  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-[(2,4-dichlorophenyl)methyl]-4-(2,4,4-trimethylpentan-2-yl)phenol  (ISO)
2-bromohexadecanoic acid  (EXP)
2-hydroxyphytanic acid  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,3',5,5'-tetraiodothyroacetic acid  (ISO)
3-[3-(tert-butylsulfanyl)-1-(4-chlorobenzyl)-5-(propan-2-yl)-1H-indol-2-yl]-2,2-dimethylpropanoic acid  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP,ISO)
4-nonylphenol  (EXP)
5-(2-chloroethyl)-4-methylthiazole  (EXP)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
9-cis-retinal  (ISO)
9-cis-retinoic acid  (EXP,ISO)
[4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-DIIODO-PHENYL]-ACETIC ACID  (ISO)
acetamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
alfacalcidol  (ISO)
all-cis-docosa-7,10,13,16-tetraenoic acid  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-acitretin  (ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (ISO)
allyl isothiocyanate  (ISO)
alpha-linolenic acid  (EXP,ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP,ISO)
aphidicolin  (ISO)
arachidonic acid  (ISO)
arotinoid acid  (ISO)
arsenous acid  (EXP,ISO)
beauvericin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-carotene  (ISO)
bexarotene  (ISO)
bezafibrate  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
caesium atom  (ISO)
calciol  (ISO)
calcitriol  (EXP,ISO)
capsaicin  (ISO)
carnosic acid  (ISO)
cerivastatin  (ISO)
chloroacetaldehyde  (ISO)
chlorogenic acid  (ISO)
cholesterol  (ISO)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
Clofop  (ISO)
conjugated linoleic acid  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (EXP,ISO)
DDE  (EXP,ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dextran sulfate  (EXP)
Di-n-hexyl phthalate  (ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (ISO)
dibutylstannane  (EXP,ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
diethyl phthalate  (ISO)
diheptyl phthalate  (ISO)
Diisodecyl phthalate  (ISO)
diisononyl phthalate  (ISO)
Dimethyl phthalate  (ISO)
dimethyl sulfoxide  (EXP)
dimethylarsinous acid  (ISO)
diosgenin  (EXP)
dioxygen  (EXP,ISO)
dipentyl phthalate  (ISO)
dipropyl phthalate  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enniatin  (ISO)
epoxiconazole  (ISO)
equilin  (ISO)
ethanol  (EXP,ISO)
etodolac  (EXP)
etoposide  (ISO)
farnesol  (ISO)
fenofibrate  (ISO)
fentin chloride  (ISO)
fentin hydroxide  (ISO)
fenvalerate  (ISO)
fipronil  (ISO)
flurbiprofen  (ISO)
flutamide  (ISO)
fluvastatin  (ISO)
folic acid  (EXP)
fructose  (EXP)
gamma-hexachlorocyclohexane  (ISO)
genistein  (ISO)
gentamycin  (ISO)
geranylgeraniol  (ISO)
glutathione  (EXP)
griseofulvin  (EXP)
GW 1929  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
L-methionine  (EXP)
leptomycin B  (ISO)
levofloxacin  (ISO)
linoleic acid  (ISO)
linuron  (ISO)
lipopolysaccharide  (EXP)
lithocholic acid  (EXP,ISO)
menadione  (ISO)
menaquinone  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methoprene  (EXP,ISO)
methyltestosterone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nitrofen  (ISO)
obeticholic acid  (ISO)
okadaic acid  (ISO)
oleic acid  (ISO)
orotic acid  (ISO)
Osajin  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
penconazole  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP,ISO)
phorbol 13-acetate 12-myristate  (ISO)
phthalic acid  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP,ISO)
pitavastatin  (ISO)
pitavastatin(1-)  (ISO)
PK-11195  (ISO)
poly(propylene imine) macromolecule  (ISO)
pravastatin  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
prochloraz  (ISO)
procymidone  (ISO)
progesterone  (ISO)
prostaglandin J2  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP,ISO)
retinyl acetate  (EXP)
rifampicin  (EXP,ISO)
Ro 41-5253  (ISO)
Rosavin  (ISO)
selenium atom  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sincalide  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
sucrose  (ISO)
Sudan III  (ISO)
sulindac  (ISO)
tamibarotene  (ISO)
teniposide  (ISO)
tert-butyl hydroperoxide  (EXP)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
thyroxine  (ISO)
titanium dioxide  (EXP)
tomelukast  (EXP)
tributylstannane  (EXP,ISO)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
triphenylphosphane oxide  (ISO)
triphenylstannane  (ISO)
troglitazone  (EXP,ISO)
uranium atom  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin D  (ISO)
vitamin E  (ISO)
zinc acetate  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (ISO)
anatomical structure development  (IBA)
angiogenesis involved in coronary vascular morphogenesis  (TAS)
axon regeneration  (ISO)
camera-type eye development  (IGI)
cardiac muscle cell differentiation  (TAS)
cardiac muscle cell proliferation  (IGI,IMP,TAS)
cell differentiation  (IBA)
cellular response to insulin stimulus  (ISO)
embryo implantation  (IGI)
female pregnancy  (ISO)
heart development  (IMP,TAS)
heart morphogenesis  (TAS)
in utero embryonic development  (IGI)
inflammatory response  (ISO)
liver development  (ISO)
maternal placenta development  (IGI)
mesenchyme development  (TAS)
midgut development  (ISO)
modulation by virus of host process  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of gene expression  (TAS)
negative regulation of transcription by RNA polymerase II  (IBA,IGI,ISO)
peroxisome proliferator activated receptor signaling pathway  (ISO)
placenta development  (IMP)
positive regulation of apoptotic process  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,IGI,IMP,ISO)
positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus  (IDA)
positive regulation of transcription, DNA-templated  (IGI,ISO,TAS)
positive regulation of translational initiation by iron  (IGI)
regulation of branching involved in prostate gland morphogenesis  (IMP)
regulation of myelination  (ISO)
regulation of transcription by RNA polymerase II  (IBA,IGI)
regulation of transcription, DNA-templated  (IDA,ISO)
response to ethanol  (ISO)
response to glucocorticoid  (ISO)
response to nutrient  (ISO)
response to organic cyclic compound  (ISO)
response to retinoic acid  (IBA,ISO)
response to selenium ion  (ISO)
response to vitamin A  (ISO)
response to vitamin D  (ISO)
retinoic acid receptor signaling pathway  (IBA,IDA,IMP,ISO)
secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development  (IMP)
ventricular cardiac muscle cell differentiation  (IGI,IMP)
ventricular cardiac muscle tissue morphogenesis  (IMP)
visceral serous pericardium development  (TAS)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal anterior eye segment morphology  (IAGP)
abnormal atrioventricular cushion morphology  (IAGP)
abnormal atrioventricular valve morphology  (IAGP)
abnormal axial skeleton morphology  (IAGP)
abnormal cardiovascular system morphology  (IAGP)
abnormal cone electrophysiology  (IAGP)
abnormal conotruncal ridge morphology  (IAGP)
abnormal conotruncus septation  (IAGP)
abnormal corneal stroma morphology  (IAGP)
abnormal cricoid cartilage morphology  (IAGP)
abnormal dendritic cell physiology  (IAGP)
abnormal digit morphology  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal extraembryonic tissue morphology  (IAGP)
abnormal eye development  (IAGP)
abnormal eye morphology  (IAGP)
abnormal eyelid morphology  (IAGP)
abnormal hair cycle anagen phase  (IAGP)
abnormal hair cycle telogen phase  (IAGP)
abnormal hair follicle melanin granule distribution  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair growth  (IAGP)
abnormal heart development  (IAGP)
abnormal heart left atrium morphology  (IAGP)
abnormal heart morphology  (IAGP)
abnormal heart ventricle morphology  (IAGP)
abnormal interventricular septum morphology  (IAGP)
abnormal keratinocyte morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal Langerhans cell morphology  (IAGP)
abnormal macrophage activation involved in immune response  (IAGP)
abnormal melanosome morphology  (IAGP)
abnormal mitral valve morphology  (IAGP)
abnormal myocardial trabeculae morphology  (IAGP)
abnormal myocardium compact layer morphology  (IAGP)
abnormal myocardium layer morphology  (IAGP)
abnormal nephron morphology  (IAGP)
abnormal ocular fundus morphology  (IAGP)
abnormal optic disk morphology  (IAGP)
abnormal otic vesicle development  (IAGP)
abnormal pericardial cavity morphology  (IAGP)
abnormal pericardium morphology  (IAGP)
abnormal peritoneal macrophage morphology  (IAGP)
abnormal pharyngeal arch artery morphology  (IAGP)
abnormal photoreceptor outer segment morphology  (IAGP)
abnormal piliary canal morphology  (IAGP)
abnormal placenta labyrinth morphology  (IAGP)
abnormal placenta morphology  (IAGP)
abnormal podocyte foot process morphology  (IAGP)
abnormal postnatal growth/weight/body size  (IAGP)
abnormal prostate gland branching morphogenesis  (IAGP)
abnormal prostate gland physiology  (IAGP)
abnormal regulatory T cell physiology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retinal outer nuclear layer morphology  (IAGP)
abnormal retinal pigment epithelium morphology  (IAGP)
abnormal retinal pigmentation  (IAGP)
abnormal rod electrophysiology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal skin condition  (IAGP)
abnormal skin morphology  (IAGP)
abnormal T-helper 2 cell morphology  (IAGP)
abnormal tricuspid valve morphology  (IAGP)
abnormal truncus arteriosus septation  (IAGP)
abnormal vasculogenesis  (IAGP)
abnormal ventricle papillary muscle morphology  (IAGP)
absent Harderian gland  (IAGP)
absent sclera  (IAGP)
absent sublingual duct  (IAGP)
absent third pharyngeal arch artery  (IAGP)
albuminuria  (IAGP)
alopecia  (IAGP)
aortopulmonary window  (IAGP)
atrioventricular block  (IAGP)
complete atrioventricular septal defect  (IAGP)
congestive heart failure  (IAGP)
corneal opacity  (IAGP)
decreased cardiac output  (IAGP)
decreased cholesterol level  (IAGP)
decreased fetal size  (IAGP)
decreased heart rate  (IAGP)
decreased hepatocyte proliferation  (IAGP)
decreased retinal photoreceptor cell number  (IAGP)
decreased ventral retina size  (IAGP)
decreased ventricle muscle contractility  (IAGP)
delayed dark adaptation  (IAGP)
delayed hair appearance  (IAGP)
delayed hepatic development  (IAGP)
dermal cysts  (IAGP)
dermal hyperplasia  (IAGP)
dermatitis  (IAGP)
dilated heart atrium  (IAGP)
dilated heart right ventricle  (IAGP)
dilated piliary canal  (IAGP)
diluted coat color  (IAGP)
disorganized outer root sheath cells  (IAGP)
disorganized photoreceptor outer segment  (IAGP)
distorted hair follicle pattern  (IAGP)
double outlet right ventricle  (IAGP)
dry skin  (IAGP)
ear inflammation  (IAGP)
edema  (IAGP)
embryonic growth retardation  (IAGP)
enlarged cervical lymph nodes  (IAGP)
enlarged kidney  (IAGP)
enlarged liver  (IAGP)
enlarged spleen  (IAGP)
epidermal hyperplasia  (IAGP)
expanded mesangial matrix  (IAGP)
failure of atrioventricular cushion closure  (IAGP)
fused podocyte foot processes  (IAGP)
glomerulonephritis  (IAGP)
hair follicle degeneration  (IAGP)
heart block  (IAGP)
hyperkeratosis  (IAGP)
impaired macrophage phagocytosis  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased anti-nuclear antigen antibody level  (IAGP)
increased anti-single stranded DNA antibody level  (IAGP)
increased autoantibody level  (IAGP)
increased circulating creatine level  (IAGP)
increased IgG level  (IAGP)
increased IgM level  (IAGP)
increased immunoglobulin level  (IAGP)
increased keratinocyte proliferation  (IAGP)
increased kidney weight  (IAGP)
increased leukocyte cell number  (IAGP)
increased mesangial cell number  (IAGP)
increased prostate intraepithelial neoplasia incidence  (IAGP)
increased renal glomerulus apoptosis  (IAGP)
increased renal glomerulus basement membrane thickness  (IAGP)
increased rhombomere 5 size  (IAGP)
increased urine protein level  (IAGP)
kyphosis  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
lymph node hyperplasia  (IAGP)
mitral valve atresia  (IAGP)
mitral valve stenosis  (IAGP)
mixed cellular infiltration to dermis  (IAGP)
muscular ventricular septal defect  (IAGP)
no abnormal phenotype detected  (IAGP)
optic disk coloboma  (IAGP)
pallor  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
persistent hyperplastic primary vitreous  (IAGP)
persistent truncus arteriosis  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
prenatal lethality  (IAGP)
prostate gland epithelial hyperplasia  (IAGP)
pulmonary artery stenosis  (IAGP)
renal glomerulus hypertrophy  (IAGP)
retinal pigment epithelium atrophy  (IAGP)
scaly skin  (IAGP)
shiny skin  (IAGP)
short photoreceptor outer segment  (IAGP)
skin edema  (IAGP)
skin inflammation  (IAGP)
skin lesions  (IAGP)
small liver  (IAGP)
thick dermal layer  (IAGP)
thick epidermis suprabasal layer  (IAGP)
thin hypodermis  (IAGP)
thin ventricular wall  (IAGP)
third pharyngeal arch hypoplasia  (IAGP)
trabecula carnea hypoplasia  (IAGP)
translucent skin  (IAGP)
ventral rotation of lens  (IAGP)
ventricular hypoplasia  (IAGP)
ventricular myocardium compact layer hypoplasia  (IAGP)
References

Additional References at PubMed
PMID:1310259   PMID:1312497   PMID:1358808   PMID:7638202   PMID:7744009   PMID:7760852   PMID:7774911   PMID:7823919   PMID:7831303   PMID:7838715   PMID:7923367   PMID:7926783  
PMID:7947324   PMID:7967725   PMID:7980510   PMID:7988794   PMID:8075499   PMID:8088777   PMID:8090775   PMID:8199055   PMID:8299717   PMID:8524212   PMID:8559662   PMID:8575300  
PMID:8597642   PMID:8598193   PMID:8604312   PMID:8631847   PMID:8780715   PMID:8786137   PMID:8799145   PMID:8799160   PMID:8801169   PMID:8801176   PMID:8823298   PMID:8855277  
PMID:8901052   PMID:8954108   PMID:8961274   PMID:8978696   PMID:9000050   PMID:9022057   PMID:9053308   PMID:9075714   PMID:9153406   PMID:9241280   PMID:9348290   PMID:9356169  
PMID:9376317   PMID:9425147   PMID:9428411   PMID:9442090   PMID:9464546   PMID:9548551   PMID:9550726   PMID:9550727   PMID:9628876   PMID:9795230   PMID:9804293   PMID:9806918  
PMID:9892670   PMID:9933587   PMID:10049761   PMID:10079186   PMID:10094571   PMID:10349636   PMID:10385625   PMID:10406480   PMID:10452855   PMID:10490294   PMID:10604193   PMID:10610030  
PMID:10625552   PMID:10675365   PMID:10694476   PMID:10753524   PMID:10788465   PMID:10825207   PMID:10866995   PMID:10869350   PMID:10880050   PMID:10919981   PMID:11034212   PMID:11042159  
PMID:11053444   PMID:11076796   PMID:11076861   PMID:11134524   PMID:11171393   PMID:11208732   PMID:11217851   PMID:11259580   PMID:11287642   PMID:11297512   PMID:11328745   PMID:11493527  
PMID:11595821   PMID:11795391   PMID:11830573   PMID:11860472   PMID:11980850   PMID:12015306   PMID:12054477   PMID:12093741   PMID:12149478   PMID:12183441   PMID:12204252   PMID:12297106  
PMID:12360493   PMID:12446833   PMID:12466851   PMID:12477932   PMID:12505043   PMID:12533419   PMID:12535669   PMID:12538623   PMID:12581641   PMID:12746291   PMID:12750559   PMID:12753917  
PMID:12824162   PMID:12840167   PMID:12966085   PMID:14500356   PMID:14529153   PMID:14560013   PMID:14610273   PMID:14701856   PMID:14742273   PMID:14967906   PMID:14978233   PMID:15096541  
PMID:15103326   PMID:15150259   PMID:15282742   PMID:15319426   PMID:15322135   PMID:15340084   PMID:15528208   PMID:15542861   PMID:15572671   PMID:15582777   PMID:15589691   PMID:15601766  
PMID:15601870   PMID:15618518   PMID:15623424   PMID:15646024   PMID:15647825   PMID:15681609   PMID:15699354   PMID:15731112   PMID:15738621   PMID:15766748   PMID:15782199   PMID:15861408  
PMID:16043864   PMID:16128002   PMID:16141072   PMID:16141073   PMID:16156795   PMID:16157696   PMID:16179348   PMID:16199515   PMID:16259011   PMID:16271724   PMID:16352730   PMID:16424021  
PMID:16428452   PMID:16498401   PMID:16574820   PMID:16606617   PMID:16751185   PMID:16829625   PMID:16880407   PMID:16888087   PMID:16963076   PMID:16971476   PMID:16973757   PMID:17008383  
PMID:17018855   PMID:17074929   PMID:17107947   PMID:17124491   PMID:17195188   PMID:17270348   PMID:17301838   PMID:17433077   PMID:17521607   PMID:17595322   PMID:17613434   PMID:17641689  
PMID:17656367   PMID:17823970   PMID:17951580   PMID:17952069   PMID:18028902   PMID:18196602   PMID:18270576   PMID:18282814   PMID:18287559   PMID:18393306   PMID:18408763   PMID:18561907  
PMID:18675890   PMID:18713813   PMID:18755030   PMID:18773928   PMID:18784308   PMID:18952117   PMID:19121312   PMID:19176532   PMID:19188585   PMID:19255444   PMID:19300518   PMID:19345331  
PMID:19414603   PMID:19448158   PMID:19605690   PMID:19665987   PMID:19686701   PMID:19737349   PMID:19741146   PMID:19883617   PMID:19897601   PMID:20035057   PMID:20059953   PMID:20171278  
PMID:20211142   PMID:20230754   PMID:20299672   PMID:20375256   PMID:20412781   PMID:20498053   PMID:20557428   PMID:20629968   PMID:20685850   PMID:20798333   PMID:20932939   PMID:20944655  
PMID:21060791   PMID:21135166   PMID:21138976   PMID:21267068   PMID:21343363   PMID:21349840   PMID:21525287   PMID:21658367   PMID:21873635   PMID:21940995   PMID:22001906   PMID:22040871  
PMID:22098603   PMID:22138104   PMID:22314496   PMID:22316320   PMID:22573555   PMID:22581777   PMID:22730183   PMID:22982455   PMID:23166811   PMID:23342106   PMID:23499423   PMID:23585425  
PMID:23775127   PMID:23896434   PMID:23977068   PMID:23981290   PMID:23990020   PMID:24034621   PMID:24051096   PMID:24120911   PMID:24146318   PMID:24265455   PMID:24610012   PMID:24788806  
PMID:24810760   PMID:24952961   PMID:24972164   PMID:25189354   PMID:25218146   PMID:25324544   PMID:25417649   PMID:25451687   PMID:25574839   PMID:25738607   PMID:26241474   PMID:26410627  
PMID:26427057   PMID:26443578   PMID:27051978   PMID:27214556   PMID:27445154   PMID:27728806   PMID:27875243   PMID:28087565   PMID:28114934   PMID:28115699   PMID:28205585   PMID:28291835  
PMID:28627642   PMID:28895119   PMID:28923935   PMID:29031500   PMID:29044125   PMID:29089448   PMID:29093497   PMID:29121869   PMID:30355624   PMID:30931933   PMID:31006513   PMID:31152145  
PMID:31914884   PMID:32246014   PMID:32325033  


Genomics

Comparative Map Data
Rxra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39227,566,457 - 27,653,331 (+)NCBIGRCm39mm39
GRCm38227,676,445 - 27,763,319 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl227,676,440 - 27,762,957 (+)EnsemblGRCm38mm10GRCm38
MGSCv37227,532,721 - 27,618,839 (+)NCBIGRCm37mm9NCBIm37
MGSCv36227,499,210 - 27,585,328 (+)NCBImm8
Celera227,439,778 - 27,465,824 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
RXRA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9134,317,098 - 134,440,585 (+)EnsemblGRCh38hg38GRCh38
GRCh389134,326,455 - 134,440,585 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379137,218,316 - 137,332,431 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369136,358,231 - 136,472,252 (+)NCBINCBI36hg18NCBI36
Build 349134,519,421 - 134,558,376NCBI
Celera9107,734,128 - 107,848,213 (+)NCBI
Cytogenetic Map9q34.2NCBI
HuRef9106,757,493 - 106,796,351 (+)NCBIHuRef
CHM1_19137,419,676 - 137,480,969 (+)NCBICHM1_1
Rxra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.036,272,560 - 6,295,354 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl36,211,789 - 6,295,908 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0311,631,209 - 11,653,959 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.436,605,782 - 6,689,224 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.136,606,054 - 6,690,078 (+)NCBI
Celera35,843,675 - 5,866,536 (+)NCBICelera
Cytogenetic Map3p12NCBI
Rxra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555133,335,897 - 3,386,994 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555133,313,544 - 3,386,544 (+)NCBIChiLan1.0ChiLan1.0
RXRA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19134,082,865 - 134,144,704 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9134,082,865 - 134,144,704 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09105,424,046 - 105,539,241 (+)NCBIMhudiblu_PPA_v0panPan3
RXRA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl950,484,567 - 50,573,119 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1950,525,195 - 50,575,720 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rxra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366692,735,111 - 2,763,060 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RXRA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1273,705,503 - 273,797,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11273,698,842 - 273,797,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RXRA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1123,704,129 - 3,814,707 (-)NCBI
ChlSab1.1 Ensembl123,699,923 - 3,814,678 (-)Ensembl
Rxra
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247602,379,809 - 2,455,749 (+)NCBI

Position Markers
Rxra  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
cM Map217.0UniSTS
cM Map217.0UniSTS
D2Mit120  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38227,712,048 - 27,712,193UniSTSGRCm38
MGSCv37227,567,568 - 27,567,713UniSTSGRCm37
Cytogenetic Map2A3UniSTS
cM Map217.0UniSTS
Whitehead Genetic221.9UniSTS
Whitehead/MRC_RH2492.61UniSTS
Whitehead_YAC2 UniSTS
Rxra  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
Rxra  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
Rxra  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
Rxra  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
cM Map217.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323390328289138Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2778910341789249Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2834628442346384Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2841803942418228Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2949443443494563Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2949443443494563Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212472666726109Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21432455548324701Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2123971355239859Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22123971355239859Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22379913357799257Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22470000055000000Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22478910333633160Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22478910333633160Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22541803957081799Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22713263056506216Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22771204884183040Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2910
Count of miRNA genes:713
Interacting mature miRNAs:920
Transcripts:ENSMUST00000077257, ENSMUST00000100251, ENSMUST00000113934, ENSMUST00000129514, ENSMUST00000148756, ENSMUST00000166775
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI647710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M84817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U77683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U77684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X66223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000077257   ⟹   ENSMUSP00000076491
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl227,677,201 - 27,762,957 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100251   ⟹   ENSMUSP00000097822
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl227,709,292 - 27,760,183 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113934   ⟹   ENSMUSP00000109567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl227,710,583 - 27,760,183 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129514   ⟹   ENSMUSP00000115165
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl227,676,440 - 27,741,898 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148756
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl227,740,201 - 27,748,671 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166775   ⟹   ENSMUSP00000133044
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl227,677,262 - 27,761,417 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238859   ⟹   ENSMUSP00000158864
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl227,721,151 - 27,754,348 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238913   ⟹   ENSMUSP00000159198
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl227,725,219 - 27,759,688 (+)Ensembl
RefSeq Acc Id: NM_001290481   ⟹   NP_001277410
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39227,599,304 - 27,653,331 (+)NCBI
GRCm38227,709,292 - 27,763,319 (+)NCBI
Celera227,439,800 - 27,465,824 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290482   ⟹   NP_001277411
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39227,600,595 - 27,653,331 (+)NCBI
GRCm38227,710,583 - 27,763,319 (+)NCBI
Celera227,439,800 - 27,465,824 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011305   ⟹   NP_035435
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39227,567,213 - 27,653,331 (+)NCBI
GRCm38227,677,201 - 27,763,319 (+)NCBI
MGSCv37227,532,721 - 27,618,839 (+)RGD
Celera227,439,800 - 27,465,824 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497805   ⟹   XP_006497868
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39227,566,457 - 27,652,969 (+)NCBI
GRCm38227,676,445 - 27,762,959 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248867   ⟹   XP_030104727
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39227,625,166 - 27,652,969 (+)NCBI
GRCm38227,735,154 - 27,762,959 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035435   ⟸   NM_011305
- Peptide Label: isoform 1
- UniProtKB: P28700 (UniProtKB/Swiss-Prot),   A2AJP1 (UniProtKB/TrEMBL),   Q3UMU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497868   ⟸   XM_006497805
- Peptide Label: isoform X1
- UniProtKB: Q6LC96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277411   ⟸   NM_001290482
- Peptide Label: isoform 2
- UniProtKB: A2AJP1 (UniProtKB/TrEMBL),   Q6LC96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277410   ⟸   NM_001290481
- Peptide Label: isoform 2
- UniProtKB: A2AJP1 (UniProtKB/TrEMBL),   Q6LC96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104727   ⟸   XM_030248867
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000109567   ⟸   ENSMUST00000113934
RefSeq Acc Id: ENSMUSP00000133044   ⟸   ENSMUST00000166775
RefSeq Acc Id: ENSMUSP00000158864   ⟸   ENSMUST00000238859
RefSeq Acc Id: ENSMUSP00000159198   ⟸   ENSMUST00000238913
RefSeq Acc Id: ENSMUSP00000115165   ⟸   ENSMUST00000129514
RefSeq Acc Id: ENSMUSP00000097822   ⟸   ENSMUST00000100251
RefSeq Acc Id: ENSMUSP00000076491   ⟸   ENSMUST00000077257
Protein Domains
NR LBD   Nuclear receptor

Promoters
RGD ID:6832635
Promoter ID:MM_KWN:28368
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4
Transcripts:OTTMUST00000028668
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36227,531,214 - 27,531,714 (+)MPROMDB
RGD ID:6832634
Promoter ID:MM_KWN:28369
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_011305
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36227,531,756 - 27,533,052 (+)MPROMDB
RGD ID:6832632
Promoter ID:MM_KWN:28370
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day4,   Liver
Transcripts:ENSMUST00000100251
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36227,564,466 - 27,564,966 (+)MPROMDB
RGD ID:6832633
Promoter ID:MM_KWN:28371
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000113934
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36227,565,371 - 27,566,602 (+)MPROMDB
RGD ID:6832637
Promoter ID:MM_KWN:28372
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000028669
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36227,594,731 - 27,596,107 (+)MPROMDB
RGD ID:6876770
Promoter ID:EPDNEW_M1836
Type:initiation region
Name:Rxra_1
Description:Mus musculus retinoid X receptor alpha , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1837  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38227,677,261 - 27,677,321EPDNEW
RGD ID:6876772
Promoter ID:EPDNEW_M1837
Type:multiple initiation site
Name:Rxra_2
Description:Mus musculus retinoid X receptor alpha , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1836  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38227,728,853 - 27,728,913EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98214 AgrOrtholog
Ensembl Genes ENSMUSG00000015846 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000076491 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000097822 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109567 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000115165 UniProtKB/TrEMBL
  ENSMUSP00000133044 UniProtKB/Swiss-Prot
  ENSMUSP00000158864 UniProtKB/TrEMBL
  ENSMUSP00000159198 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000077257 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000100251 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113934 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000129514 UniProtKB/TrEMBL
  ENSMUST00000166775 UniProtKB/Swiss-Prot
  ENSMUST00000238859 UniProtKB/TrEMBL
  ENSMUST00000238913 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuc_recep-AF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Retinoid-X_rcpt/HNF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20181 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98214 ENTREZGENE
NCBI Gene 20181 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuc_recep-AF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rxra PhenoGen
PRINTS RETINOIDXR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.24624 ENTREZGENE
UniProt A0A5F8MP91_MOUSE UniProtKB/TrEMBL
  A0A5F8MQ23_MOUSE UniProtKB/TrEMBL
  A2AJP1 ENTREZGENE, UniProtKB/TrEMBL
  A2AJP2_MOUSE UniProtKB/TrEMBL
  P28700 ENTREZGENE
  Q3UMU4 ENTREZGENE, UniProtKB/TrEMBL
  Q6LC96 ENTREZGENE, UniProtKB/TrEMBL
  RXRA_MOUSE UniProtKB/Swiss-Prot